Wall clock time and date at job start Tue Mar 31 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47418 * 36.45572 * 3 2 1 5 5 C 1.36892 * 119.99974 * 128.44253 * 4 3 2 6 6 H 1.07998 * 119.99797 * 116.89813 * 5 4 3 7 7 C 1.39030 * 120.00071 * 297.16657 * 5 4 3 8 8 N 1.31377 * 119.99613 * 37.48326 * 7 5 4 9 9 Si 1.86799 * 120.00124 * 217.47777 * 7 5 4 10 10 H 1.48499 * 109.47076 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46892 * 120.00306 * 9 7 5 12 12 H 1.48502 * 109.47128 * 240.00086 * 9 7 5 13 13 C 1.34776 * 119.99713 * 308.44305 * 4 3 2 14 14 O 1.21608 * 119.99831 * 186.79162 * 13 4 3 15 15 C 1.47588 * 120.00251 * 6.79591 * 13 4 3 16 16 C 1.39732 * 120.14713 * 337.25293 * 15 13 4 17 17 C 1.37821 * 119.87333 * 179.72164 * 16 15 13 18 18 C 1.38588 * 120.17324 * 0.58576 * 17 16 15 19 19 Cl 1.73604 * 119.84988 * 179.71429 * 18 17 16 20 20 C 1.38438 * 120.30069 * 359.69173 * 18 17 16 21 21 C 1.38068 * 120.12533 * 0.02562 * 20 18 17 22 22 Cl 1.73598 * 120.08854 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.47481 * 276.44945 * 3 2 1 24 24 H 1.09006 * 109.47039 * 156.45513 * 3 2 1 25 25 H 0.97001 * 119.99113 * 179.97438 * 8 7 5 26 26 H 1.08003 * 120.06137 * 0.03396 * 16 15 13 27 27 H 1.07999 * 119.91130 * 180.30049 * 17 16 15 28 28 H 1.08000 * 119.94032 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -1.1100 -0.8207 5 6 4.0198 -0.8792 -1.8050 6 1 4.9982 -1.3325 -1.7447 7 6 3.6996 -0.0569 -2.8793 8 7 2.9612 1.0131 -2.6901 9 14 4.3194 -0.4733 -4.5915 10 1 5.1237 -1.7205 -4.5371 11 1 3.1630 -0.6699 -5.5022 12 1 5.1637 0.6391 -5.0965 13 6 2.6379 -2.3590 -0.6066 14 8 3.1313 -3.2983 -1.2008 15 6 1.5363 -2.5868 0.3488 16 6 1.2809 -1.6569 1.3601 17 6 0.2471 -1.8725 2.2457 18 6 -0.5314 -3.0144 2.1431 19 17 -1.8267 -3.2811 3.2677 20 6 -0.2811 -3.9432 1.1475 21 6 0.7477 -3.7369 0.2501 22 17 1.0611 -4.9026 -0.9975 23 1 2.9714 -0.1146 1.0211 24 1 2.9709 0.9430 -0.4105 25 1 2.7382 1.5871 -3.4396 26 1 1.8893 -0.7685 1.4444 27 1 0.0461 -1.1518 3.0246 28 1 -0.8917 -4.8309 1.0727 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000075794.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:19 Heat of formation + Delta-G solvation = 74.866257 kcal Electronic energy + Delta-G solvation = -19440.576549 eV Core-core repulsion = 16125.559543 eV Total energy + Delta-G solvation = -3315.017006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 298.002 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42061 -37.97439 -36.74345 -36.52588 -35.70497 -34.54774 -32.36731 -30.75812 -30.48819 -27.84605 -25.34883 -23.00080 -22.73347 -20.15436 -17.74638 -17.56008 -17.01635 -16.32876 -15.69188 -15.00865 -14.69453 -14.45075 -14.11813 -13.97097 -13.48448 -13.33864 -12.73172 -12.30271 -12.22875 -12.02092 -11.86936 -11.74966 -11.56486 -11.40812 -11.19567 -10.82523 -10.61395 -10.50120 -10.43699 -10.34588 -8.80415 -8.67386 -8.59939 -8.49734 -7.69874 -6.76996 -4.34908 0.87017 1.17906 1.93299 2.53407 3.10320 3.15024 3.20782 3.26807 3.39752 3.49840 3.96768 4.16099 4.42251 4.65713 4.67511 4.74070 4.97636 5.24429 5.31183 5.45905 5.59059 5.86799 6.03106 6.15422 6.21161 6.44834 6.58390 7.32185 8.11423 8.20056 8.24912 8.86540 8.96506 9.67019 10.30117 Molecular weight = 298.00amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.005854 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.880290 B = 4782.055001 C = 5655.299421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.215 3.785 3 C 0.175 3.825 4 N -0.434 5.434 5 C -0.352 4.352 6 H 0.095 0.905 7 C 0.082 3.918 8 N -0.833 5.833 9 Si 0.893 3.107 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.516 3.484 14 O -0.524 6.524 15 C -0.108 4.108 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.010 4.010 19 Cl -0.069 7.069 20 C -0.120 4.120 21 C 0.020 3.980 22 Cl -0.030 7.030 23 H 0.089 0.911 24 H 0.146 0.854 25 H 0.276 0.724 26 H 0.179 0.821 27 H 0.137 0.863 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -2.939 9.446 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.101 4.101 3 C 0.050 3.950 4 N -0.157 5.157 5 C -0.478 4.478 6 H 0.113 0.887 7 C -0.131 4.131 8 N -0.464 5.464 9 Si 0.718 3.282 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.304 3.696 14 O -0.402 6.402 15 C -0.114 4.114 16 C -0.124 4.124 17 C -0.131 4.131 18 C -0.037 4.037 19 Cl -0.040 7.040 20 C -0.140 4.140 21 C -0.009 4.009 22 Cl -0.001 7.001 23 H 0.106 0.894 24 H 0.164 0.836 25 H 0.086 0.914 26 H 0.195 0.805 27 H 0.155 0.845 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.382 -3.339 9.006 11.010 hybrid contribution 0.262 -0.055 -0.892 0.931 sum -5.120 -3.394 8.115 10.178 Atomic orbital electron populations 1.81140 1.13205 1.09445 1.08926 1.29330 0.96178 0.92168 0.92396 1.20051 0.80020 0.98492 0.96434 1.43089 1.38143 1.02780 1.31721 1.18924 0.96364 1.34016 0.98474 0.88729 1.25672 0.94474 0.93123 0.99789 1.69934 1.35082 1.08440 1.32954 0.86481 0.79167 0.79690 0.82882 1.18353 1.20381 1.20819 1.18205 0.83044 0.84992 0.83394 1.90722 1.58650 1.40715 1.50139 1.20381 0.98802 0.94181 0.98014 1.22757 0.97645 0.99296 0.92736 1.20922 0.95426 0.96367 1.00344 1.20818 0.92592 0.96623 0.93681 1.98358 1.48696 1.96392 1.60572 1.20739 0.98340 1.00403 0.94494 1.20736 0.95816 0.91781 0.92523 1.98402 1.94961 1.56157 1.50549 0.89360 0.83603 0.91360 0.80540 0.84494 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.03 17.13 42.11 0.72 -8.30 15 2 C 0.21 4.07 10.40 -20.76 -0.22 3.86 15 3 C 0.18 3.17 5.15 -6.83 -0.04 3.13 15 4 N -0.43 -9.68 2.75 -120.09 -0.33 -10.01 15 5 C -0.35 -8.60 8.36 -15.00 -0.13 -8.72 15 6 H 0.10 2.37 8.04 -52.49 -0.42 1.95 15 7 C 0.08 1.97 5.42 -17.45 -0.09 1.87 15 8 N -0.83 -19.89 11.81 55.50 0.66 -19.24 15 9 Si 0.89 19.50 29.68 -169.99 -5.05 14.46 15 10 H -0.26 -5.84 7.11 56.52 0.40 -5.44 15 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 12 H -0.28 -5.94 7.11 56.52 0.40 -5.53 15 13 C 0.52 11.71 7.19 -12.45 -0.09 11.62 15 14 O -0.52 -13.29 14.42 5.27 0.08 -13.21 15 15 C -0.11 -2.10 5.08 -104.94 -0.53 -2.63 15 16 C -0.11 -1.72 5.62 -39.18 -0.22 -1.94 15 17 C -0.11 -1.62 9.31 -39.60 -0.37 -1.99 15 18 C -0.01 -0.14 6.33 -39.38 -0.25 -0.39 15 19 Cl -0.07 -0.86 28.95 -51.86 -1.50 -2.36 15 20 C -0.12 -1.86 9.60 -39.57 -0.38 -2.24 15 21 C 0.02 0.37 6.34 -39.06 -0.25 0.12 15 22 Cl -0.03 -0.57 26.30 -51.86 -1.36 -1.93 15 23 H 0.09 1.21 6.22 -51.93 -0.32 0.89 15 24 H 0.15 2.78 6.44 -51.93 -0.33 2.44 15 25 H 0.28 6.32 8.31 -40.82 -0.34 5.98 15 26 H 0.18 2.57 2.82 -54.17 -0.15 2.41 15 27 H 0.14 1.66 8.06 -52.49 -0.42 1.24 15 28 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 279.09 15.07 4.21 4.21 Total: -1.00 -27.82 279.09 -6.35 -34.18 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -1.21 Total: -0.46 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.56 Total: 2.68 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 1.05 Total: -37.55 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.05 Total: 14.46 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -2.86 Total: -4.29 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.82 -6.35 -34.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000075794.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.043 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds