Wall clock time and date at job start Tue Mar 31 2020 03:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47393 * 210.02484 * 3 2 1 5 5 C 1.36886 * 120.00049 * 265.66209 * 4 3 2 6 6 H 1.07998 * 119.99734 * 196.04891 * 5 4 3 7 7 C 1.39038 * 119.99902 * 16.04769 * 5 4 3 8 8 N 1.31376 * 120.00172 * 13.53304 * 7 5 4 9 9 Si 1.86794 * 119.99886 * 193.53285 * 7 5 4 10 10 H 1.48501 * 109.47038 * 90.00143 * 9 7 5 11 11 H 1.48503 * 109.47444 * 209.99782 * 9 7 5 12 12 H 1.48502 * 109.47324 * 329.99915 * 9 7 5 13 13 C 1.34784 * 120.00053 * 85.65627 * 4 3 2 14 14 O 1.21595 * 119.99714 * 4.09240 * 13 4 3 15 15 C 1.47655 * 119.99994 * 184.09232 * 13 4 3 16 16 C 1.39685 * 120.15432 * 306.13082 * 15 13 4 17 17 C 1.37996 * 119.84418 * 179.76980 * 16 15 13 18 18 Cl 1.73598 * 119.91953 * 180.22958 * 17 16 15 19 19 C 1.38541 * 120.15947 * 0.50868 * 17 16 15 20 20 C 1.38273 * 120.32040 * 359.74236 * 19 17 16 21 21 C 1.38138 * 120.14572 * 0.02562 * 20 19 17 22 22 Cl 1.73601 * 120.07690 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47184 * 90.02163 * 3 2 1 24 24 H 1.09002 * 109.47129 * 330.02424 * 3 2 1 25 25 H 0.96997 * 119.99917 * 180.02562 * 8 7 5 26 26 H 1.08001 * 120.07882 * 0.02562 * 16 15 13 27 27 H 1.08005 * 119.84170 * 179.72452 * 19 17 16 28 28 H 1.07999 * 119.92907 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0958 1.1967 0.6911 5 6 3.4080 2.3211 -0.0244 6 1 4.0016 3.1017 0.4282 7 6 2.9610 2.4583 -1.3338 8 7 2.0312 1.6547 -1.7981 9 14 3.6825 3.7853 -2.4328 10 1 4.8614 3.2431 -3.1549 11 1 2.6594 4.2248 -3.4153 12 1 4.1003 4.9431 -1.6019 13 6 3.2371 1.1900 2.0315 14 8 3.0312 0.1693 2.6594 15 6 3.6420 2.4221 2.7374 16 6 4.7983 3.1041 2.3514 17 6 5.1681 4.2576 3.0125 18 17 6.6016 5.1101 2.5306 19 6 4.4014 4.7339 4.0635 20 6 3.2583 4.0613 4.4545 21 6 2.8735 2.9080 3.7987 22 17 1.4384 2.0645 4.2915 23 1 2.9713 0.0012 -1.0276 24 1 2.9717 -0.8894 0.5135 25 1 1.7197 1.7502 -2.7117 26 1 5.3993 2.7318 1.5350 27 1 4.6980 5.6348 4.5801 28 1 2.6655 4.4379 5.2749 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000060713.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:20 Heat of formation + Delta-G solvation = 9.267666 kcal Electronic energy + Delta-G solvation = -19234.933716 eV Core-core repulsion = 15917.072142 eV Total energy + Delta-G solvation = -3317.861574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 298.002 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.28252 -39.56801 -37.77577 -37.40189 -37.12800 -36.35915 -33.58085 -32.59243 -31.48640 -29.31544 -26.89691 -24.56523 -23.72933 -21.42610 -20.13715 -18.73668 -18.01862 -17.60598 -16.99615 -16.61802 -16.22929 -15.93843 -15.33182 -15.03692 -14.79480 -14.56560 -14.45144 -13.73531 -13.50542 -13.40558 -13.27059 -13.13160 -12.95633 -12.88607 -12.36702 -12.15510 -12.08861 -11.96784 -11.91556 -11.81117 -11.20962 -10.63823 -10.11112 -9.90582 -9.60013 -8.37896 -5.99834 -0.19456 0.04486 0.97050 1.19392 1.41696 1.52629 1.61457 1.71805 1.96335 2.25579 2.35112 2.48731 2.97563 3.05367 3.64770 3.70469 3.86381 4.09774 4.19114 4.36651 4.65495 4.78829 4.85734 4.94434 5.05236 5.13189 5.41790 5.51313 5.58891 6.29800 6.98071 7.02025 7.34661 7.74815 8.63755 Molecular weight = 298.00amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.008456 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.369368 B = 3310.290636 C = 5072.168920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.267 3.733 3 C 0.230 3.770 4 N -0.434 5.434 5 C -0.354 4.354 6 H 0.126 0.874 7 C 0.005 3.995 8 N -0.896 5.896 9 Si 0.984 3.016 10 H -0.262 1.262 11 H -0.294 1.294 12 H -0.258 1.258 13 C 0.491 3.509 14 O -0.602 6.602 15 C -0.089 4.089 16 C -0.071 4.071 17 C -0.040 4.040 18 Cl -0.051 7.051 19 C -0.078 4.078 20 C -0.097 4.097 21 C -0.020 4.020 22 Cl -0.068 7.068 23 H 0.141 0.859 24 H 0.105 0.895 25 H 0.275 0.725 26 H 0.151 0.849 27 H 0.181 0.819 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 8.291 7.180 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.050 4.050 3 C 0.104 3.896 4 N -0.152 5.152 5 C -0.480 4.480 6 H 0.143 0.857 7 C -0.198 4.198 8 N -0.534 5.534 9 Si 0.808 3.192 10 H -0.187 1.187 11 H -0.220 1.220 12 H -0.182 1.182 13 C 0.281 3.719 14 O -0.488 6.488 15 C -0.093 4.093 16 C -0.090 4.090 17 C -0.067 4.067 18 Cl -0.022 7.022 19 C -0.097 4.097 20 C -0.116 4.116 21 C -0.047 4.047 22 Cl -0.038 7.038 23 H 0.159 0.841 24 H 0.123 0.877 25 H 0.085 0.915 26 H 0.169 0.831 27 H 0.198 0.802 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.549 7.739 7.264 13.025 hybrid contribution 0.153 0.285 -0.987 1.038 sum 7.703 8.024 6.278 12.772 Atomic orbital electron populations 1.80838 1.14749 1.11317 1.12896 1.29700 0.95819 0.90186 0.89274 1.18890 0.80115 0.88997 1.01634 1.43737 1.54991 1.12276 1.04192 1.20412 1.33162 0.98736 0.95699 0.85714 1.26051 0.94672 1.00015 0.99053 1.69918 1.25947 1.39688 1.17879 0.85021 0.77907 0.78402 0.77878 1.18700 1.22001 1.18211 1.18293 0.83163 0.88300 0.82164 1.90676 1.57455 1.33984 1.66712 1.19659 0.96523 0.96733 0.96407 1.21246 0.95255 0.93519 0.99002 1.20931 0.91966 0.95113 0.98651 1.98372 1.36482 1.76087 1.91298 1.21434 0.92660 1.00790 0.94790 1.21232 0.97497 0.92262 1.00602 1.21269 0.90444 0.96014 0.97020 1.98381 1.37120 1.77949 1.90397 0.84136 0.87694 0.91495 0.83100 0.80205 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.95 18.54 20.00 0.37 -26.58 15 2 C 0.27 13.08 13.68 89.44 1.22 14.30 15 3 C 0.23 9.99 5.12 84.57 0.43 10.42 15 4 N -0.43 -19.62 2.59 -648.91 -1.68 -21.30 15 5 C -0.35 -15.61 8.80 84.10 0.74 -14.87 15 6 H 0.13 5.12 4.42 -2.91 -0.01 5.11 15 7 C 0.00 0.21 5.09 84.95 0.43 0.64 15 8 N -0.90 -42.73 8.93 21.68 0.19 -42.53 15 9 Si 0.98 35.82 29.57 68.60 2.03 37.85 15 10 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 11 H -0.29 -11.22 7.11 99.48 0.71 -10.52 15 12 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 13 C 0.49 22.03 6.54 86.73 0.57 22.60 15 14 O -0.60 -29.56 15.75 -4.02 -0.06 -29.62 15 15 C -0.09 -3.39 5.09 -20.07 -0.10 -3.49 15 16 C -0.07 -2.27 7.29 22.56 0.16 -2.10 15 17 C -0.04 -1.02 6.31 22.28 0.14 -0.88 15 18 Cl -0.05 -1.14 28.95 -2.72 -0.08 -1.22 15 19 C -0.08 -1.66 9.82 22.35 0.22 -1.44 15 20 C -0.10 -2.38 9.82 22.25 0.22 -2.16 15 21 C -0.02 -0.67 6.35 22.61 0.14 -0.53 15 22 Cl -0.07 -2.50 27.35 -2.72 -0.07 -2.58 15 23 H 0.14 5.96 6.16 -2.39 -0.01 5.95 15 24 H 0.11 4.15 7.50 -2.39 -0.02 4.13 15 25 H 0.27 12.78 8.31 -92.71 -0.77 12.01 15 26 H 0.15 4.80 7.05 -2.91 -0.02 4.78 15 27 H 0.18 2.38 8.06 -2.91 -0.02 2.36 15 28 H 0.17 3.07 8.06 -2.91 -0.02 3.04 15 Total: -1.00 -59.43 286.47 6.11 -53.32 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.24 Total: 10.18 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 4.18 Total: 22.49 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -1.12 Total: -90.42 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.06 Total: -29.62 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.15 Total: -3.80 kcal Total: -59.43 6.11 -53.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000060713.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.583 kcal (2) G-P(sol) polarization free energy of solvation -59.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds