Wall clock time and date at job start Tue Mar 31 2020 03:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00382 * 2 1 4 4 C 1.34777 * 119.99873 * 180.02562 * 2 1 3 5 5 O 1.21287 * 119.99939 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00159 * 179.97438 * 4 2 1 7 7 C 1.52994 * 109.47194 * 179.97438 * 6 4 2 8 8 N 1.46498 * 109.47336 * 179.97438 * 7 6 4 9 9 C 1.34773 * 120.00160 * 180.02562 * 8 7 6 10 10 O 1.21580 * 120.00337 * 355.01645 * 9 8 7 11 11 N 1.34779 * 119.99851 * 175.01553 * 9 8 7 12 12 C 1.46926 * 120.63064 * 184.94691 * 11 9 8 13 13 C 1.52766 * 109.00924 * 233.58805 * 12 11 9 14 14 C 1.53042 * 109.38185 * 305.58684 * 13 12 11 15 15 C 1.50697 * 109.45140 * 181.25303 * 14 13 12 16 16 H 1.08000 * 120.00173 * 239.93869 * 15 14 13 17 17 C 1.37879 * 119.99944 * 59.93690 * 15 14 13 18 18 N 1.31516 * 119.99666 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00114 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47264 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47121 * 120.00262 * 19 17 15 22 22 H 1.48500 * 109.47162 * 239.99933 * 19 17 15 23 23 C 1.53042 * 109.53734 * 61.23777 * 14 13 12 24 24 C 1.46929 * 120.62968 * 5.23084 * 11 9 8 25 25 H 1.08999 * 109.46937 * 269.99983 * 1 2 3 26 26 H 1.09004 * 109.47414 * 29.99164 * 1 2 3 27 27 H 1.08996 * 109.47732 * 149.99466 * 1 2 3 28 28 H 1.08997 * 109.47465 * 240.00712 * 3 2 1 29 29 H 1.09011 * 109.46944 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47265 * 119.99708 * 3 2 1 31 31 H 1.09001 * 109.47070 * 59.99186 * 6 4 2 32 32 H 1.09006 * 109.46872 * 299.99615 * 6 4 2 33 33 H 1.08998 * 109.47665 * 299.99932 * 7 6 4 34 34 H 1.09006 * 109.46917 * 59.99706 * 7 6 4 35 35 H 0.97006 * 119.99978 * 359.97438 * 8 7 6 36 36 H 1.09004 * 109.58668 * 353.41664 * 12 11 9 37 37 H 1.08993 * 109.58849 * 113.84537 * 12 11 9 38 38 H 1.09001 * 109.56685 * 185.55414 * 13 12 11 39 39 H 1.08997 * 109.38890 * 65.51489 * 13 12 11 40 40 H 1.09005 * 109.45996 * 301.22266 * 14 13 12 41 41 H 0.97009 * 119.99985 * 179.97438 * 18 17 15 42 42 H 1.09006 * 109.49873 * 178.68437 * 23 14 13 43 43 H 1.09006 * 109.52258 * 58.60579 * 23 14 13 44 44 H 1.09003 * 109.58420 * 246.14781 * 24 11 9 45 45 H 1.08986 * 109.58860 * 6.43391 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5324 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 6 4.1558 -2.6098 -0.0010 8 7 5.6207 -2.6099 -0.0022 9 6 6.2945 -3.7771 -0.0028 10 8 5.6902 -4.8280 0.0891 11 7 7.6384 -3.7793 -0.1053 12 6 8.3786 -5.0436 -0.2162 13 6 9.4553 -5.0865 0.8667 14 6 10.3297 -3.8347 0.7635 15 6 11.4112 -3.8902 1.8113 16 1 11.4778 -3.1150 2.5603 17 6 12.3158 -4.9308 1.8139 18 7 12.2350 -5.8746 0.9016 19 14 13.6561 -5.0001 3.1133 20 1 13.5302 -3.8287 4.0172 21 1 13.5168 -6.2506 3.9020 22 1 14.9865 -4.9764 2.4539 23 6 9.4685 -2.5892 0.9851 24 6 8.3915 -2.5177 -0.1020 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 2.8241 1.3265 -0.8900 29 1 1.4892 2.0972 0.0005 30 1 2.8242 1.3264 0.8900 31 1 4.0095 -0.6535 0.8888 32 1 4.0088 -0.6533 -0.8912 33 1 3.7928 -3.1234 0.8892 34 1 3.7920 -3.1238 -0.8907 35 1 6.1058 -1.7698 -0.0032 36 1 7.6938 -5.8810 -0.0819 37 1 8.8486 -5.1070 -1.1976 38 1 10.0734 -5.9741 0.7319 39 1 8.9809 -5.1191 1.8475 40 1 10.7847 -3.7902 -0.2261 41 1 12.8717 -6.6065 0.9031 42 1 10.0960 -1.6993 0.9346 43 1 8.9935 -2.6443 1.9647 44 1 8.8627 -2.3709 -1.0739 45 1 7.7149 -1.6888 0.1049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543778921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:53 Heat of formation + Delta-G solvation = -63.507507 kcal Electronic energy + Delta-G solvation = -24200.240314 eV Core-core repulsion = 20638.855682 eV Total energy + Delta-G solvation = -3561.384632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.32175 -39.76419 -37.00117 -35.95784 -35.03057 -33.51567 -31.56589 -30.84169 -29.88054 -28.34445 -26.70943 -25.97689 -23.62340 -22.86405 -21.98583 -20.31833 -19.66021 -18.76046 -17.64681 -17.36083 -16.60752 -16.36871 -16.17013 -15.61863 -15.33721 -14.57807 -14.41693 -14.09969 -13.75881 -13.41613 -13.29129 -13.18194 -13.13666 -13.00611 -12.73865 -12.63415 -12.49009 -12.22695 -11.97301 -11.72719 -11.58731 -11.10050 -10.94048 -10.61793 -10.41291 -10.21015 -10.03969 -9.71900 -9.54142 -9.16766 -9.12717 -8.93958 -8.86021 -8.35408 -7.85930 -6.00501 -4.07196 2.28468 2.50217 3.09276 3.28592 3.37193 3.40134 3.61385 4.08171 4.37881 4.42257 4.55899 4.59580 4.70529 4.86791 4.93893 5.06820 5.17690 5.23184 5.29300 5.37116 5.42630 5.75706 5.78649 5.81310 5.93771 6.01671 6.09706 6.30175 6.44675 6.52897 6.62889 6.66307 6.83100 6.88577 7.00265 7.17067 7.27490 7.51967 7.73211 7.80039 7.95252 8.08496 8.34301 8.41983 8.96268 8.99581 9.57836 11.04877 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033867 B = 0.002585 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.557230 B =10828.586822 C =11279.712206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.626 5.626 3 C 0.078 3.922 4 C 0.518 3.482 5 O -0.530 6.530 6 C -0.151 4.151 7 C 0.155 3.845 8 N -0.755 5.755 9 C 0.705 3.295 10 O -0.596 6.596 11 N -0.619 5.619 12 C 0.127 3.873 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.124 4.124 24 C 0.114 3.886 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.393 0.607 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 16.706 -3.977 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.362 5.362 3 C -0.065 4.065 4 C 0.306 3.694 5 O -0.406 6.406 6 C -0.191 4.191 7 C 0.030 3.970 8 N -0.415 5.415 9 C 0.407 3.593 10 O -0.475 6.475 11 N -0.355 5.355 12 C 0.005 3.995 13 C -0.163 4.163 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.162 4.162 24 C -0.009 4.009 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.229 0.771 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.460 15.189 -3.986 24.236 hybrid contribution 1.052 0.634 0.761 1.445 sum -17.408 15.823 -3.225 23.745 Atomic orbital electron populations 1.21678 0.79026 1.03184 1.01943 1.47772 1.07234 1.06475 1.74671 1.21838 0.97436 0.85093 1.02139 1.20455 0.89923 0.83184 0.75869 1.90759 1.70336 1.30817 1.48711 1.21836 0.92420 0.99819 1.05028 1.20759 0.78678 0.93855 1.03738 1.45232 1.06518 1.07708 1.82004 1.15820 0.81867 0.83705 0.77957 1.90885 1.67777 1.30571 1.58262 1.47455 1.03424 1.08661 1.75989 1.21678 0.94059 0.83811 0.99993 1.21950 0.95067 1.04080 0.95185 1.18629 0.91991 0.88899 0.97429 1.21217 1.12094 1.08313 1.13452 0.92728 1.24972 0.97616 0.95692 0.95760 1.69860 1.36641 1.12167 1.34166 0.86566 0.81862 0.77931 0.81794 1.19897 1.21057 1.21084 1.22013 0.96275 1.01234 0.96684 1.21697 0.94279 0.84538 1.00421 0.92704 0.91227 0.90421 0.91772 0.90322 0.91737 0.88107 0.88165 0.90905 0.91070 0.77066 0.90518 0.92578 0.87836 0.94366 0.95478 0.93004 0.92191 0.92914 0.91955 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.41 59.84 0.62 1.15 16 2 N -0.63 -4.58 3.27 -189.52 -0.62 -5.20 16 3 C 0.08 0.28 9.74 59.85 0.58 0.86 16 4 C 0.52 5.35 7.67 -10.99 -0.08 5.26 16 5 O -0.53 -7.82 15.56 5.55 0.09 -7.74 16 6 C -0.15 -1.23 4.63 -27.89 -0.13 -1.36 16 7 C 0.15 1.98 4.97 -4.05 -0.02 1.96 16 8 N -0.76 -10.31 5.46 -65.23 -0.36 -10.67 16 9 C 0.71 13.15 8.30 -86.92 -0.72 12.43 16 10 O -0.60 -13.52 15.77 5.29 0.08 -13.44 16 11 N -0.62 -11.42 2.98 -178.77 -0.53 -11.95 16 12 C 0.13 2.61 6.41 -3.93 -0.03 2.59 16 13 C -0.12 -2.92 5.14 -26.83 -0.14 -3.06 16 14 C 0.05 1.16 2.07 -91.73 -0.19 0.97 16 15 C -0.51 -13.63 8.56 -34.44 -0.29 -13.92 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.84 11.31 55.43 0.63 -24.22 16 19 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 24 C 0.11 1.79 6.39 -3.71 -0.02 1.76 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.26 7.92 -51.93 -0.41 -0.16 16 27 H 0.08 0.62 7.42 -51.93 -0.39 0.24 16 28 H 0.06 0.17 7.85 -51.93 -0.41 -0.24 16 29 H 0.08 0.15 7.80 -51.92 -0.40 -0.25 16 30 H 0.06 0.19 7.85 -51.93 -0.41 -0.22 16 31 H 0.10 0.63 7.87 -51.93 -0.41 0.22 16 32 H 0.10 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.39 4.15 5.96 -40.82 -0.24 3.91 16 36 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 2.71 6.03 -51.93 -0.31 2.39 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.70 5.64 -51.94 -0.29 0.40 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -34.51 358.54 -8.37 -42.88 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.39 Total: 1.26 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.66 Total: 7.70 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.88 Total: -52.04 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.17 Total: -21.17 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.51 -8.37 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543778921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.625 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds