Wall clock time and date at job start Tue Mar 31 2020 03:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47013 * 2 1 4 4 C 1.52997 * 109.47455 * 239.99213 * 2 1 3 5 5 N 1.46504 * 109.47073 * 185.00153 * 4 2 1 6 6 C 1.34778 * 119.99744 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00402 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99780 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.73382 * 294.70639 * 8 6 5 10 10 C 1.53348 * 109.60042 * 55.11368 * 8 6 5 11 11 C 1.53067 * 108.42784 * 52.22732 * 10 8 6 12 12 C 1.50177 * 109.89104 * 48.89436 * 11 10 8 13 13 O 1.21283 * 118.24084 * 162.41840 * 12 11 10 14 14 N 1.33354 * 123.50823 * 342.70590 * 12 11 10 15 15 C 1.45731 * 124.11953 * 1.64296 * 14 12 11 16 16 N 1.46506 * 109.46747 * 119.99314 * 2 1 3 17 17 C 1.46500 * 120.00134 * 60.00322 * 16 2 1 18 18 C 1.36938 * 119.99789 * 240.00138 * 16 2 1 19 19 H 1.07998 * 120.00262 * 21.45991 * 18 16 2 20 20 C 1.38814 * 119.99822 * 201.46162 * 18 16 2 21 21 N 1.31624 * 120.00153 * 13.43501 * 20 18 16 22 22 Si 1.86801 * 120.00127 * 193.43347 * 20 18 16 23 23 H 1.48499 * 109.47040 * 59.99872 * 22 20 18 24 24 H 1.48498 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46815 * 299.99763 * 22 20 18 26 26 H 1.08992 * 109.47514 * 300.00761 * 1 2 3 27 27 H 1.09004 * 109.46695 * 60.01070 * 1 2 3 28 28 H 1.09004 * 109.47013 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46918 * 65.00304 * 4 2 1 30 30 H 1.08994 * 109.47354 * 305.00366 * 4 2 1 31 31 H 0.96997 * 120.00231 * 359.97438 * 5 4 2 32 32 H 1.09007 * 109.47363 * 180.40753 * 9 8 6 33 33 H 1.08999 * 109.47326 * 300.40515 * 9 8 6 34 34 H 1.09001 * 109.47436 * 60.41256 * 9 8 6 35 35 H 1.08996 * 109.67580 * 292.49058 * 10 8 6 36 36 H 1.09008 * 109.66765 * 171.96068 * 10 8 6 37 37 H 1.09004 * 109.39678 * 288.76997 * 11 10 8 38 38 H 1.08998 * 109.33178 * 168.98151 * 11 10 8 39 39 H 0.97004 * 117.94199 * 181.91864 * 14 12 11 40 40 H 1.09006 * 109.44364 * 220.98728 * 15 14 12 41 41 H 1.09002 * 109.08957 * 101.65313 * 15 14 12 42 42 H 1.08999 * 109.46848 * 95.08975 * 17 16 2 43 43 H 1.08998 * 109.47325 * 215.09086 * 17 16 2 44 44 H 1.08998 * 109.46523 * 335.09414 * 17 16 2 45 45 H 0.96996 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1903 6 6 4.1732 -1.4285 -2.1908 7 8 3.5702 -1.8836 -3.1395 8 6 5.6752 -1.5361 -2.1306 9 6 6.2963 -0.1396 -2.1988 10 6 6.0899 -2.2204 -0.8224 11 6 5.3128 -3.5331 -0.6955 12 6 5.4108 -4.3107 -1.9765 13 8 5.1401 -5.4927 -1.9525 14 7 5.7848 -3.7723 -3.1378 15 6 6.1766 -2.3786 -3.3042 16 7 2.0182 -0.6905 1.1963 17 6 1.6643 -2.0931 1.4283 18 6 2.8054 -0.0249 2.0977 19 1 2.7904 1.0544 2.1342 20 6 3.6228 -0.7374 2.9644 21 7 3.8474 -2.0172 2.7545 22 14 4.4041 0.1202 4.4285 23 1 3.3396 0.6673 5.3076 24 1 5.2254 -0.8533 5.1920 25 1 5.2688 1.2284 3.9495 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -0.1585 -2.1369 30 1 1.6054 -1.7199 -1.2950 31 1 3.9824 -0.4622 -0.4317 32 1 7.3826 -0.2228 -2.1623 33 1 6.0002 0.3447 -3.1293 34 1 5.9489 0.4543 -1.3534 35 1 5.8549 -1.5718 0.0215 36 1 7.1599 -2.4276 -0.8400 37 1 4.2661 -3.3150 -0.4835 38 1 5.7321 -4.1232 0.1193 39 1 5.7928 -4.3434 -3.9219 40 1 5.7549 -1.9913 -4.2318 41 1 7.2638 -2.3173 -3.3531 42 1 2.4602 -2.7356 1.0517 43 1 1.5350 -2.2632 2.4971 44 1 0.7345 -2.3238 0.9085 45 1 4.4182 -2.5152 3.3604 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755314784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:32 Heat of formation + Delta-G solvation = -82.165553 kcal Electronic energy + Delta-G solvation = -26633.948693 eV Core-core repulsion = 23071.754987 eV Total energy + Delta-G solvation = -3562.193705 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07762 -40.21119 -38.49926 -37.35995 -35.44162 -34.55478 -33.41513 -32.32469 -31.02115 -27.95544 -27.40488 -27.12880 -25.24389 -24.90485 -23.80684 -21.68429 -21.02662 -19.60006 -18.75835 -18.26495 -17.41805 -17.24036 -16.98657 -16.81818 -16.60549 -16.09158 -15.59621 -15.19152 -14.97926 -14.63303 -14.48290 -14.35696 -14.13203 -13.76220 -13.59494 -13.43714 -13.39431 -13.15705 -13.05203 -12.77358 -12.56530 -12.52239 -12.34423 -12.22783 -12.18030 -12.07978 -11.72687 -11.68145 -11.45841 -10.84640 -10.63904 -10.51316 -10.06713 -9.83818 -8.71465 -7.68508 -5.16615 1.53148 1.56810 1.58602 1.61535 1.73920 2.34017 2.41019 2.58684 3.44088 3.45052 3.55310 3.67339 3.70382 3.78208 4.04710 4.10929 4.34300 4.41246 4.42731 4.62412 4.64612 4.71004 4.72787 4.78127 4.84766 4.85409 4.91128 4.96990 5.07414 5.09253 5.14411 5.29044 5.32673 5.33857 5.50522 5.67790 5.76931 5.80220 5.83226 6.28841 6.41447 6.75626 7.16908 7.25080 7.37410 7.95958 8.42822 9.31512 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.006297 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.990719 B = 4445.713716 C = 5074.764020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.077 0.923 4 C 0.114 3.886 5 N -0.698 5.698 6 C 0.513 3.487 7 O -0.587 6.587 8 C -0.093 4.093 9 C -0.131 4.131 10 C -0.098 4.098 11 C -0.127 4.127 12 C 0.519 3.481 13 O -0.615 6.615 14 N -0.699 5.699 15 C 0.132 3.868 16 N -0.598 5.598 17 C 0.183 3.817 18 C -0.261 4.261 19 H 0.072 0.928 20 C -0.032 4.032 21 N -0.917 5.917 22 Si 0.952 3.048 23 H -0.293 1.293 24 H -0.304 1.304 25 H -0.272 1.272 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.411 0.589 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.004 0.996 43 H 0.013 0.987 44 H 0.014 0.986 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 6.580 -10.446 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.095 0.905 4 C -0.012 4.012 5 N -0.347 5.347 6 C 0.300 3.700 7 O -0.469 6.469 8 C -0.096 4.096 9 C -0.188 4.188 10 C -0.136 4.136 11 C -0.167 4.167 12 C 0.308 3.692 13 O -0.498 6.498 14 N -0.348 5.348 15 C 0.008 3.992 16 N -0.322 5.322 17 C 0.038 3.962 18 C -0.391 4.391 19 H 0.090 0.910 20 C -0.229 4.229 21 N -0.563 5.563 22 Si 0.782 3.218 23 H -0.221 1.221 24 H -0.231 1.231 25 H -0.198 1.198 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.248 0.752 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.239 0.761 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.767 5.744 -10.790 13.516 hybrid contribution 0.099 -0.242 1.333 1.358 sum 5.866 5.502 -9.458 12.415 Atomic orbital electron populations 1.22079 0.95650 1.01328 1.01947 1.20803 0.93890 0.95676 0.84522 0.90488 1.21806 0.80562 0.99580 0.99258 1.45875 1.07827 1.57970 1.23032 1.20879 0.90657 0.76710 0.81786 1.90635 1.71183 1.49780 1.35298 1.21232 0.90897 1.00064 0.97427 1.21774 1.02795 0.90865 1.03392 1.21694 1.01362 0.94264 0.96261 1.21475 1.02895 0.98024 0.94333 1.20415 0.74922 0.87129 0.86775 1.90678 1.52902 1.18822 1.87421 1.45241 1.66709 1.13068 1.09827 1.21528 1.01278 0.78515 0.97835 1.44007 1.57669 1.09076 1.21404 1.20393 0.93867 0.85076 0.96845 1.19383 1.16484 0.91110 1.12074 0.91028 1.25454 0.99004 0.96547 1.01911 1.70217 1.40218 1.08181 1.37694 0.85598 0.77895 0.77550 0.80735 1.22050 1.23078 1.19760 0.92778 0.90606 0.93825 0.91365 0.95057 0.75161 0.88006 0.90836 0.91738 0.90177 0.87490 0.90861 0.88750 0.76106 0.89069 0.86776 0.97817 0.96835 0.96796 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 9.18 71.98 0.66 -3.91 16 2 C 0.16 5.55 2.87 44.99 0.13 5.68 16 3 H 0.08 2.58 7.85 -2.38 -0.02 2.56 16 4 C 0.11 3.98 4.97 86.38 0.43 4.41 16 5 N -0.70 -23.90 5.15 -463.06 -2.39 -26.28 16 6 C 0.51 16.84 4.74 87.66 0.42 17.25 16 7 O -0.59 -22.88 15.59 -3.01 -0.05 -22.93 16 8 C -0.09 -2.22 0.65 -52.84 -0.03 -2.25 16 9 C -0.13 -2.18 8.45 71.98 0.61 -1.57 16 10 C -0.10 -2.63 4.73 30.73 0.15 -2.48 16 11 C -0.13 -4.52 5.50 29.71 0.16 -4.36 16 12 C 0.52 18.87 7.44 87.71 0.65 19.52 16 13 O -0.61 -27.59 17.78 -3.04 -0.05 -27.64 16 14 N -0.70 -19.24 5.11 -467.36 -2.39 -21.63 16 15 C 0.13 2.69 5.40 86.50 0.47 3.15 16 16 N -0.60 -25.98 2.29 -702.78 -1.61 -27.59 16 17 C 0.18 8.63 8.10 127.77 1.04 9.66 16 18 C -0.26 -12.27 9.34 84.03 0.78 -11.48 16 19 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 20 C -0.03 -1.58 5.09 84.86 0.43 -1.15 16 21 N -0.92 -47.79 10.64 21.65 0.23 -47.56 16 22 Si 0.95 40.84 29.57 68.60 2.03 42.87 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.04 1.39 6.66 -2.38 -0.02 1.37 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.03 1.25 7.84 -2.39 -0.02 1.23 16 31 H 0.41 14.73 7.04 -92.71 -0.65 14.08 16 32 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.21 7.98 -2.39 -0.02 1.20 16 35 H 0.08 2.45 7.58 -2.39 -0.02 2.43 16 36 H 0.11 2.20 8.13 -2.38 -0.02 2.18 16 37 H 0.07 3.17 7.37 -2.38 -0.02 3.16 16 38 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.40 10.11 8.80 -92.70 -0.82 9.29 16 40 H 0.09 1.80 7.73 -2.38 -0.02 1.78 16 41 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 42 H 0.00 0.19 7.38 -2.39 -0.02 0.17 16 43 H 0.01 0.68 7.24 -2.39 -0.02 0.66 16 44 H 0.01 0.59 6.44 -2.39 -0.02 0.57 16 45 H 0.24 12.83 8.31 -92.71 -0.77 12.06 16 Total: -1.00 -66.20 355.06 1.19 -65.01 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.47 Total: 33.29 kcal Atomic # 6 Polarization: 26.58 SS G_CDS: 5.89 Total: 32.47 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -6.15 Total: -123.06 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.10 Total: -50.57 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -66.20 1.19 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755314784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.153 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds