Wall clock time and date at job start Tue Mar 31 2020 03:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 N 1.46900 * 109.47420 * 180.02562 * 3 2 1 5 5 C 1.47443 * 111.00127 * 69.15417 * 4 3 2 6 6 C 1.54316 * 107.23387 * 123.25914 * 5 4 3 7 7 C 1.55258 * 103.08624 * 22.20670 * 6 5 4 8 8 C 1.47847 * 111.00510 * 190.00052 * 4 3 2 9 9 H 1.09003 * 110.36669 * 332.57904 * 8 4 3 10 10 C 1.50698 * 110.37242 * 94.80266 * 8 4 3 11 11 O 1.21283 * 120.00472 * 358.45299 * 10 8 4 12 12 N 1.34777 * 119.99538 * 178.44636 * 10 8 4 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 C 1.53004 * 109.47137 * 65.00035 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46510 * 109.46916 * 175.00193 * 17 14 13 19 19 C 1.36928 * 119.99875 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00523 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00202 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99601 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00423 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47274 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47371 * 120.00315 * 23 21 19 26 26 H 1.48498 * 109.47575 * 239.99995 * 23 21 19 27 27 H 1.08998 * 109.47222 * 60.00141 * 1 2 3 28 28 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47060 * 299.99812 * 1 2 3 30 30 H 1.08998 * 109.47060 * 240.00188 * 2 1 3 31 31 H 1.08998 * 109.47222 * 119.99859 * 2 1 3 32 32 H 1.08996 * 109.47584 * 60.00010 * 3 2 1 33 33 H 1.09007 * 109.47340 * 299.99793 * 3 2 1 34 34 H 1.09002 * 109.89324 * 242.66990 * 5 4 3 35 35 H 1.09010 * 109.88637 * 3.85665 * 5 4 3 36 36 H 1.08995 * 110.70616 * 140.66929 * 6 5 4 37 37 H 1.08998 * 110.70622 * 263.72977 * 6 5 4 38 38 H 1.09000 * 111.09069 * 206.38237 * 7 6 5 39 39 H 1.09002 * 110.94709 * 82.52918 * 7 6 5 40 40 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 41 41 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 42 42 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 43 43 H 1.08990 * 109.46949 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.46939 * 300.00085 * 16 14 13 45 45 H 1.09003 * 109.46857 * 59.99834 * 16 14 13 46 46 H 1.09007 * 109.47047 * 294.99607 * 17 14 13 47 47 H 1.09000 * 109.47450 * 54.99982 * 17 14 13 48 48 H 0.96994 * 119.99660 * 359.97438 * 18 17 14 49 49 H 0.97003 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0369 0.9531 -1.2873 6 6 4.9550 2.0562 -1.8543 7 6 5.3440 2.8727 -0.5923 8 6 4.0389 2.8019 0.2390 9 1 3.3278 3.5526 -0.1060 10 6 4.3379 2.9978 1.7030 11 8 4.1079 2.1072 2.4935 12 7 4.8612 4.1627 2.1338 13 6 5.1464 4.3554 3.5578 14 6 5.7238 5.7552 3.7775 15 1 6.5950 5.8934 3.1372 16 6 4.6649 6.8038 3.4313 17 6 6.1373 5.9122 5.2422 18 7 6.7986 7.2064 5.4269 19 6 7.2578 7.5702 6.6645 20 1 7.1322 6.9032 7.5046 21 6 7.8848 8.7962 6.8395 22 7 8.0373 9.6093 5.8157 23 14 8.5106 9.2928 8.5279 24 1 8.2177 8.2111 9.5023 25 1 9.9771 9.5185 8.4657 26 1 7.8353 10.5434 8.9582 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 4.6093 0.0389 -1.1296 35 1 3.2146 0.7639 -1.9776 36 1 5.8390 1.6204 -2.3197 37 1 4.4141 2.6797 -2.5661 38 1 5.5865 3.9034 -0.8514 39 1 6.1708 2.4002 -0.0620 40 1 5.0450 4.8752 1.5017 41 1 4.2252 4.2484 4.1306 42 1 5.8684 3.6086 3.8881 43 1 5.0764 7.8009 3.5873 44 1 4.3703 6.6920 2.3878 45 1 3.7936 6.6655 4.0716 46 1 5.2525 5.8624 5.8768 47 1 6.8247 5.1109 5.5136 48 1 6.9110 7.8056 4.6724 49 1 8.4751 10.4662 5.9380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:39 Heat of formation + Delta-G solvation = -38.649650 kcal Electronic energy + Delta-G solvation = -24280.276612 eV Core-core repulsion = 20855.802992 eV Total energy + Delta-G solvation = -3424.473620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36043 -38.47254 -36.65929 -34.82643 -34.26713 -32.47584 -31.03236 -30.33031 -29.49714 -26.46667 -25.81740 -25.25365 -23.00036 -22.28654 -21.96851 -20.54327 -20.31971 -19.57288 -17.56138 -16.97610 -16.66627 -15.82305 -15.59355 -15.30083 -14.88626 -14.58320 -14.32037 -14.10020 -13.63951 -13.58571 -13.38237 -13.11775 -13.06821 -12.91643 -12.65078 -12.32590 -12.09581 -11.99259 -11.96157 -11.59902 -11.54782 -11.15948 -11.11961 -11.04712 -10.90571 -10.87926 -10.68665 -10.54635 -10.39035 -10.02149 -9.74670 -9.61284 -8.93559 -8.87369 -8.55916 -6.91447 -5.76750 -3.04854 2.71340 3.00438 3.43921 3.49932 3.52036 3.77355 4.20552 4.28370 4.54665 4.60059 4.71517 4.77463 4.83717 4.85880 5.07613 5.09318 5.12379 5.18353 5.24894 5.34479 5.39471 5.41060 5.46504 5.47240 5.50610 5.58605 5.64429 5.75659 5.83362 5.84289 5.94026 5.98619 6.03164 6.04529 6.13083 6.26678 6.40917 6.53633 6.61823 6.66782 6.78526 6.79101 6.88694 7.59452 7.71777 8.34491 8.42552 9.53868 10.11342 10.46218 11.46371 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.030446 B = 0.002342 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.446168 B =11950.291876 C =12413.895254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.507 5.507 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.119 4.119 8 C 0.054 3.946 9 H 0.078 0.922 10 C 0.518 3.482 11 O -0.520 6.520 12 N -0.728 5.728 13 C 0.129 3.871 14 C -0.110 4.110 15 H 0.076 0.924 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.398 0.602 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.052 0.948 46 H 0.022 0.978 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 -15.992 -19.387 27.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.231 5.231 5 C -0.085 4.085 6 C -0.180 4.180 7 C -0.158 4.158 8 C -0.058 4.058 9 H 0.096 0.904 10 C 0.302 3.698 11 O -0.394 6.394 12 N -0.381 5.381 13 C 0.005 3.995 14 C -0.129 4.129 15 H 0.094 0.906 16 C -0.198 4.198 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.232 0.768 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.708 -17.006 -18.203 27.525 hybrid contribution 0.220 1.514 -0.255 1.551 sum -11.488 -15.493 -18.458 26.696 Atomic orbital electron populations 1.21740 0.95674 1.01760 1.01730 1.21491 0.95220 0.96117 1.02788 1.22320 0.86706 0.97712 1.00564 1.63071 1.07939 1.20499 1.31608 1.22887 0.97950 0.98532 0.89087 1.22812 1.00270 0.97528 0.97363 1.22711 0.96285 1.01359 0.95400 1.22486 0.97836 0.92025 0.93491 0.90379 1.20297 0.77546 0.82054 0.89924 1.90698 1.51064 1.41449 1.56175 1.46057 1.65518 1.16511 1.10018 1.21375 1.00593 0.97115 0.80407 1.21545 0.98675 0.93007 0.99667 0.90578 1.21784 0.98482 1.00052 0.99492 1.20583 0.95292 0.89720 0.91210 1.42349 1.69577 1.16176 1.09450 1.19289 1.29928 1.00203 0.87363 0.91096 1.24741 1.01835 0.97125 0.97471 1.69671 1.49000 1.10580 1.29120 0.86103 0.78249 0.78113 0.83666 1.20538 1.21902 1.21897 0.93034 0.92518 0.92551 0.92217 0.90788 0.90740 0.94946 0.90225 0.92354 0.90235 0.91216 0.89821 0.89856 0.76826 0.91539 0.91464 0.91202 0.93979 0.92865 0.96011 0.96108 0.78228 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -0.99 5.95 -26.73 -0.16 -1.15 16 3 C 0.05 0.51 4.53 -3.82 -0.02 0.49 16 4 N -0.51 -5.22 4.34 -224.75 -0.98 -6.20 16 5 C 0.04 0.34 6.20 -2.84 -0.02 0.32 16 6 C -0.14 -0.91 6.94 -24.85 -0.17 -1.08 16 7 C -0.12 -0.92 6.46 -24.53 -0.16 -1.08 16 8 C 0.05 0.52 2.80 -67.34 -0.19 0.33 16 9 H 0.08 0.65 7.81 -51.93 -0.41 0.25 16 10 C 0.52 6.76 7.20 -10.99 -0.08 6.68 16 11 O -0.52 -9.04 16.49 5.55 0.09 -8.94 16 12 N -0.73 -8.56 5.24 -60.29 -0.32 -8.88 16 13 C 0.13 1.81 5.06 -4.04 -0.02 1.79 16 14 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 15 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 16 C -0.14 -2.07 8.94 37.16 0.33 -1.73 16 17 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 18 N -0.73 -18.36 5.33 -59.90 -0.32 -18.68 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.45 7.09 -51.93 -0.37 0.08 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.03 0.26 7.98 -51.93 -0.41 -0.16 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.39 6.88 -51.92 -0.36 0.03 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.75 8.05 -51.93 -0.42 0.34 16 40 H 0.40 3.73 7.65 -40.82 -0.31 3.42 16 41 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 44 H 0.04 0.49 7.18 -51.93 -0.37 0.12 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.38 9.99 6.85 -40.82 -0.28 9.71 16 49 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -33.01 387.83 -9.76 -42.78 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -9.19 Total: 6.23 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.60 Total: -2.21 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.89 Total: -61.20 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.01 -9.76 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.127 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds