Wall clock time and date at job start Tue Mar 31 2020 03:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47016 * 111.00148 * 2 1 4 4 C 1.53097 * 109.26027 * 177.60694 * 3 2 1 5 5 O 1.43013 * 109.25760 * 56.84810 * 4 3 2 6 6 C 1.43016 * 113.74103 * 301.33072 * 5 4 3 7 7 C 1.47014 * 111.00072 * 236.36405 * 2 1 3 8 8 H 1.09003 * 109.50701 * 62.46123 * 7 2 1 9 9 C 1.50701 * 109.50600 * 302.32549 * 7 2 1 10 10 O 1.21276 * 120.00133 * 331.95653 * 9 7 2 11 11 N 1.34777 * 119.99706 * 151.95580 * 9 7 2 12 12 C 1.46505 * 120.00079 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47110 * 180.02562 * 12 11 9 14 14 H 1.08990 * 112.85232 * 43.80433 * 13 12 11 15 15 C 1.53778 * 113.61068 * 175.00254 * 13 12 11 16 16 C 1.53788 * 87.08172 * 139.98003 * 15 13 12 17 17 H 1.09003 * 113.61534 * 220.02050 * 16 15 13 18 18 N 1.46494 * 113.61485 * 89.19656 * 16 15 13 19 19 C 1.36938 * 120.00133 * 155.00121 * 18 16 15 20 20 H 1.08003 * 119.99948 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00398 * 180.02562 * 19 18 16 22 22 N 1.31620 * 120.00055 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99659 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46917 * 90.00567 * 23 21 19 25 25 H 1.48503 * 109.46857 * 210.00119 * 23 21 19 26 26 H 1.48495 * 109.47276 * 330.00247 * 23 21 19 27 27 C 1.53786 * 113.60976 * 272.49702 * 13 12 11 28 28 H 1.08993 * 109.47076 * 65.96465 * 1 2 3 29 29 H 1.08996 * 109.47357 * 305.96055 * 1 2 3 30 30 H 1.09000 * 109.47032 * 185.96007 * 1 2 3 31 31 H 1.09001 * 109.50324 * 297.54676 * 3 2 1 32 32 H 1.08999 * 109.50604 * 57.62762 * 3 2 1 33 33 H 1.09003 * 109.50447 * 176.78079 * 4 3 2 34 34 H 1.08997 * 109.50687 * 296.87308 * 4 3 2 35 35 H 1.09003 * 109.50921 * 178.60713 * 6 5 4 36 36 H 1.09007 * 109.50629 * 298.73584 * 6 5 4 37 37 H 0.97005 * 120.00449 * 0.02562 * 11 9 7 38 38 H 1.08998 * 109.47039 * 300.00451 * 12 11 9 39 39 H 1.09004 * 109.46581 * 60.00020 * 12 11 9 40 40 H 1.09004 * 113.61522 * 254.52392 * 15 13 12 41 41 H 1.09001 * 113.61693 * 25.34855 * 15 13 12 42 42 H 0.96999 * 119.99969 * 335.00580 * 18 16 15 43 43 H 0.96999 * 119.99767 * 179.97438 * 22 21 19 44 44 H 1.08991 * 113.61755 * 334.57061 * 27 13 12 45 45 H 1.09002 * 113.60833 * 105.47591 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 0.0603 5 8 4.0175 0.5574 -1.0402 6 6 3.5250 -0.7849 -1.0709 7 6 1.9958 -0.7602 -1.1427 8 1 1.6828 -0.2842 -2.0720 9 6 1.4670 -2.1706 -1.0956 10 8 1.1761 -2.6739 -0.0312 11 7 1.3174 -2.8726 -2.2363 12 6 0.8038 -4.2440 -2.1905 13 6 0.7327 -4.8096 -3.6103 14 1 1.6196 -4.5821 -4.2015 15 6 0.3198 -6.2899 -3.6636 16 6 -0.5299 -5.9273 -4.8930 17 1 -1.4986 -6.4267 -4.9170 18 7 0.1966 -6.0338 -6.1607 19 6 -0.4884 -6.2512 -7.3263 20 1 -1.5644 -6.3438 -7.3111 21 6 0.2000 -6.3526 -8.5274 22 7 -0.4585 -6.5610 -9.6478 23 14 2.0609 -6.1917 -8.5537 24 1 2.6761 -7.5313 -8.3742 25 1 2.4899 -5.6204 -9.8556 26 1 2.4959 -5.2955 -7.4525 27 6 -0.5884 -4.4964 -4.3326 28 1 -0.3633 0.4185 -0.9385 29 1 -0.3634 0.6034 0.8318 30 1 -0.3633 -1.0221 0.1067 31 1 1.6827 1.8825 -0.9110 32 1 1.6127 1.9094 0.8678 33 1 3.9221 2.3399 0.0029 34 1 3.8385 0.8651 0.9967 35 1 3.9222 -1.2985 -1.9465 36 1 3.8385 -1.3084 -0.1677 37 1 1.5504 -2.4702 -3.0876 38 1 1.4692 -4.8611 -1.5868 39 1 -0.1926 -4.2442 -1.7485 40 1 1.1453 -6.9657 -3.8874 41 1 -0.2684 -6.6104 -2.8038 42 1 1.1629 -5.9503 -6.1743 43 1 0.0226 -6.6315 -10.4872 44 1 -1.4261 -4.3263 -3.6563 45 1 -0.4960 -3.7243 -5.0963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086342201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:45 Heat of formation + Delta-G solvation = -33.221513 kcal Electronic energy + Delta-G solvation = -24385.566695 eV Core-core repulsion = 20825.495362 eV Total energy + Delta-G solvation = -3560.071333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77238 -39.27197 -38.46312 -35.98507 -34.77759 -33.31423 -31.96489 -30.68539 -29.28080 -27.65924 -25.24561 -25.01022 -24.57645 -23.45879 -21.95273 -21.39959 -20.28142 -18.68935 -17.74398 -17.51604 -16.90269 -16.73296 -16.17093 -15.59062 -15.27806 -15.01189 -14.89846 -14.67488 -14.39058 -14.17657 -13.70213 -13.60791 -13.23386 -12.92703 -12.71072 -12.62919 -12.45693 -12.10617 -12.05931 -11.68805 -11.57373 -11.41320 -11.12137 -10.95303 -10.56236 -10.39360 -10.25210 -10.14784 -9.81814 -9.69167 -9.55934 -9.15106 -8.95995 -8.80051 -7.35448 -5.84193 -3.20717 2.36362 2.81807 3.30546 3.31286 3.33854 3.39888 3.57547 4.37073 4.42818 4.50676 4.51666 4.60974 4.76573 4.79547 4.87061 4.88591 5.03622 5.12564 5.13300 5.16944 5.26283 5.34506 5.35670 5.37495 5.44715 5.49445 5.66966 5.70440 5.79550 5.85351 6.06798 6.17957 6.24774 6.38039 6.43599 6.49304 6.56361 6.64506 6.68131 6.83686 7.34456 7.93470 8.04974 8.35466 9.13039 9.85194 10.04242 11.33889 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.002958 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.153100 B = 9464.604571 C =10084.293590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.018 3.982 4 C 0.060 3.940 5 O -0.378 6.378 6 C 0.077 3.923 7 C 0.030 3.970 8 H 0.070 0.930 9 C 0.517 3.483 10 O -0.521 6.521 11 N -0.724 5.724 12 C 0.132 3.868 13 C -0.124 4.124 14 H 0.090 0.910 15 C -0.148 4.148 16 C 0.173 3.827 17 H 0.071 0.929 18 N -0.730 5.730 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.278 1.278 27 C -0.167 4.167 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 15.056 20.396 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.110 4.110 4 C -0.017 4.017 5 O -0.296 6.296 6 C -0.001 4.001 7 C -0.082 4.082 8 H 0.088 0.912 9 C 0.301 3.699 10 O -0.396 6.396 11 N -0.376 5.376 12 C 0.009 3.991 13 C -0.143 4.143 14 H 0.108 0.892 15 C -0.188 4.188 16 C 0.061 3.939 17 H 0.089 0.911 18 N -0.370 5.370 19 C -0.377 4.377 20 H 0.110 0.890 21 C -0.190 4.190 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.208 4.208 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.087 0.913 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.195 0.805 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.982 14.458 21.249 26.388 hybrid contribution 0.905 0.720 -1.157 1.635 sum 6.887 15.177 20.093 26.105 Atomic orbital electron populations 1.22507 0.86048 1.03830 1.00484 1.61978 1.08961 1.12865 1.40628 1.22872 0.96573 0.89397 1.02205 1.22738 0.92149 0.96625 0.90202 1.88030 1.69472 1.23500 1.48598 1.22550 0.89395 0.84529 1.03628 1.22353 0.98042 0.93319 0.94510 0.91195 1.20123 0.78490 0.87022 0.84227 1.90709 1.49069 1.70484 1.29325 1.46142 1.66434 1.15989 1.09057 1.21488 0.99207 0.80859 0.97562 1.22761 0.99647 0.97825 0.94025 0.89175 1.23464 1.00910 0.94405 1.00023 1.20996 0.95111 0.93078 0.84710 0.91054 1.42513 1.04899 1.86706 1.02866 1.19109 0.93312 1.41749 0.83578 0.89030 1.24688 0.97362 1.01672 0.95313 1.69698 1.34504 1.55860 0.97810 0.86557 0.87171 0.77921 0.76864 1.20976 1.21642 1.20423 1.23864 0.95241 1.02122 0.99556 0.95501 0.90830 0.90004 0.93652 0.88997 0.88047 0.91865 0.87712 0.91288 0.76391 0.91650 0.91359 0.91386 0.89966 0.80519 0.92946 0.90965 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.15 60.06 0.55 0.73 16 2 N -0.52 -5.23 4.53 -235.98 -1.07 -6.30 16 3 C 0.02 0.13 5.66 -3.71 -0.02 0.11 16 4 C 0.06 0.45 7.01 37.21 0.26 0.71 16 5 O -0.38 -3.71 10.83 -35.23 -0.38 -4.09 16 6 C 0.08 0.72 6.27 37.21 0.23 0.95 16 7 C 0.03 0.30 2.38 -68.75 -0.16 0.14 16 8 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 9 C 0.52 6.20 6.02 -10.99 -0.07 6.13 16 10 O -0.52 -8.07 15.37 5.56 0.09 -7.99 16 11 N -0.72 -7.83 5.56 -60.29 -0.33 -8.17 16 12 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 13 C -0.12 -1.63 3.63 -89.81 -0.33 -1.96 16 14 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.15 -2.12 7.39 -25.92 -0.19 -2.31 16 16 C 0.17 3.12 4.56 -67.11 -0.31 2.81 16 17 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 18 N -0.73 -16.50 5.12 -52.63 -0.27 -16.77 16 19 C -0.25 -6.80 10.45 -15.06 -0.16 -6.95 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 23 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 27 C -0.17 -2.53 7.43 -25.91 -0.19 -2.72 16 28 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.59 8.11 -51.93 -0.42 0.16 16 30 H 0.08 0.95 6.29 -51.93 -0.33 0.63 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.36 8.01 5.76 -40.82 -0.24 7.77 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -32.90 359.43 -8.64 -41.54 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.65 Total: 8.31 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.50 Total: -0.75 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.90 Total: -59.22 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.30 Total: -12.08 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.90 -8.64 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086342201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.317 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds