Wall clock time and date at job start Tue Mar 31 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99728 * 164.99627 * 10 9 7 12 12 O 1.42099 * 106.40230 * 178.53991 * 11 10 9 13 13 O 1.42097 * 106.40790 * 311.45947 * 11 10 9 14 14 C 1.76200 * 107.21938 * 65.00313 * 11 10 9 15 15 C 1.38656 * 119.77090 * 89.99675 * 14 11 10 16 16 C 1.37753 * 120.39530 * 180.02562 * 15 14 11 17 17 C 1.39546 * 119.73571 * 359.97438 * 16 15 14 18 18 N 1.36150 * 133.70842 * 179.97438 * 17 16 15 19 19 C 1.30618 * 108.71460 * 180.02562 * 18 17 16 20 20 O 1.35183 * 124.93099 * 180.02562 * 19 18 17 21 21 O 1.34379 * 110.13827 * 359.97438 * 19 18 17 22 22 C 1.35266 * 108.19117 * 0.02562 * 21 19 18 23 23 C 1.37999 * 119.76781 * 269.72774 * 14 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 0.96998 * 120.00106 * 344.99857 * 10 9 7 28 28 H 1.08000 * 119.80317 * 0.02562 * 15 14 11 29 29 H 1.08001 * 120.13337 * 180.02562 * 16 15 14 30 30 H 0.96702 * 114.00381 * 359.97438 * 20 19 18 31 31 H 1.08004 * 120.05517 * 0.02562 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 16 1.6878 -5.1423 0.3687 12 8 2.8234 -5.9881 0.2493 13 8 0.9239 -5.0308 1.5617 14 6 0.5652 -5.6352 -0.8967 15 6 1.0412 -6.2887 -2.0232 16 6 0.1751 -6.6792 -3.0206 17 6 -1.1894 -6.4154 -2.8949 18 7 -2.2723 -6.6648 -3.6816 19 6 -3.3384 -6.2008 -3.0866 20 8 -4.5945 -6.2740 -3.5809 21 8 -3.0056 -5.6412 -1.9111 22 6 -1.6670 -5.7547 -1.7533 23 6 -0.7825 -5.3730 -0.7573 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 3.1351 -3.4539 -0.2181 28 1 2.0974 -6.4927 -2.1191 29 1 0.5504 -7.1884 -3.8960 30 1 -4.6537 -6.7111 -4.4415 31 1 -1.1467 -4.8670 0.1247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189772550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:49 Heat of formation + Delta-G solvation = -67.566558 kcal Electronic energy + Delta-G solvation = -21406.354885 eV Core-core repulsion = 17782.329165 eV Total energy + Delta-G solvation = -3624.025720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.050 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.52391 -38.85022 -37.87171 -36.82230 -35.44154 -34.83838 -34.67359 -32.20105 -30.91580 -29.68965 -26.79429 -24.27528 -23.49303 -22.58298 -22.25307 -19.73741 -19.18157 -18.35310 -17.74151 -17.49483 -17.38492 -16.36627 -15.98048 -15.42734 -15.00914 -14.61671 -14.36345 -14.14890 -14.07494 -13.54829 -13.09421 -12.84229 -12.61041 -12.18646 -11.95697 -11.87585 -11.68440 -11.56981 -11.45700 -11.07837 -10.98909 -10.76164 -10.64711 -10.16851 -9.46931 -9.02554 -8.96072 -8.69714 -8.29724 -6.21673 -4.26549 0.25193 0.84896 1.00965 1.32546 2.04105 3.22080 3.22709 3.23628 3.30678 3.34129 3.65936 4.14105 4.15675 4.31680 4.40785 4.71806 4.93994 5.02881 5.15369 5.18092 5.42712 5.59049 5.79373 5.91844 5.95409 6.29567 6.36156 6.58911 7.22087 7.27379 7.29292 7.72827 7.76083 8.12031 8.77843 9.38938 10.88722 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.004966 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.640414 B = 5637.463158 C = 6924.528681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.068 0.932 9 C 0.243 3.757 10 N -1.099 6.099 11 S 2.695 3.305 12 O -0.972 6.972 13 O -0.957 6.957 14 C -0.657 4.657 15 C -0.017 4.017 16 C -0.095 4.095 17 C 0.095 3.905 18 N -0.532 5.532 19 C 0.464 3.536 20 O -0.411 6.411 21 O -0.194 6.194 22 C -0.020 4.020 23 C 0.039 3.961 24 H 0.266 0.734 25 H 0.040 0.960 26 H 0.022 0.978 27 H 0.413 0.587 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.442 0.558 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -12.901 -7.614 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.086 0.914 9 C 0.120 3.880 10 N -0.862 5.862 11 S 2.781 3.219 12 O -0.963 6.963 13 O -0.947 6.947 14 C -0.741 4.741 15 C -0.037 4.037 16 C -0.115 4.115 17 C -0.017 4.017 18 N -0.283 5.283 19 C 0.215 3.785 20 O -0.213 6.213 21 O -0.088 6.088 22 C -0.070 4.070 23 C 0.019 3.981 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.247 0.753 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.302 0.698 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.456 -13.295 -6.921 15.637 hybrid contribution -0.083 1.231 -0.847 1.497 sum -4.539 -12.064 -7.768 15.050 Atomic orbital electron populations 1.69947 1.06085 1.27321 1.49466 1.24977 0.94977 0.99523 0.94734 0.86348 0.79963 0.82838 0.77713 1.19531 1.20892 1.20770 1.21217 0.93541 0.89773 1.52379 0.91416 1.19143 0.87846 0.83611 0.97408 1.55447 1.19666 1.23530 1.87583 1.01886 0.73134 0.72951 0.73931 1.93541 1.48985 1.66637 1.87090 1.93582 1.72603 1.86359 1.42131 1.31297 1.08833 1.14685 1.19250 1.20771 1.00646 0.92115 0.90178 1.20277 0.88423 1.02322 1.00493 1.19662 0.94342 0.97288 0.90393 1.71262 0.96850 1.29419 1.30800 1.22357 0.86454 0.88015 0.81640 1.84690 1.16855 1.77646 1.42063 1.84418 1.23765 1.65834 1.34774 1.19989 0.79465 1.07171 1.00357 1.19671 0.89011 0.93367 0.96030 0.92473 0.94171 0.96007 0.75256 0.82756 0.83763 0.69829 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -13.80 9.27 -34.44 -0.32 -14.12 16 8 H 0.07 1.68 7.65 -52.49 -0.40 1.28 16 9 C 0.24 5.78 5.98 -5.19 -0.03 5.75 16 10 N -1.10 -20.95 5.99 -11.66 -0.07 -21.02 16 11 S 2.70 47.04 5.73 -107.50 -0.62 46.43 16 12 O -0.97 -17.34 17.26 -57.18 -0.99 -18.33 16 13 O -0.96 -19.45 16.72 -57.18 -0.96 -20.41 16 14 C -0.66 -10.39 5.95 -39.51 -0.24 -10.62 16 15 C -0.02 -0.23 9.49 -39.60 -0.38 -0.60 16 16 C -0.10 -1.24 10.10 -39.27 -0.40 -1.63 16 17 C 0.10 1.42 7.23 -84.70 -0.61 0.80 16 18 N -0.53 -7.13 11.38 -12.80 -0.15 -7.28 16 19 C 0.46 5.81 9.54 52.25 0.50 6.31 16 20 O -0.41 -3.36 13.62 -40.53 -0.55 -3.92 16 21 O -0.19 -2.98 10.78 -20.51 -0.22 -3.20 16 22 C -0.02 -0.33 7.42 -38.69 -0.29 -0.62 16 23 C 0.04 0.64 9.52 -39.55 -0.38 0.26 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.04 1.03 7.75 -51.93 -0.40 0.63 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.41 7.08 8.54 -34.47 -0.29 6.78 16 28 H 0.15 1.72 7.59 -52.49 -0.40 1.32 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.44 1.01 9.06 45.56 0.41 1.43 16 31 H 0.16 2.53 7.59 -52.48 -0.40 2.14 16 LS Contribution 298.28 15.07 4.49 4.49 Total: -1.00 -34.07 298.28 -7.03 -41.11 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -1.46 Total: 3.90 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -2.23 Total: -12.92 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.52 Total: -52.61 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -2.72 Total: -45.85 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 47.04 SS G_CDS: -0.62 Total: 46.43 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.07 -7.03 -41.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189772550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.460 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds