Wall clock time and date at job start Tue Mar 31 2020 03:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21283 * 119.99442 * 2 1 4 4 N 1.34775 * 120.00225 * 179.97438 * 2 1 3 5 5 C 1.46499 * 120.00115 * 355.30565 * 4 2 1 6 6 C 1.46500 * 119.99825 * 175.31480 * 4 2 1 7 7 C 1.50693 * 109.47632 * 90.00010 * 6 4 2 8 8 O 1.21285 * 119.99784 * 0.26967 * 7 6 4 9 9 N 1.34776 * 120.00246 * 179.97438 * 7 6 4 10 10 C 1.46497 * 119.99959 * 0.02562 * 9 7 6 11 11 C 1.46502 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.09002 * 109.46927 * 0.02562 * 11 9 7 13 13 C 1.52991 * 109.47020 * 120.00037 * 11 9 7 14 14 N 1.46503 * 109.47489 * 305.00001 * 13 11 9 15 15 C 1.36931 * 120.00252 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00386 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00041 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99922 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00048 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46888 * 90.00135 * 19 17 15 21 21 H 1.48503 * 109.46803 * 209.99972 * 19 17 15 22 22 H 1.48501 * 109.46997 * 329.99923 * 19 17 15 23 23 C 1.52996 * 109.47264 * 240.00281 * 11 9 7 24 24 C 1.53004 * 117.49904 * 248.74886 * 23 11 9 25 25 C 1.52993 * 117.50165 * 180.08896 * 23 11 9 26 26 H 1.09005 * 109.47145 * 185.21434 * 1 2 3 27 27 H 1.09003 * 109.47142 * 305.20889 * 1 2 3 28 28 H 1.08999 * 109.47057 * 65.21467 * 1 2 3 29 29 H 1.08998 * 109.47586 * 275.46717 * 5 4 2 30 30 H 1.09008 * 109.46936 * 35.46514 * 5 4 2 31 31 H 1.08999 * 109.46989 * 155.46019 * 5 4 2 32 32 H 1.08998 * 109.47326 * 329.98948 * 6 4 2 33 33 H 1.09007 * 109.46672 * 209.99972 * 6 4 2 34 34 H 1.08994 * 109.47223 * 89.99667 * 10 9 7 35 35 H 1.08998 * 109.46837 * 210.00194 * 10 9 7 36 36 H 1.09004 * 109.46685 * 329.99481 * 10 9 7 37 37 H 1.08999 * 109.47445 * 65.00128 * 13 11 9 38 38 H 1.09010 * 109.47426 * 184.99888 * 13 11 9 39 39 H 0.97005 * 119.99636 * 0.02562 * 14 13 11 40 40 H 0.96998 * 119.99382 * 180.02562 * 18 17 15 41 41 H 1.09002 * 115.54961 * 34.41513 * 23 11 9 42 42 H 1.09004 * 117.49577 * 359.97438 * 24 23 11 43 43 H 1.09005 * 117.50037 * 145.01632 * 24 23 11 44 44 H 1.09001 * 117.49891 * 214.97764 * 25 23 11 45 45 H 1.09003 * 117.50099 * 359.97316 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4522 -2.4337 0.1049 6 6 3.6422 -1.1692 -0.1031 7 6 4.2439 -1.1113 1.2773 8 8 3.5230 -1.0770 2.2520 9 7 5.5831 -1.1035 1.4290 10 6 6.4539 -1.1508 0.2518 11 6 6.1680 -1.0466 2.7709 12 1 5.3708 -1.0167 3.5137 13 6 7.0341 -2.2862 3.0027 14 7 6.2360 -3.4913 2.7640 15 6 6.8034 -4.7288 2.9118 16 1 7.8394 -4.8165 3.2040 17 6 6.0472 -5.8706 2.6851 18 7 4.7847 -5.7638 2.3285 19 14 6.8215 -7.5587 2.8860 20 1 6.6449 -8.0207 4.2862 21 1 6.1646 -8.5177 1.9618 22 1 8.2702 -7.4797 2.5697 23 6 7.0315 0.2100 2.8981 24 6 8.5454 0.0185 3.0098 25 6 7.7357 0.4510 4.2347 26 1 -0.3634 -1.0235 0.0934 27 1 -0.3633 0.5925 0.8397 28 1 -0.3633 0.4308 -0.9330 29 1 1.2593 -2.6566 1.1543 30 1 0.5054 -2.3533 -0.4294 31 1 2.0495 -3.2337 -0.3326 32 1 3.9670 -0.3019 -0.6778 33 1 3.9696 -2.0803 -0.6042 34 1 6.6686 -0.1358 -0.0823 35 1 7.3861 -1.6535 0.5095 36 1 5.9547 -1.6986 -0.5475 37 1 7.8819 -2.2704 2.3178 38 1 7.3975 -2.2888 4.0305 39 1 5.3055 -3.4126 2.5012 40 1 4.2563 -6.5617 2.1705 41 1 6.6735 1.0835 2.3531 42 1 8.9261 -1.0027 2.9931 43 1 9.1834 0.7663 2.5386 44 1 7.8414 1.4831 4.5690 45 1 7.5836 -0.2855 5.0238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755556884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:25 Heat of formation + Delta-G solvation = -36.331447 kcal Electronic energy + Delta-G solvation = -25552.869963 eV Core-core repulsion = 21992.663773 eV Total energy + Delta-G solvation = -3560.206189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55405 -40.48146 -38.92194 -36.53299 -36.35805 -35.76834 -33.15951 -31.77776 -30.01578 -28.65628 -27.69182 -27.03283 -25.82049 -24.07600 -23.13795 -21.77776 -20.28724 -19.83183 -19.05622 -18.44964 -18.09323 -17.69409 -17.08633 -16.69156 -16.47372 -16.25235 -15.82104 -15.34551 -15.06463 -14.72066 -14.65563 -14.38021 -14.10660 -13.93265 -13.76027 -13.60668 -13.28534 -13.12899 -13.04102 -12.96508 -12.91030 -12.74322 -12.52539 -12.32561 -12.25829 -11.99927 -11.76115 -11.43451 -11.11554 -10.98824 -10.96482 -10.80380 -9.72881 -9.57801 -8.99506 -7.92743 -5.22637 1.46100 1.46877 1.48985 1.56855 1.64029 1.88256 2.23284 2.55452 2.91286 3.39797 3.54751 3.66647 3.70021 3.93446 4.05017 4.10780 4.12498 4.24426 4.25410 4.26494 4.35422 4.41425 4.42374 4.59652 4.62587 4.66460 4.75571 4.80519 4.85551 4.93053 4.98008 5.02664 5.08952 5.12095 5.20068 5.28174 5.30393 5.48360 5.63649 6.26999 6.32624 6.43625 7.06881 7.21065 7.33839 8.07269 8.32898 9.30204 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.005723 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.117493 B = 4891.416482 C = 6904.436636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.505 3.495 3 O -0.597 6.597 4 N -0.601 5.601 5 C 0.076 3.924 6 C 0.102 3.898 7 C 0.492 3.508 8 O -0.584 6.584 9 N -0.595 5.595 10 C 0.078 3.922 11 C 0.170 3.830 12 H 0.060 0.940 13 C 0.148 3.852 14 N -0.739 5.739 15 C -0.246 4.246 16 H 0.076 0.924 17 C -0.070 4.070 18 N -0.964 5.964 19 Si 0.973 3.027 20 H -0.293 1.293 21 H -0.294 1.294 22 H -0.268 1.268 23 C -0.168 4.168 24 C -0.162 4.162 25 C -0.172 4.172 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.040 0.960 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.023 0.977 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.288 11.210 -8.395 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.296 3.704 3 O -0.478 6.478 4 N -0.332 5.332 5 C -0.065 4.065 6 C -0.024 4.024 7 C 0.280 3.720 8 O -0.463 6.463 9 N -0.327 5.327 10 C -0.063 4.063 11 C 0.065 3.935 12 H 0.078 0.922 13 C 0.021 3.979 14 N -0.382 5.382 15 C -0.377 4.377 16 H 0.094 0.906 17 C -0.263 4.263 18 N -0.615 5.615 19 Si 0.802 3.198 20 H -0.220 1.220 21 H -0.220 1.220 22 H -0.193 1.193 23 C -0.187 4.187 24 C -0.199 4.199 25 C -0.209 4.209 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.135 0.865 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.041 0.959 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.209 11.627 -7.880 14.098 hybrid contribution -0.032 -1.188 0.525 1.299 sum -1.241 10.439 -7.355 12.830 Atomic orbital electron populations 1.22003 0.87864 1.06520 1.06191 1.21709 0.92653 0.82228 0.73761 1.90653 1.72061 1.32711 1.52385 1.47702 1.05531 1.08033 1.71945 1.22070 0.98621 0.83796 1.02044 1.21430 0.81588 1.06325 0.93105 1.21741 0.82400 0.75033 0.92853 1.90635 1.61155 1.51819 1.42740 1.47738 1.05398 1.71886 1.07656 1.21933 0.95238 1.02714 0.86463 1.20529 0.94874 0.93723 0.84350 0.92164 1.21219 0.93700 0.85260 0.97709 1.42482 1.11582 1.01104 1.83022 1.19597 0.95594 0.84673 1.37866 0.90641 1.25527 0.96471 1.01278 1.03005 1.69851 1.08136 1.28450 1.55023 0.85161 0.77963 0.79867 0.76837 1.22008 1.22003 1.19256 1.22393 0.95015 0.97938 1.03403 1.23210 0.92066 1.03489 1.01135 1.23041 1.03636 1.03175 0.91045 0.87669 0.88768 0.86510 0.94100 0.86572 0.90238 0.86324 0.85419 0.90301 0.90797 0.90127 0.93802 0.95893 0.79665 0.94092 0.87393 0.88540 0.86487 0.86828 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 10.01 71.24 0.71 -2.35 16 2 C 0.51 14.98 7.77 87.66 0.68 15.66 16 3 O -0.60 -22.65 16.73 -3.04 -0.05 -22.70 16 4 N -0.60 -17.36 2.36 -851.13 -2.01 -19.37 16 5 C 0.08 1.82 10.01 127.77 1.28 3.09 16 6 C 0.10 3.06 4.44 85.63 0.38 3.44 16 7 C 0.49 19.10 7.45 87.66 0.65 19.75 16 8 O -0.58 -28.05 15.76 -3.04 -0.05 -28.10 16 9 N -0.59 -20.69 2.24 -822.63 -1.85 -22.53 16 10 C 0.08 2.04 9.61 127.77 1.23 3.26 16 11 C 0.17 6.26 2.59 44.99 0.12 6.38 16 12 H 0.06 2.72 6.90 -2.39 -0.02 2.70 16 13 C 0.15 6.03 4.14 86.38 0.36 6.39 16 14 N -0.74 -38.38 5.43 -343.45 -1.87 -40.25 16 15 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 18 N -0.96 -58.57 13.06 21.65 0.28 -58.28 16 19 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C -0.17 -4.74 5.48 -10.80 -0.06 -4.80 16 24 C -0.16 -3.73 9.59 30.62 0.29 -3.43 16 25 C -0.17 -4.22 9.94 30.62 0.30 -3.92 16 26 H 0.10 1.42 5.49 -2.38 -0.01 1.41 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 1.69 6.14 -2.38 -0.01 1.68 16 31 H 0.08 1.88 7.83 -2.39 -0.02 1.86 16 32 H 0.12 3.23 7.46 -2.39 -0.02 3.21 16 33 H 0.13 3.29 7.12 -2.38 -0.02 3.27 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 2.00 6.53 -2.39 -0.02 1.99 16 36 H 0.08 1.85 6.44 -2.38 -0.02 1.84 16 37 H 0.04 1.66 5.34 -2.39 -0.01 1.65 16 38 H 0.02 0.97 7.44 -2.38 -0.02 0.95 16 39 H 0.37 21.25 7.06 -92.70 -0.65 20.60 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.10 2.44 5.80 -2.39 -0.01 2.42 16 43 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.08 2.31 7.66 -2.39 -0.02 2.30 16 Total: -1.00 -80.60 363.31 4.09 -76.51 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.35 Total: 39.91 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 7.25 Total: 27.10 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -5.44 Total: -140.44 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.10 Total: -50.79 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -80.60 4.09 -76.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755556884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.181 kcal (2) G-P(sol) polarization free energy of solvation -80.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds