Wall clock time and date at job start Tue Mar 31 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47082 * 2 1 4 4 C 1.34771 * 120.00183 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99973 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99837 * 180.02562 * 4 3 2 7 7 C 1.50708 * 109.47058 * 180.02562 * 6 4 3 8 8 O 1.21277 * 119.99454 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99859 * 179.97438 * 7 6 4 10 10 C 1.48377 * 127.17363 * 359.79658 * 9 7 6 11 11 C 1.54941 * 103.37625 * 219.23685 * 10 9 7 12 12 H 1.09002 * 110.73789 * 81.06128 * 11 10 9 13 13 N 1.46500 * 110.74150 * 204.38905 * 11 10 9 14 14 C 1.36936 * 119.99987 * 268.41964 * 13 11 10 15 15 H 1.08004 * 119.99840 * 359.97438 * 14 13 11 16 16 C 1.38813 * 120.00225 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99743 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00153 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47324 * 90.00005 * 18 16 14 20 20 H 1.48497 * 109.47238 * 209.99874 * 18 16 14 21 21 H 1.48498 * 109.47286 * 330.00120 * 18 16 14 22 22 C 1.54616 * 102.83624 * 322.72418 * 11 10 9 23 23 C 1.52999 * 110.32768 * 262.95516 * 22 11 10 24 24 C 1.53001 * 110.32548 * 140.74040 * 22 11 10 25 25 C 1.47485 * 127.02912 * 180.02562 * 9 7 6 26 26 H 1.09005 * 109.47044 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46936 * 299.99433 * 1 2 3 28 28 H 1.08999 * 109.47297 * 59.99909 * 1 2 3 29 29 H 1.09003 * 109.46936 * 240.00567 * 2 1 3 30 30 H 1.08999 * 109.47526 * 120.00593 * 2 1 3 31 31 H 0.97001 * 119.99394 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47024 * 60.00567 * 6 4 3 33 33 H 1.08999 * 109.47223 * 300.00083 * 6 4 3 34 34 H 1.09005 * 110.51886 * 100.79140 * 10 9 7 35 35 H 1.09006 * 110.83140 * 337.82857 * 10 9 7 36 36 H 0.96994 * 120.00094 * 88.41638 * 13 11 10 37 37 H 0.97003 * 119.99764 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46892 * 177.07163 * 23 22 11 39 39 H 1.09000 * 109.47199 * 297.07499 * 23 22 11 40 40 H 1.09000 * 109.46597 * 57.07746 * 23 22 11 41 41 H 1.09002 * 109.47188 * 302.92319 * 24 22 11 42 42 H 1.08995 * 109.47348 * 62.92512 * 24 22 11 43 43 H 1.09002 * 109.47358 * 182.92520 * 24 22 11 44 44 H 1.09002 * 109.91598 * 35.15596 * 25 9 7 45 45 H 1.08999 * 109.91369 * 274.06677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1315 0.7058 0.0005 6 6 3.8456 3.0484 0.0011 7 6 5.3526 3.0485 0.0010 8 8 5.9590 1.9982 0.0000 9 7 6.0264 4.2158 0.0009 10 6 5.4507 5.5833 -0.0032 11 6 6.3905 6.3650 -0.9553 12 1 6.1259 6.1801 -1.9964 13 7 6.3561 7.7988 -0.6564 14 6 5.4688 8.6129 -1.3083 15 1 4.7946 8.1981 -2.0431 16 6 5.4357 9.9714 -1.0248 17 7 6.2570 10.4768 -0.1290 18 14 4.2258 11.0821 -1.9146 19 1 2.9552 11.1442 -1.1485 20 1 4.8002 12.4464 -2.0319 21 1 3.9600 10.5386 -3.2707 22 6 7.7805 5.7711 -0.6298 23 6 8.5213 6.6666 0.3653 24 6 8.6009 5.6057 -1.9106 25 6 7.4902 4.3964 0.0003 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.3879 2.1185 0.0004 32 1 3.4820 3.5620 0.8912 33 1 3.4825 3.5625 -0.8888 34 1 5.4756 6.0114 0.9989 35 1 4.4319 5.5738 -0.3908 36 1 6.9618 8.1714 0.0032 37 1 6.2341 11.4262 0.0688 38 1 9.4761 6.2093 0.6246 39 1 8.6967 7.6433 -0.0856 40 1 7.9187 6.7849 1.2659 41 1 8.0545 4.9768 -2.6134 42 1 8.7762 6.5837 -2.3587 43 1 9.5566 5.1388 -1.6722 44 1 7.9610 3.6104 -0.5902 45 1 7.8680 4.3695 1.0223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755755996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:25 Heat of formation + Delta-G solvation = -56.734192 kcal Electronic energy + Delta-G solvation = -24707.008497 eV Core-core repulsion = 21145.917578 eV Total energy + Delta-G solvation = -3561.090919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31777 -39.33185 -37.64821 -35.30384 -34.10316 -33.21693 -31.58215 -30.84062 -29.67459 -27.50732 -26.99554 -25.88964 -23.92477 -23.23011 -21.70122 -20.89638 -19.02506 -18.45627 -17.50197 -17.23646 -16.31025 -16.18232 -15.81932 -15.47258 -14.91060 -14.76627 -14.25504 -13.95086 -13.77794 -13.55514 -13.42622 -13.12315 -12.80488 -12.74310 -12.55064 -12.17780 -12.12524 -11.89429 -11.75401 -11.65055 -11.50041 -11.19533 -11.02187 -10.95565 -10.54624 -10.45997 -10.23724 -10.04192 -9.91413 -9.70812 -9.25132 -9.19797 -9.05261 -8.32020 -7.09125 -5.88801 -3.18693 2.62257 2.79184 2.93463 3.35624 3.41087 3.43333 3.46037 4.45833 4.51467 4.65054 4.79301 4.81664 5.02766 5.05831 5.09261 5.14484 5.23283 5.25723 5.46918 5.51557 5.62149 5.64534 5.68504 5.74100 5.82101 5.92756 6.01092 6.06973 6.16232 6.20194 6.28952 6.32194 6.33542 6.42867 6.55561 6.65919 6.76576 6.92696 7.34832 7.59673 7.86316 8.19379 8.29695 8.49914 9.41817 9.96782 10.31899 11.33356 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014401 B = 0.003766 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.823020 B = 7432.661728 C = 9027.834566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.739 5.739 4 C 0.513 3.487 5 O -0.495 6.495 6 C -0.161 4.161 7 C 0.530 3.470 8 O -0.512 6.512 9 N -0.621 5.621 10 C 0.072 3.928 11 C 0.179 3.821 12 H 0.065 0.935 13 N -0.713 5.713 14 C -0.248 4.248 15 H 0.071 0.929 16 C -0.008 4.008 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.088 4.088 23 C -0.135 4.135 24 C -0.131 4.131 25 C 0.121 3.879 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.391 0.609 37 H 0.257 0.743 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 -13.985 0.799 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.395 5.395 4 C 0.297 3.703 5 O -0.367 6.367 6 C -0.204 4.204 7 C 0.316 3.684 8 O -0.386 6.386 9 N -0.356 5.356 10 C -0.053 4.053 11 C 0.066 3.934 12 H 0.083 0.917 13 N -0.355 5.355 14 C -0.379 4.379 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.090 4.090 23 C -0.193 4.193 24 C -0.188 4.188 25 C -0.002 4.002 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.229 0.771 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.469 -15.240 0.693 16.570 hybrid contribution -1.024 1.376 -0.157 1.723 sum -7.493 -13.864 0.535 15.768 Atomic orbital electron populations 1.22004 0.94499 1.03140 1.02562 1.21248 0.94048 0.83132 1.02363 1.46059 1.07017 1.08828 1.77565 1.20093 0.82186 0.90958 0.77073 1.90852 1.54427 1.45539 1.45833 1.21554 0.95574 0.96528 1.06735 1.19464 0.88538 0.82605 0.77751 1.90823 1.69364 1.29889 1.48506 1.48853 1.07855 1.05989 1.72918 1.23756 0.99245 0.80282 1.02041 1.21260 0.90432 0.85445 0.96265 0.91675 1.42597 1.43982 1.00470 1.48495 1.19258 1.12300 0.89352 1.16953 0.91101 1.24745 0.99486 0.96910 0.99354 1.69650 1.39726 1.12696 1.35655 0.86202 0.80548 0.80330 0.79138 1.21667 1.21761 1.20713 1.21717 0.97402 0.93786 0.96078 1.21748 0.98777 1.00207 0.98521 1.21789 0.98763 1.02037 0.96229 1.22098 0.80615 0.97068 1.00462 0.90894 0.91949 0.91930 0.91623 0.91642 0.76668 0.86206 0.86097 0.90912 0.90960 0.77145 0.93342 0.93373 0.90664 0.92411 0.93014 0.91764 0.93146 0.91065 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 10.03 37.16 0.37 -0.51 16 2 C 0.12 0.99 6.39 -4.04 -0.03 0.96 16 3 N -0.74 -6.86 5.56 -60.29 -0.33 -7.20 16 4 C 0.51 6.89 7.82 -10.99 -0.09 6.80 16 5 O -0.49 -9.23 14.18 -18.96 -0.27 -9.50 16 6 C -0.16 -1.91 5.14 -29.03 -0.15 -2.06 16 7 C 0.53 8.74 7.89 -10.98 -0.09 8.65 16 8 O -0.51 -10.60 14.52 -18.96 -0.28 -10.88 16 9 N -0.62 -9.78 3.30 -169.55 -0.56 -10.34 16 10 C 0.07 1.15 6.63 -1.98 -0.01 1.14 16 11 C 0.18 3.23 3.15 -66.06 -0.21 3.02 16 12 H 0.07 1.23 7.81 -51.93 -0.41 0.82 16 13 N -0.71 -16.00 4.97 -51.61 -0.26 -16.26 16 14 C -0.25 -6.27 9.96 -15.06 -0.15 -6.42 16 15 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -26.26 13.06 55.49 0.72 -25.53 16 18 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.09 -1.39 0.95 -153.15 -0.15 -1.53 16 23 C -0.13 -2.13 7.02 37.16 0.26 -1.87 16 24 C -0.13 -1.91 8.23 37.16 0.31 -1.61 16 25 C 0.12 1.87 6.28 -2.99 -0.02 1.85 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 2.46 8.47 -40.82 -0.35 2.11 16 32 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.12 1.15 7.92 -51.93 -0.41 0.74 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.04 7.27 -51.93 -0.38 0.67 16 36 H 0.39 9.27 5.13 -40.82 -0.21 9.06 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.35 7.00 -51.93 -0.36 0.99 16 40 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 41 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.13 7.59 -51.93 -0.39 0.74 16 45 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -33.63 363.96 -8.06 -41.69 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.51 Total: 8.42 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.04 Total: 8.12 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.43 Total: -59.33 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.54 Total: -20.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.63 -8.06 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755755996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.043 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds