Wall clock time and date at job start Tue Mar 31 2020 03:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00211 * 2 1 4 4 C 1.52997 * 109.47163 * 293.95572 * 3 2 1 5 5 N 1.46496 * 109.47353 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00148 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00015 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.47040 * 40.00411 * 8 6 5 10 10 N 1.46907 * 109.46992 * 160.00200 * 8 6 5 11 11 C 1.52999 * 109.47277 * 280.00132 * 8 6 5 12 12 C 1.52999 * 109.47080 * 174.99792 * 11 8 6 13 13 C 1.50704 * 109.47071 * 180.02562 * 12 11 8 14 14 H 1.07992 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99822 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00112 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99805 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47288 * 60.00271 * 17 15 13 19 19 H 1.48504 * 109.47034 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46919 * 299.99840 * 17 15 13 21 21 C 1.46904 * 111.00110 * 123.95738 * 2 1 3 22 22 C 1.55238 * 110.46809 * 170.85473 * 21 2 1 23 23 C 1.54894 * 102.58338 * 203.38989 * 22 21 2 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 1.09004 * 109.47407 * 296.04535 * 1 2 3 27 27 H 1.08995 * 109.47353 * 56.04663 * 1 2 3 28 28 H 1.09007 * 109.47186 * 176.04859 * 1 2 3 29 29 H 1.08998 * 109.47176 * 53.95358 * 3 2 1 30 30 H 1.08996 * 109.47396 * 173.95524 * 3 2 1 31 31 H 1.09007 * 109.47148 * 300.00081 * 4 3 2 32 32 H 1.09007 * 109.47462 * 59.99519 * 4 3 2 33 33 H 0.97004 * 120.00109 * 359.97438 * 5 4 3 34 34 H 1.00903 * 110.99632 * 60.00103 * 10 8 6 35 35 H 1.00894 * 110.99681 * 183.95344 * 10 8 6 36 36 H 1.08998 * 109.47163 * 295.00257 * 11 8 6 37 37 H 1.09003 * 109.46721 * 55.00353 * 11 8 6 38 38 H 1.08998 * 109.47502 * 300.00258 * 12 11 8 39 39 H 1.09002 * 109.46917 * 60.00108 * 12 11 8 40 40 H 0.97002 * 119.99900 * 179.97438 * 16 15 13 41 41 H 1.09007 * 110.42882 * 293.50494 * 21 2 1 42 42 H 1.08996 * 110.89448 * 85.10553 * 22 21 2 43 43 H 1.08993 * 110.76342 * 321.62219 * 22 21 2 44 44 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 45 45 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 46 46 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 47 47 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 48 48 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 49 49 H 1.09003 * 110.03070 * 240.71854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 7 2.1559 3.4253 -1.3180 6 6 1.9554 4.2241 -2.3849 7 8 1.3403 3.8107 -3.3448 8 6 2.4944 5.6314 -2.3844 9 1 3.4863 5.6404 -1.9323 10 7 2.5816 6.1229 -3.7660 11 6 1.5589 6.5357 -1.5794 12 6 2.1685 7.9350 -1.4736 13 6 1.2472 8.8255 -0.6802 14 1 0.3200 8.4326 -0.2901 15 6 1.5882 10.1419 -0.4523 16 7 2.7177 10.6202 -0.9269 17 14 0.4467 11.2455 0.5317 18 1 0.2648 10.6812 1.8932 19 1 1.0377 12.6040 0.6333 20 1 -0.8701 11.3288 -0.1498 21 6 1.9954 -0.7661 1.1376 22 6 3.5305 -0.9534 1.0020 23 6 3.7938 -2.2145 1.8619 24 6 2.5788 -3.1243 1.5867 25 6 1.4354 -2.2034 1.1261 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3634 -1.0253 -0.0708 29 1 1.5611 1.9273 0.8309 30 1 3.0797 1.3444 0.1082 31 1 2.0658 1.5015 -2.1492 32 1 0.5471 2.0845 -1.4265 33 1 2.6476 3.7561 -0.5500 34 1 1.6741 6.1242 -4.2072 35 1 3.0003 7.0402 -3.7977 36 1 0.5929 6.5971 -2.0806 37 1 1.4242 6.1215 -0.5802 38 1 3.1345 7.8736 -0.9724 39 1 2.3032 8.3491 -2.4728 40 1 2.9574 11.5464 -0.7669 41 1 1.7514 -0.2690 2.0765 42 1 4.0643 -0.0928 1.4049 43 1 3.8079 -1.1296 -0.0372 44 1 3.8423 -1.9523 2.9188 45 1 4.7158 -2.7042 1.5486 46 1 2.8196 -3.8416 0.8020 47 1 2.2921 -3.6500 2.4974 48 1 1.1212 -2.4736 0.1179 49 1 0.5932 -2.2814 1.8136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424157607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:10 Heat of formation + Delta-G solvation = -59.522039 kcal Electronic energy + Delta-G solvation = -24012.866527 eV Core-core repulsion = 20587.487813 eV Total energy + Delta-G solvation = -3425.378714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.76374 -39.20147 -36.38590 -35.42132 -34.23095 -32.84657 -30.00850 -29.84541 -29.12837 -27.86081 -26.54468 -25.13974 -23.61902 -21.84063 -20.81161 -20.63675 -20.01763 -19.65989 -17.32594 -16.87354 -16.22477 -16.21210 -15.74921 -15.41036 -14.84428 -14.64898 -14.53396 -14.35735 -13.95399 -13.73678 -13.70665 -13.44550 -12.95036 -12.88573 -12.40543 -12.21967 -12.15639 -11.87174 -11.68935 -11.59156 -11.33097 -11.16950 -11.10588 -11.09225 -11.00705 -10.91044 -10.79920 -10.71416 -9.98950 -9.90868 -9.29768 -9.20768 -8.93411 -8.67510 -8.44504 -8.17005 -6.09187 -4.12408 2.97609 3.08284 3.27549 3.32507 3.34845 3.79888 4.16151 4.30788 4.38563 4.55650 4.67362 4.84205 4.96515 5.03538 5.11975 5.14417 5.18502 5.20379 5.21127 5.26924 5.29421 5.33953 5.36264 5.52821 5.57329 5.59509 5.64901 5.72542 5.76102 5.79632 5.80239 5.83106 5.96160 6.00617 6.28711 6.49655 6.53010 6.73861 6.78589 6.87313 7.44776 7.51495 7.61280 7.72655 7.87769 7.92612 8.30451 8.50243 8.93321 9.52348 11.01638 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.002421 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.264818 B =11560.329070 C =12187.706032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.042 3.958 4 C 0.125 3.875 5 N -0.735 5.735 6 C 0.526 3.474 7 O -0.538 6.538 8 C 0.075 3.925 9 H 0.096 0.904 10 N -0.831 5.831 11 C -0.137 4.137 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.078 3.922 22 C -0.117 4.117 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.119 4.119 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.345 0.655 35 H 0.354 0.646 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -25.116 5.798 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.086 4.086 4 C 0.001 3.999 5 N -0.389 5.389 6 C 0.313 3.687 7 O -0.414 6.414 8 C -0.040 4.040 9 H 0.114 0.886 10 N -0.363 5.363 11 C -0.177 4.177 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.030 4.030 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.160 4.160 25 C -0.156 4.156 26 H 0.045 0.955 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.159 0.841 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.023 -26.119 4.508 26.525 hybrid contribution -1.330 2.049 2.144 3.251 sum -0.308 -24.069 6.652 24.974 Atomic orbital electron populations 1.22517 0.87198 1.02525 1.00982 1.62000 1.08022 1.12767 1.42746 1.22276 1.01068 0.88591 0.96657 1.21194 0.99293 0.81976 0.97485 1.45914 1.59032 1.13679 1.20314 1.20866 0.78973 0.87356 0.81507 1.90635 1.40790 1.75753 1.34175 1.21470 1.00530 0.90338 0.91685 0.88590 1.58742 1.29898 1.32811 1.14818 1.22378 0.98253 0.98369 0.98692 1.19100 0.96184 0.88732 0.97259 1.21143 1.05670 0.95391 1.34056 0.92805 1.25017 0.95274 0.98149 0.95900 1.69942 1.22409 1.15343 1.45487 0.86639 0.81001 0.79679 0.80582 1.20248 1.21205 1.20224 1.22621 0.95243 0.93865 0.91299 1.22625 0.94216 0.97580 1.01078 1.22320 0.98127 0.95996 0.99825 1.22085 0.95027 0.97904 1.00997 1.22208 0.97812 0.93553 1.02069 0.95517 0.90772 0.91011 0.94056 0.89855 0.90821 0.91751 0.76575 0.84144 0.83077 0.92703 0.92609 0.96331 0.96368 0.92816 0.93522 0.91669 0.90180 0.91750 0.91469 0.91664 0.91986 0.90494 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.05 60.06 0.54 0.68 16 2 N -0.53 -4.74 4.59 -232.66 -1.07 -5.81 16 3 C 0.04 0.39 4.96 -3.83 -0.02 0.37 16 4 C 0.12 1.46 5.60 -4.05 -0.02 1.44 16 5 N -0.74 -9.56 5.56 -60.29 -0.33 -9.89 16 6 C 0.53 8.85 7.08 -10.99 -0.08 8.77 16 7 O -0.54 -10.77 16.25 5.56 0.09 -10.68 16 8 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 9 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 10 N -0.83 -14.55 8.94 -5.65 -0.05 -14.60 16 11 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 12 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.08 0.61 2.59 -65.86 -0.17 0.44 16 22 C -0.12 -0.85 5.50 -24.55 -0.13 -0.98 16 23 C -0.12 -0.77 6.82 -25.07 -0.17 -0.94 16 24 C -0.12 -0.74 6.80 -25.62 -0.17 -0.92 16 25 C -0.12 -0.81 5.24 -25.62 -0.13 -0.95 16 26 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.07 0.67 6.30 -51.93 -0.33 0.34 16 28 H 0.07 0.53 6.67 -51.92 -0.35 0.18 16 29 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.08 0.71 6.77 -51.93 -0.35 0.36 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 33 H 0.40 4.32 8.47 -40.82 -0.35 3.97 16 34 H 0.35 6.14 8.58 -39.29 -0.34 5.81 16 35 H 0.35 6.18 7.55 -39.30 -0.30 5.88 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.46 7.74 -51.93 -0.40 0.05 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.57 7.40 -51.93 -0.38 0.19 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -31.19 383.27 -10.07 -41.26 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.94 Total: 9.52 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.25 Total: -6.55 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.72 Total: -55.57 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.19 -10.07 -41.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.262 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds