Wall clock time and date at job start Tue Mar 31 2020 03:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46899 * 111.00211 * 2 1 4 4 C 1.52997 * 109.47163 * 293.95572 * 3 2 1 5 5 N 1.46496 * 109.47353 * 179.97438 * 4 3 2 6 6 C 1.34779 * 120.00148 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00015 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.47040 * 40.00411 * 8 6 5 10 10 N 1.46907 * 109.46992 * 160.00200 * 8 6 5 11 11 C 1.52999 * 109.47277 * 280.00132 * 8 6 5 12 12 C 1.52999 * 109.47080 * 174.99792 * 11 8 6 13 13 C 1.50704 * 109.47071 * 180.02562 * 12 11 8 14 14 H 1.07992 * 120.00146 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99822 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00112 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99805 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47288 * 60.00271 * 17 15 13 19 19 H 1.48504 * 109.47034 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46919 * 299.99840 * 17 15 13 21 21 C 1.46904 * 111.00110 * 123.95738 * 2 1 3 22 22 C 1.55238 * 110.46809 * 170.85473 * 21 2 1 23 23 C 1.54894 * 102.58338 * 203.38989 * 22 21 2 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 1.09004 * 109.47407 * 296.04535 * 1 2 3 27 27 H 1.08995 * 109.47353 * 56.04663 * 1 2 3 28 28 H 1.09007 * 109.47186 * 176.04859 * 1 2 3 29 29 H 1.08998 * 109.47176 * 53.95358 * 3 2 1 30 30 H 1.08996 * 109.47396 * 173.95524 * 3 2 1 31 31 H 1.09007 * 109.47148 * 300.00081 * 4 3 2 32 32 H 1.09007 * 109.47462 * 59.99519 * 4 3 2 33 33 H 0.97004 * 120.00109 * 359.97438 * 5 4 3 34 34 H 1.00903 * 110.99632 * 60.00103 * 10 8 6 35 35 H 1.00894 * 110.99681 * 183.95344 * 10 8 6 36 36 H 1.08998 * 109.47163 * 295.00257 * 11 8 6 37 37 H 1.09003 * 109.46721 * 55.00353 * 11 8 6 38 38 H 1.08998 * 109.47502 * 300.00258 * 12 11 8 39 39 H 1.09002 * 109.46917 * 60.00108 * 12 11 8 40 40 H 0.97002 * 119.99900 * 179.97438 * 16 15 13 41 41 H 1.09007 * 110.42882 * 293.50494 * 21 2 1 42 42 H 1.08996 * 110.89448 * 85.10553 * 22 21 2 43 43 H 1.08993 * 110.76342 * 321.62219 * 22 21 2 44 44 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 45 45 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 46 46 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 47 47 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 48 48 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 49 49 H 1.09003 * 110.03070 * 240.71854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 7 2.1559 3.4253 -1.3180 6 6 1.9554 4.2241 -2.3849 7 8 1.3403 3.8107 -3.3448 8 6 2.4944 5.6314 -2.3844 9 1 3.4863 5.6404 -1.9323 10 7 2.5816 6.1229 -3.7660 11 6 1.5589 6.5357 -1.5794 12 6 2.1685 7.9350 -1.4736 13 6 1.2472 8.8255 -0.6802 14 1 0.3200 8.4326 -0.2901 15 6 1.5882 10.1419 -0.4523 16 7 2.7177 10.6202 -0.9269 17 14 0.4467 11.2455 0.5317 18 1 0.2648 10.6812 1.8932 19 1 1.0377 12.6040 0.6333 20 1 -0.8701 11.3288 -0.1498 21 6 1.9954 -0.7661 1.1376 22 6 3.5305 -0.9534 1.0020 23 6 3.7938 -2.2145 1.8619 24 6 2.5788 -3.1243 1.5867 25 6 1.4354 -2.2034 1.1261 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3634 -1.0253 -0.0708 29 1 1.5611 1.9273 0.8309 30 1 3.0797 1.3444 0.1082 31 1 2.0658 1.5015 -2.1492 32 1 0.5471 2.0845 -1.4265 33 1 2.6476 3.7561 -0.5500 34 1 1.6741 6.1242 -4.2072 35 1 3.0003 7.0402 -3.7977 36 1 0.5929 6.5971 -2.0806 37 1 1.4242 6.1215 -0.5802 38 1 3.1345 7.8736 -0.9724 39 1 2.3032 8.3491 -2.4728 40 1 2.9574 11.5464 -0.7669 41 1 1.7514 -0.2690 2.0765 42 1 4.0643 -0.0928 1.4049 43 1 3.8079 -1.1296 -0.0372 44 1 3.8423 -1.9523 2.9188 45 1 4.7158 -2.7042 1.5486 46 1 2.8196 -3.8416 0.8020 47 1 2.2921 -3.6500 2.4974 48 1 1.1212 -2.4736 0.1179 49 1 0.5932 -2.2814 1.8136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424157607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:09 Heat of formation + Delta-G solvation = -81.895638 kcal Electronic energy + Delta-G solvation = -24013.836719 eV Core-core repulsion = 20587.487813 eV Total energy + Delta-G solvation = -3426.348906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97684 -39.96323 -37.35151 -36.83662 -35.27049 -34.83146 -31.68349 -30.81947 -29.77905 -28.54471 -27.98121 -26.29789 -25.07821 -22.76844 -22.33759 -21.38615 -20.98505 -20.53939 -18.87971 -18.09979 -17.66623 -17.02719 -16.62832 -16.55889 -16.29421 -15.99362 -15.67636 -15.39823 -15.22614 -14.87874 -14.58190 -14.43627 -14.25790 -14.00183 -13.93482 -13.45718 -13.05717 -12.99105 -12.93043 -12.69799 -12.57061 -12.51596 -12.24700 -11.86381 -11.82641 -11.78155 -11.70957 -11.69034 -11.65555 -11.31815 -11.27915 -10.76228 -10.55698 -10.11032 -9.64113 -9.36169 -8.21410 -6.31780 1.39611 1.41163 1.49118 1.61348 2.01980 2.39759 3.00326 3.12072 3.59862 3.73836 3.75975 3.79979 3.93315 4.00507 4.09499 4.14227 4.25652 4.34246 4.45495 4.46966 4.55812 4.61474 4.64283 4.66636 4.72994 4.81755 4.82980 4.90556 4.92079 5.00185 5.04700 5.09010 5.10429 5.24611 5.27052 5.32551 5.40977 5.46530 5.50679 5.66008 5.80739 6.01858 6.07468 6.13548 6.21246 6.48019 6.52863 6.83546 7.23064 7.37135 8.89069 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.019131 B = 0.002421 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.264818 B =11560.329070 C =12187.706032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.052 3.948 4 C 0.129 3.871 5 N -0.718 5.718 6 C 0.527 3.473 7 O -0.573 6.573 8 C 0.081 3.919 9 H 0.111 0.889 10 N -0.831 5.831 11 C -0.120 4.120 12 C 0.030 3.970 13 C -0.545 4.545 14 H 0.054 0.946 15 C 0.005 3.995 16 N -0.926 5.926 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.077 3.923 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.116 4.116 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.414 0.586 34 H 0.343 0.657 35 H 0.353 0.647 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.003 0.997 39 H 0.002 0.998 40 H 0.264 0.736 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 -26.048 7.331 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.005 3.995 5 N -0.372 5.372 6 C 0.314 3.686 7 O -0.452 6.452 8 C -0.034 4.034 9 H 0.129 0.871 10 N -0.362 5.362 11 C -0.160 4.160 12 C -0.007 4.007 13 C -0.583 4.583 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.566 5.566 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.031 4.031 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.159 4.159 25 C -0.154 4.154 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.800 -27.077 6.081 27.763 hybrid contribution -1.239 2.299 1.660 3.094 sum -0.439 -24.778 7.740 25.963 Atomic orbital electron populations 1.22513 0.86985 1.03029 1.00607 1.61999 1.08329 1.12526 1.43568 1.22163 1.01681 0.88743 0.95054 1.21202 0.98563 0.81081 0.98628 1.45779 1.57983 1.13803 1.19594 1.20722 0.78637 0.87396 0.81879 1.90624 1.42448 1.76376 1.35705 1.21414 1.00616 0.90247 0.91102 0.87085 1.58759 1.29738 1.32705 1.15008 1.22131 0.97795 0.96405 0.99696 1.18969 0.95229 0.90892 0.95642 1.21590 1.06155 0.96274 1.34320 0.92739 1.25873 0.96780 0.99754 0.96983 1.70056 1.24050 1.15764 1.46728 0.85596 0.78954 0.77708 0.79365 1.19201 1.20834 1.19686 1.22676 0.95629 0.94138 0.90680 1.22613 0.93834 0.98301 1.00721 1.22321 0.98408 0.95468 0.99877 1.22091 0.94636 0.97774 1.01428 1.22192 0.98312 0.93084 1.01843 0.95350 0.91712 0.90048 0.93607 0.88883 0.91998 0.92632 0.74986 0.84366 0.83215 0.93819 0.91481 0.97849 0.97945 0.92725 0.93634 0.91398 0.91186 0.91259 0.90964 0.91580 0.91118 0.91215 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.05 127.69 1.16 1.42 16 2 N -0.54 -8.98 4.59 -890.02 -4.09 -13.07 16 3 C 0.05 0.88 4.96 86.30 0.43 1.31 16 4 C 0.13 2.91 5.60 86.38 0.48 3.40 16 5 N -0.72 -17.66 5.56 -463.06 -2.57 -20.23 16 6 C 0.53 17.26 7.08 87.66 0.62 17.88 16 7 O -0.57 -22.79 16.25 -3.02 -0.05 -22.84 16 8 C 0.08 2.73 3.21 44.17 0.14 2.87 16 9 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 10 N -0.83 -28.96 8.94 -171.79 -1.54 -30.49 16 11 C -0.12 -4.66 4.78 30.59 0.15 -4.51 16 12 C 0.03 1.45 4.74 29.85 0.14 1.60 16 13 C -0.55 -29.81 9.11 25.60 0.23 -29.58 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 15 C 0.00 0.26 5.46 84.65 0.46 0.72 16 16 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 17 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C 0.08 1.08 2.59 46.11 0.12 1.20 16 22 C -0.12 -1.52 5.50 32.01 0.18 -1.34 16 23 C -0.12 -1.30 6.82 31.67 0.22 -1.08 16 24 C -0.12 -1.26 6.80 31.32 0.21 -1.05 16 25 C -0.12 -1.42 5.24 31.32 0.16 -1.26 16 26 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.06 1.14 6.30 -2.39 -0.02 1.12 16 28 H 0.08 1.10 6.67 -2.38 -0.02 1.09 16 29 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.09 1.41 6.77 -2.39 -0.02 1.39 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 1.38 6.47 -2.38 -0.02 1.37 16 33 H 0.41 8.05 8.47 -92.71 -0.79 7.26 16 34 H 0.34 12.27 8.58 -89.69 -0.77 11.50 16 35 H 0.35 12.39 7.55 -89.70 -0.68 11.71 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 40 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 41 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.07 0.83 7.74 -2.39 -0.02 0.82 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.96 7.40 -2.39 -0.02 0.94 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -65.64 383.27 -2.52 -68.16 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -1.29 Total: 35.55 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.70 Total: -8.44 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -7.91 Total: -117.66 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -65.64 -2.52 -68.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.732 kcal (2) G-P(sol) polarization free energy of solvation -65.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds