Wall clock time and date at job start Tue Mar 31 2020 03:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 N 1.46900 * 109.47420 * 180.02562 * 3 2 1 5 5 C 1.47443 * 111.00127 * 69.15417 * 4 3 2 6 6 C 1.54316 * 107.23387 * 123.25914 * 5 4 3 7 7 C 1.55258 * 103.08624 * 22.20670 * 6 5 4 8 8 C 1.47847 * 111.00510 * 190.00052 * 4 3 2 9 9 H 1.09003 * 110.36669 * 332.57904 * 8 4 3 10 10 C 1.50698 * 110.37242 * 94.80266 * 8 4 3 11 11 O 1.21283 * 120.00472 * 358.45299 * 10 8 4 12 12 N 1.34777 * 119.99538 * 178.44636 * 10 8 4 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 C 1.53004 * 109.47137 * 65.00035 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46510 * 109.46916 * 175.00193 * 17 14 13 19 19 C 1.36928 * 119.99875 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00523 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00202 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99601 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00423 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47274 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47371 * 120.00315 * 23 21 19 26 26 H 1.48498 * 109.47575 * 239.99995 * 23 21 19 27 27 H 1.08998 * 109.47222 * 60.00141 * 1 2 3 28 28 H 1.09003 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47060 * 299.99812 * 1 2 3 30 30 H 1.08998 * 109.47060 * 240.00188 * 2 1 3 31 31 H 1.08998 * 109.47222 * 119.99859 * 2 1 3 32 32 H 1.08996 * 109.47584 * 60.00010 * 3 2 1 33 33 H 1.09007 * 109.47340 * 299.99793 * 3 2 1 34 34 H 1.09002 * 109.89324 * 242.66990 * 5 4 3 35 35 H 1.09010 * 109.88637 * 3.85665 * 5 4 3 36 36 H 1.08995 * 110.70616 * 140.66929 * 6 5 4 37 37 H 1.08998 * 110.70622 * 263.72977 * 6 5 4 38 38 H 1.09000 * 111.09069 * 206.38237 * 7 6 5 39 39 H 1.09002 * 110.94709 * 82.52918 * 7 6 5 40 40 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 41 41 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 42 42 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 43 43 H 1.08990 * 109.46949 * 180.02562 * 16 14 13 44 44 H 1.09000 * 109.46939 * 300.00085 * 16 14 13 45 45 H 1.09003 * 109.46857 * 59.99834 * 16 14 13 46 46 H 1.09007 * 109.47047 * 294.99607 * 17 14 13 47 47 H 1.09000 * 109.47450 * 54.99982 * 17 14 13 48 48 H 0.96994 * 119.99660 * 359.97438 * 18 17 14 49 49 H 0.97003 * 119.99727 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0369 0.9531 -1.2873 6 6 4.9550 2.0562 -1.8543 7 6 5.3440 2.8727 -0.5923 8 6 4.0389 2.8019 0.2390 9 1 3.3278 3.5526 -0.1060 10 6 4.3379 2.9978 1.7030 11 8 4.1079 2.1072 2.4935 12 7 4.8612 4.1627 2.1338 13 6 5.1464 4.3554 3.5578 14 6 5.7238 5.7552 3.7775 15 1 6.5950 5.8934 3.1372 16 6 4.6649 6.8038 3.4313 17 6 6.1373 5.9122 5.2422 18 7 6.7986 7.2064 5.4269 19 6 7.2578 7.5702 6.6645 20 1 7.1322 6.9032 7.5046 21 6 7.8848 8.7962 6.8395 22 7 8.0373 9.6093 5.8157 23 14 8.5106 9.2928 8.5279 24 1 8.2177 8.2111 9.5023 25 1 9.9771 9.5185 8.4657 26 1 7.8353 10.5434 8.9582 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 4.6093 0.0389 -1.1296 35 1 3.2146 0.7639 -1.9776 36 1 5.8390 1.6204 -2.3197 37 1 4.4141 2.6797 -2.5661 38 1 5.5865 3.9034 -0.8514 39 1 6.1708 2.4002 -0.0620 40 1 5.0450 4.8752 1.5017 41 1 4.2252 4.2484 4.1306 42 1 5.8684 3.6086 3.8881 43 1 5.0764 7.8009 3.5873 44 1 4.3703 6.6920 2.3878 45 1 3.7936 6.6655 4.0716 46 1 5.2525 5.8624 5.8768 47 1 6.8247 5.1109 5.5136 48 1 6.9110 7.8056 4.6724 49 1 8.4751 10.4662 5.9380 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753617492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:39 Heat of formation + Delta-G solvation = -61.410978 kcal Electronic energy + Delta-G solvation = -24281.263617 eV Core-core repulsion = 20855.802992 eV Total energy + Delta-G solvation = -3425.460625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24788 -39.39116 -38.06660 -35.93479 -35.43432 -34.06405 -32.01805 -31.63302 -30.44693 -27.73329 -26.98665 -26.40646 -24.55549 -23.16198 -22.86166 -21.52803 -21.20140 -20.70951 -19.20344 -18.22018 -17.53061 -16.95790 -16.51585 -16.48015 -16.24975 -15.59061 -15.49895 -15.34388 -15.17452 -14.73027 -14.35785 -14.16745 -13.99562 -13.70500 -13.67846 -13.57212 -13.54235 -12.96266 -12.84208 -12.75578 -12.65727 -12.26135 -12.17634 -12.13017 -12.08620 -11.98896 -11.78887 -11.70264 -11.66498 -11.64196 -11.53192 -10.95849 -10.74307 -10.04394 -9.25328 -8.99661 -7.95984 -5.24070 1.47688 1.47900 1.58296 1.70553 2.07004 2.56181 3.03211 3.37744 3.55265 3.64104 3.73848 3.95334 3.97347 4.02163 4.08263 4.11765 4.18634 4.22252 4.35469 4.47204 4.54150 4.55316 4.55637 4.71415 4.73598 4.77367 4.80298 4.88037 4.93111 4.94672 4.97618 5.05014 5.08800 5.13030 5.17585 5.27548 5.33681 5.34839 5.38802 5.43540 5.49943 5.51626 5.92533 6.13613 6.27088 6.64865 7.33828 7.34917 8.08696 8.33593 9.27618 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.030446 B = 0.002342 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.446168 B =11950.291876 C =12413.895254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.058 3.942 4 N -0.535 5.535 5 C 0.042 3.958 6 C -0.133 4.133 7 C -0.117 4.117 8 C 0.057 3.943 9 H 0.099 0.901 10 C 0.515 3.485 11 O -0.570 6.570 12 N -0.715 5.715 13 C 0.141 3.859 14 C -0.092 4.092 15 H 0.080 0.920 16 C -0.134 4.134 17 C 0.156 3.844 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.973 3.027 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.413 0.587 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.377 0.623 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 -16.121 -21.146 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.070 4.070 4 N -0.260 5.260 5 C -0.085 4.085 6 C -0.171 4.171 7 C -0.155 4.155 8 C -0.055 4.055 9 H 0.117 0.883 10 C 0.301 3.699 11 O -0.447 6.447 12 N -0.369 5.369 13 C 0.016 3.984 14 C -0.111 4.111 15 H 0.098 0.902 16 C -0.192 4.192 17 C 0.029 3.971 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.802 3.198 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.250 0.750 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.210 0.790 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.217 -17.148 -19.986 29.030 hybrid contribution 0.350 1.474 0.298 1.544 sum -11.867 -15.674 -19.688 27.823 Atomic orbital electron populations 1.21714 0.94547 1.02313 1.01964 1.21453 0.96173 0.95613 1.02022 1.22283 0.86417 0.98004 1.00310 1.62969 1.08530 1.21096 1.33412 1.22914 0.98601 0.98691 0.88341 1.22800 1.00491 0.96922 0.96877 1.22745 0.94495 1.02869 0.95408 1.22500 0.99432 0.92533 0.90997 0.88300 1.21015 0.76304 0.81298 0.91249 1.90677 1.53213 1.43086 1.57775 1.45892 1.64897 1.16877 1.09208 1.21062 0.99772 0.95655 0.81879 1.21318 0.99162 0.94101 0.96562 0.90187 1.21717 0.97721 0.98024 1.01715 1.20729 0.94578 0.87358 0.94433 1.42506 1.69806 1.17706 1.08388 1.19653 1.29279 1.00248 0.88533 0.90950 1.25545 1.02755 0.97377 1.01054 1.69810 1.50139 1.10838 1.31012 0.85080 0.77270 0.77732 0.79718 1.19320 1.21938 1.21909 0.91753 0.91843 0.93314 0.91187 0.93281 0.92872 0.93083 0.91133 0.90983 0.89224 0.89484 0.87518 0.91604 0.75036 0.92286 0.92626 0.93830 0.90443 0.93151 0.96228 0.96390 0.79020 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.11 -1.85 5.95 30.59 0.18 -1.67 16 3 C 0.06 1.01 4.53 86.30 0.39 1.40 16 4 N -0.54 -10.45 4.34 -864.96 -3.76 -14.21 16 5 C 0.04 0.57 6.20 86.65 0.54 1.11 16 6 C -0.13 -1.30 6.94 31.82 0.22 -1.08 16 7 C -0.12 -1.51 6.46 32.02 0.21 -1.30 16 8 C 0.06 1.01 2.80 44.64 0.13 1.13 16 9 H 0.10 1.35 7.81 -2.39 -0.02 1.34 16 10 C 0.52 13.08 7.20 87.66 0.63 13.71 16 11 O -0.57 -20.16 16.49 -3.04 -0.05 -20.21 16 12 N -0.72 -15.78 5.24 -463.05 -2.43 -18.21 16 13 C 0.14 3.87 5.06 86.38 0.44 4.31 16 14 C -0.09 -2.77 2.46 -10.79 -0.03 -2.80 16 15 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 16 C -0.13 -3.78 8.94 71.98 0.64 -3.14 16 17 C 0.16 6.25 5.65 86.38 0.49 6.74 16 18 N -0.74 -37.49 5.33 -343.43 -1.83 -39.32 16 19 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 22 N -0.97 -58.79 13.06 21.65 0.28 -58.51 16 23 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.97 7.09 -2.39 -0.02 0.95 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.05 0.69 7.98 -2.38 -0.02 0.67 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 0.78 6.88 -2.38 -0.02 0.76 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.10 8.05 -2.39 -0.02 1.08 16 40 H 0.41 6.64 7.65 -92.71 -0.71 5.93 16 41 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.04 1.47 7.18 -2.39 -0.02 1.45 16 44 H 0.08 1.61 7.18 -2.39 -0.02 1.60 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.38 19.88 6.85 -92.71 -0.64 19.24 16 49 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -72.09 387.83 -0.33 -72.42 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.43 Total: 29.21 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.86 Total: 0.37 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -7.73 Total: -130.24 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -72.09 -0.33 -72.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.010 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds