Wall clock time and date at job start Tue Mar 31 2020 03:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99442 * 2 1 4 4 N 1.34775 * 120.00225 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00115 * 355.30565 * 4 2 1 6 6 C 1.46500 * 119.99825 * 175.31480 * 4 2 1 7 7 C 1.50693 * 109.47632 * 90.00010 * 6 4 2 8 8 O 1.21285 * 119.99784 * 0.26967 * 7 6 4 9 9 N 1.34776 * 120.00246 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99959 * 0.02562 * 9 7 6 11 11 C 1.46502 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.09002 * 109.46927 * 0.02562 * 11 9 7 13 13 C 1.52991 * 109.47020 * 120.00037 * 11 9 7 14 14 N 1.46503 * 109.47489 * 305.00001 * 13 11 9 15 15 C 1.36931 * 120.00252 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00386 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00041 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99922 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46888 * 90.00135 * 19 17 15 21 21 H 1.48503 * 109.46803 * 209.99972 * 19 17 15 22 22 H 1.48501 * 109.46997 * 329.99923 * 19 17 15 23 23 C 1.52996 * 109.47264 * 240.00281 * 11 9 7 24 24 C 1.53004 * 117.49904 * 248.74886 * 23 11 9 25 25 C 1.52993 * 117.50165 * 180.08896 * 23 11 9 26 26 H 1.09005 * 109.47145 * 185.21434 * 1 2 3 27 27 H 1.09003 * 109.47142 * 305.20889 * 1 2 3 28 28 H 1.08999 * 109.47057 * 65.21467 * 1 2 3 29 29 H 1.08998 * 109.47586 * 275.46717 * 5 4 2 30 30 H 1.09008 * 109.46936 * 35.46514 * 5 4 2 31 31 H 1.08999 * 109.46989 * 155.46019 * 5 4 2 32 32 H 1.08998 * 109.47326 * 329.98948 * 6 4 2 33 33 H 1.09007 * 109.46672 * 209.99972 * 6 4 2 34 34 H 1.08994 * 109.47223 * 89.99667 * 10 9 7 35 35 H 1.08998 * 109.46837 * 210.00194 * 10 9 7 36 36 H 1.09004 * 109.46685 * 329.99481 * 10 9 7 37 37 H 1.08999 * 109.47445 * 65.00128 * 13 11 9 38 38 H 1.09010 * 109.47426 * 184.99888 * 13 11 9 39 39 H 0.97005 * 119.99636 * 0.02562 * 14 13 11 40 40 H 0.96998 * 119.99382 * 180.02562 * 18 17 15 41 41 H 1.09002 * 115.54961 * 34.41513 * 23 11 9 42 42 H 1.09004 * 117.49577 * 359.97438 * 24 23 11 43 43 H 1.09005 * 117.50037 * 145.01632 * 24 23 11 44 44 H 1.09001 * 117.49891 * 214.97764 * 25 23 11 45 45 H 1.09003 * 117.50099 * 359.97316 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4522 -2.4337 0.1049 6 6 3.6422 -1.1692 -0.1031 7 6 4.2439 -1.1113 1.2773 8 8 3.5230 -1.0770 2.2520 9 7 5.5831 -1.1035 1.4290 10 6 6.4539 -1.1508 0.2518 11 6 6.1680 -1.0466 2.7709 12 1 5.3708 -1.0167 3.5137 13 6 7.0341 -2.2862 3.0027 14 7 6.2360 -3.4913 2.7640 15 6 6.8034 -4.7288 2.9118 16 1 7.8394 -4.8165 3.2040 17 6 6.0472 -5.8706 2.6851 18 7 4.7847 -5.7638 2.3285 19 14 6.8215 -7.5587 2.8860 20 1 6.6449 -8.0207 4.2862 21 1 6.1646 -8.5177 1.9618 22 1 8.2702 -7.4797 2.5697 23 6 7.0315 0.2100 2.8981 24 6 8.5454 0.0185 3.0098 25 6 7.7357 0.4510 4.2347 26 1 -0.3634 -1.0235 0.0934 27 1 -0.3633 0.5925 0.8397 28 1 -0.3633 0.4308 -0.9330 29 1 1.2593 -2.6566 1.1543 30 1 0.5054 -2.3533 -0.4294 31 1 2.0495 -3.2337 -0.3326 32 1 3.9670 -0.3019 -0.6778 33 1 3.9696 -2.0803 -0.6042 34 1 6.6686 -0.1358 -0.0823 35 1 7.3861 -1.6535 0.5095 36 1 5.9547 -1.6986 -0.5475 37 1 7.8819 -2.2704 2.3178 38 1 7.3975 -2.2888 4.0305 39 1 5.3055 -3.4126 2.5012 40 1 4.2563 -6.5617 2.1705 41 1 6.6735 1.0835 2.3531 42 1 8.9261 -1.0027 2.9931 43 1 9.1834 0.7663 2.5386 44 1 7.8414 1.4831 4.5690 45 1 7.5836 -0.2855 5.0238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755556884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:26 Heat of formation + Delta-G solvation = -11.838743 kcal Electronic energy + Delta-G solvation = -25551.807879 eV Core-core repulsion = 21992.663773 eV Total energy + Delta-G solvation = -3559.144106 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23997 -39.21808 -37.58239 -35.31444 -34.86204 -33.99579 -31.31986 -30.58626 -28.61295 -27.46835 -26.40183 -25.74544 -24.15655 -22.52604 -21.89257 -20.53066 -19.01805 -18.42421 -17.12665 -17.10549 -16.92495 -16.36572 -15.81447 -15.35560 -15.11050 -14.59326 -14.42591 -14.00978 -13.42186 -13.28682 -13.21519 -12.91543 -12.90716 -12.82134 -12.68536 -12.22118 -12.14189 -11.96280 -11.92280 -11.54504 -11.45850 -11.25097 -11.01318 -10.81617 -10.72609 -10.28787 -10.10550 -9.81246 -9.76484 -9.71274 -9.54448 -8.88572 -8.49361 -8.18964 -6.91373 -5.76344 -3.04868 2.63127 2.98473 3.07616 3.41573 3.46548 3.47723 3.48128 4.03562 4.56963 4.65762 4.85650 4.93140 5.10816 5.13489 5.15070 5.18658 5.29555 5.36247 5.40675 5.44771 5.52584 5.55018 5.58070 5.68568 5.79375 5.81547 5.89008 5.96064 5.99028 6.02713 6.06812 6.30428 6.32021 6.39166 6.42391 6.50458 6.71902 7.03055 7.41702 7.67907 7.79634 8.21759 8.41690 8.62491 9.53435 10.11925 10.47952 11.45992 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.005723 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.117493 B = 4891.416482 C = 6904.436636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.517 3.483 3 O -0.551 6.551 4 N -0.597 5.597 5 C 0.077 3.923 6 C 0.100 3.900 7 C 0.505 3.495 8 O -0.532 6.532 9 N -0.595 5.595 10 C 0.083 3.917 11 C 0.162 3.838 12 H 0.101 0.899 13 C 0.143 3.857 14 N -0.727 5.727 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.158 4.158 24 C -0.183 4.183 25 C -0.174 4.174 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.386 0.614 40 H 0.254 0.746 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 10.935 -7.079 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.429 6.429 4 N -0.329 5.329 5 C -0.065 4.065 6 C -0.027 4.027 7 C 0.292 3.708 8 O -0.407 6.407 9 N -0.328 5.328 10 C -0.060 4.060 11 C 0.059 3.941 12 H 0.119 0.881 13 C 0.015 3.985 14 N -0.371 5.371 15 C -0.370 4.370 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.177 4.177 24 C -0.220 4.220 25 C -0.212 4.212 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.220 0.780 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.297 11.351 -6.550 13.305 hybrid contribution 0.245 -1.134 0.065 1.162 sum -2.052 10.218 -6.485 12.275 Atomic orbital electron populations 1.21954 0.91765 1.04801 1.04863 1.20766 0.90668 0.82945 0.75042 1.90687 1.70750 1.31226 1.50225 1.47480 1.05605 1.07179 1.72679 1.21948 0.96804 0.84742 1.03034 1.21362 0.80949 1.05010 0.95379 1.20953 0.82099 0.75933 0.91864 1.90672 1.59917 1.49263 1.40887 1.47583 1.05237 1.72955 1.07010 1.21695 0.96116 1.00672 0.87512 1.20786 0.95974 0.92890 0.84463 0.88058 1.21111 0.93520 0.86110 0.97756 1.42301 1.11816 1.00021 1.82989 1.19207 0.95273 0.83615 1.38872 0.91336 1.24717 0.95931 0.97642 1.02540 1.69686 1.06775 1.27829 1.53565 0.86217 0.78148 0.84539 0.77432 1.21780 1.21831 1.20840 1.22585 0.94083 0.99599 1.01459 1.23184 0.93567 1.03225 1.02004 1.22946 1.04395 1.02116 0.91704 0.89848 0.88848 0.89005 0.91524 0.90896 0.90249 0.87552 0.87220 0.93221 0.90274 0.91542 0.95594 0.95541 0.78016 0.93656 0.87944 0.87553 0.89311 0.89106 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.01 36.01 0.36 -1.40 16 2 C 0.52 7.76 7.77 -10.99 -0.09 7.67 16 3 O -0.55 -10.35 16.73 5.55 0.09 -10.25 16 4 N -0.60 -8.69 2.36 -182.95 -0.43 -9.12 16 5 C 0.08 0.94 10.01 59.85 0.60 1.54 16 6 C 0.10 1.49 4.44 -5.20 -0.02 1.47 16 7 C 0.51 9.51 7.45 -10.99 -0.08 9.43 16 8 O -0.53 -12.07 15.76 5.55 0.09 -11.98 16 9 N -0.59 -10.24 2.24 -173.95 -0.39 -10.63 16 10 C 0.08 1.14 9.61 59.85 0.58 1.71 16 11 C 0.16 2.93 2.59 -67.94 -0.18 2.76 16 12 H 0.10 2.14 6.90 -51.93 -0.36 1.78 16 13 C 0.14 2.89 4.14 -4.04 -0.02 2.88 16 14 N -0.73 -18.51 5.43 -59.91 -0.33 -18.84 16 15 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 16 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 17 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C -0.16 -2.29 5.48 -90.62 -0.50 -2.79 16 24 C -0.18 -2.32 9.59 -26.69 -0.26 -2.58 16 25 C -0.17 -2.27 9.94 -26.70 -0.27 -2.53 16 26 H 0.08 0.67 5.49 -51.93 -0.29 0.39 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.62 6.14 -51.92 -0.32 0.30 16 31 H 0.08 0.95 7.83 -51.93 -0.41 0.55 16 32 H 0.11 1.48 7.46 -51.93 -0.39 1.09 16 33 H 0.11 1.45 7.12 -51.92 -0.37 1.08 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.13 6.53 -51.93 -0.34 0.80 16 36 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 37 H 0.03 0.51 5.34 -51.93 -0.28 0.23 16 38 H 0.03 0.55 7.44 -51.92 -0.39 0.16 16 39 H 0.39 10.65 7.06 -40.82 -0.29 10.36 16 40 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.11 1.45 5.80 -51.93 -0.30 1.15 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.10 1.34 7.66 -51.93 -0.40 0.94 16 LS Contribution 363.31 15.07 5.47 5.47 Total: -1.00 -35.85 363.31 -6.86 -42.71 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.96 Total: 11.53 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -0.11 Total: 10.95 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.42 Total: -65.60 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.18 Total: -22.24 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.85 -6.86 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755556884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.872 kcal (2) G-P(sol) polarization free energy of solvation -35.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds