Wall clock time and date at job start Tue Mar 31 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 S 1.65600 * 119.99728 * 164.99627 * 10 9 7 12 12 O 1.42099 * 106.40230 * 178.53991 * 11 10 9 13 13 O 1.42097 * 106.40790 * 311.45947 * 11 10 9 14 14 C 1.76200 * 107.21938 * 65.00313 * 11 10 9 15 15 C 1.38656 * 119.77090 * 89.99675 * 14 11 10 16 16 C 1.37753 * 120.39530 * 180.02562 * 15 14 11 17 17 C 1.39546 * 119.73571 * 359.97438 * 16 15 14 18 18 N 1.36150 * 133.70842 * 179.97438 * 17 16 15 19 19 C 1.30618 * 108.71460 * 180.02562 * 18 17 16 20 20 O 1.35183 * 124.93099 * 180.02562 * 19 18 17 21 21 O 1.34379 * 110.13827 * 359.97438 * 19 18 17 22 22 C 1.35266 * 108.19117 * 0.02562 * 21 19 18 23 23 C 1.37999 * 119.76781 * 269.72774 * 14 11 10 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 0.96998 * 120.00106 * 344.99857 * 10 9 7 28 28 H 1.08000 * 119.80317 * 0.02562 * 15 14 11 29 29 H 1.08001 * 120.13337 * 180.02562 * 16 15 14 30 30 H 0.96702 * 114.00381 * 359.97438 * 20 19 18 31 31 H 1.08004 * 120.05517 * 0.02562 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 16 1.6878 -5.1423 0.3687 12 8 2.8234 -5.9881 0.2493 13 8 0.9239 -5.0308 1.5617 14 6 0.5652 -5.6352 -0.8967 15 6 1.0412 -6.2887 -2.0232 16 6 0.1751 -6.6792 -3.0206 17 6 -1.1894 -6.4154 -2.8949 18 7 -2.2723 -6.6648 -3.6816 19 6 -3.3384 -6.2008 -3.0866 20 8 -4.5945 -6.2740 -3.5809 21 8 -3.0056 -5.6412 -1.9111 22 6 -1.6670 -5.7547 -1.7533 23 6 -0.7825 -5.3730 -0.7573 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 3.1351 -3.4539 -0.2181 28 1 2.0974 -6.4927 -2.1191 29 1 0.5504 -7.1884 -3.8960 30 1 -4.6537 -6.7111 -4.4415 31 1 -1.1467 -4.8670 0.1247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189772550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:49 Heat of formation + Delta-G solvation = -99.077331 kcal Electronic energy + Delta-G solvation = -21407.721294 eV Core-core repulsion = 17782.329165 eV Total energy + Delta-G solvation = -3625.392130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.050 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.60490 -39.76214 -38.87545 -38.32092 -36.95128 -36.48019 -35.88352 -34.12762 -32.03439 -30.80620 -28.73214 -25.32124 -24.65807 -24.45854 -23.36328 -20.97498 -20.19320 -19.66064 -19.07897 -18.87755 -18.52215 -17.77403 -17.53994 -17.08547 -16.35547 -15.92758 -15.62478 -15.19905 -15.17224 -14.95132 -14.57766 -14.12984 -14.09645 -13.87183 -13.56985 -13.25766 -13.17331 -12.94240 -12.79106 -12.56442 -12.46848 -12.32508 -12.07935 -11.82196 -11.38964 -10.85795 -10.17052 -10.10025 -9.77819 -8.24521 -6.36285 -0.90928 -0.54511 -0.11171 0.38517 0.96510 1.45385 1.46982 1.59254 2.01017 2.17562 2.29973 2.43708 2.74784 3.08162 3.11371 3.26745 3.65098 3.78482 3.87281 4.10131 4.42930 4.48195 4.60589 4.69201 4.82768 4.90260 5.25013 5.27987 5.31439 5.75162 5.76509 5.98205 6.33808 6.39128 6.79102 7.33820 8.86793 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.004966 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.640414 B = 5637.463158 C = 6924.528681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.255 3.745 10 N -1.098 6.098 11 S 2.717 3.283 12 O -0.971 6.971 13 O -0.991 6.991 14 C -0.664 4.664 15 C -0.015 4.015 16 C -0.086 4.086 17 C 0.090 3.910 18 N -0.533 5.533 19 C 0.475 3.525 20 O -0.397 6.397 21 O -0.215 6.215 22 C -0.043 4.043 23 C 0.019 3.981 24 H 0.267 0.733 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.422 0.578 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.465 0.535 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -13.501 -9.393 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.585 4.585 8 H 0.096 0.904 9 C 0.130 3.870 10 N -0.860 5.860 11 S 2.806 3.194 12 O -0.961 6.961 13 O -0.981 6.981 14 C -0.751 4.751 15 C -0.035 4.035 16 C -0.106 4.106 17 C -0.022 4.022 18 N -0.285 5.285 19 C 0.226 3.774 20 O -0.203 6.203 21 O -0.110 6.110 22 C -0.092 4.092 23 C -0.001 4.001 24 H 0.076 0.924 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.258 0.742 28 H 0.200 0.800 29 H 0.199 0.801 30 H 0.331 0.669 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.582 -13.912 -8.710 16.800 hybrid contribution -0.483 1.296 -0.385 1.435 sum -4.065 -12.617 -9.095 16.075 Atomic orbital electron populations 1.70072 1.07736 1.28274 1.50686 1.25893 0.95768 1.03264 0.94350 0.85286 0.79173 0.78296 0.77567 1.18191 1.20480 1.20765 1.21674 0.94328 0.90782 1.51740 0.90356 1.18712 0.88086 0.84550 0.95618 1.55235 1.19663 1.23281 1.87849 1.01002 0.72794 0.72115 0.73465 1.93535 1.49293 1.66054 1.87235 1.93537 1.73276 1.86605 1.44668 1.30898 1.08011 1.16339 1.19814 1.21157 1.02205 0.90966 0.89157 1.20696 0.87433 1.01279 1.01204 1.20081 0.95512 0.96663 0.89954 1.71306 0.96605 1.30137 1.30489 1.22658 0.87552 0.86513 0.80637 1.84738 1.14434 1.77430 1.43674 1.84377 1.23690 1.66638 1.36262 1.20032 0.79878 1.08297 1.01001 1.19645 0.89765 0.94340 0.96327 0.92374 0.96798 0.97072 0.74195 0.79956 0.80095 0.66890 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.22 13.29 21.45 0.28 -52.93 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -28.56 9.27 25.60 0.24 -28.32 16 8 H 0.08 3.82 7.65 -2.91 -0.02 3.80 16 9 C 0.26 12.45 5.98 85.64 0.51 12.96 16 10 N -1.10 -42.07 5.99 -190.79 -1.14 -43.22 16 11 S 2.72 95.28 5.73 -56.49 -0.32 94.95 16 12 O -0.97 -33.46 17.26 -128.00 -2.21 -35.67 16 13 O -0.99 -41.65 16.72 -128.00 -2.14 -43.79 16 14 C -0.66 -20.90 5.95 22.31 0.13 -20.77 16 15 C -0.01 -0.37 9.49 22.25 0.21 -0.16 16 16 C -0.09 -2.01 10.10 22.47 0.23 -1.79 16 17 C 0.09 2.55 7.23 39.28 0.28 2.83 16 18 N -0.53 -13.30 11.38 -422.75 -4.81 -18.11 16 19 C 0.47 11.27 9.54 130.42 1.24 12.51 16 20 O -0.40 -5.64 13.62 -62.36 -0.85 -6.49 16 21 O -0.21 -6.62 10.78 9.27 0.10 -6.52 16 22 C -0.04 -1.38 7.42 22.84 0.17 -1.21 16 23 C 0.02 0.65 9.52 22.29 0.21 0.87 16 24 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.01 0.75 7.75 -2.39 -0.02 0.74 16 26 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.42 14.23 8.54 -96.75 -0.83 13.40 16 28 H 0.18 3.46 7.59 -2.91 -0.02 3.44 16 29 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.47 0.82 9.06 -74.06 -0.67 0.15 16 31 H 0.15 5.12 7.59 -2.91 -0.02 5.09 16 Total: -1.00 -73.03 298.28 -5.64 -78.68 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.27 Total: 11.55 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.69 Total: -22.24 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -5.67 Total: -114.26 kcal Atomic # 8 Polarization: -87.37 SS G_CDS: -5.10 Total: -92.47 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 95.28 SS G_CDS: -0.32 Total: 94.95 kcal Total: -73.03 -5.64 -78.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189772550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.401 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds