Wall clock time and date at job start Tue Mar 31 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47143 * 2 1 4 4 N 1.46900 * 109.47488 * 180.02562 * 3 2 1 5 5 C 1.48567 * 110.99718 * 290.12475 * 4 3 2 6 6 C 1.54377 * 104.59159 * 200.95714 * 5 4 3 7 7 C 1.54257 * 105.06382 * 23.85582 * 6 5 4 8 8 C 1.48720 * 111.01831 * 174.61493 * 4 3 2 9 9 H 1.09004 * 110.38960 * 40.24251 * 8 4 3 10 10 C 1.50698 * 110.50844 * 277.74858 * 8 4 3 11 11 O 1.21277 * 120.00116 * 3.40959 * 10 8 4 12 12 N 1.34775 * 119.99704 * 183.40764 * 10 8 4 13 13 C 1.46507 * 119.99727 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47170 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47184 * 305.00434 * 14 13 12 16 16 C 1.52998 * 109.47428 * 65.00021 * 14 13 12 17 17 C 1.52999 * 109.47408 * 185.00231 * 14 13 12 18 18 N 1.46497 * 109.47331 * 174.99559 * 17 14 13 19 19 C 1.36938 * 119.99970 * 179.97438 * 18 17 14 20 20 H 1.08002 * 119.99989 * 0.02562 * 19 18 17 21 21 C 1.38808 * 119.99895 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00123 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99773 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47368 * 90.00597 * 23 21 19 25 25 H 1.48500 * 109.47017 * 210.00442 * 23 21 19 26 26 H 1.48500 * 109.47176 * 330.00389 * 23 21 19 27 27 H 1.09006 * 109.46842 * 60.00102 * 1 2 3 28 28 H 1.08998 * 109.47304 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47483 * 300.00126 * 1 2 3 30 30 H 1.08999 * 109.47483 * 239.99874 * 2 1 3 31 31 H 1.09004 * 109.47435 * 119.99439 * 2 1 3 32 32 H 1.08999 * 109.47034 * 59.99599 * 3 2 1 33 33 H 1.09006 * 109.47168 * 299.99698 * 3 2 1 34 34 H 1.08999 * 110.41133 * 82.17552 * 5 4 3 35 35 H 1.09004 * 110.50861 * 319.79003 * 5 4 3 36 36 H 1.08995 * 110.32829 * 264.95217 * 6 5 4 37 37 H 1.09013 * 110.40613 * 142.79346 * 6 5 4 38 38 H 1.09002 * 110.32715 * 118.89422 * 7 6 5 39 39 H 1.08998 * 110.32251 * 240.99949 * 7 6 5 40 40 H 0.96997 * 120.00569 * 0.02562 * 12 10 8 41 41 H 1.09000 * 109.47229 * 300.00407 * 13 12 10 42 42 H 1.09004 * 109.46940 * 60.00311 * 13 12 10 43 43 H 1.09010 * 109.46902 * 300.00222 * 16 14 13 44 44 H 1.09000 * 109.47284 * 59.99888 * 16 14 13 45 45 H 1.08991 * 109.47465 * 180.02562 * 16 14 13 46 46 H 1.09000 * 109.46585 * 295.00330 * 17 14 13 47 47 H 1.09005 * 109.47114 * 54.99600 * 17 14 13 48 48 H 0.96996 * 119.99964 * 0.02562 * 18 17 14 49 49 H 0.97006 * 119.99877 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0419 0.9652 1.3014 6 6 5.4837 1.5141 1.3563 7 6 5.4834 2.7367 0.4156 8 6 4.0422 2.8248 -0.1309 9 1 3.4506 3.5180 0.4671 10 6 4.0533 3.2524 -1.5759 11 8 3.6015 2.5183 -2.4290 12 7 4.5653 4.4506 -1.9202 13 6 4.5766 4.8661 -3.3250 14 6 5.2074 6.2551 -3.4410 15 1 4.6802 6.9494 -2.7867 16 6 6.6790 6.1831 -3.0285 17 6 5.1067 6.7418 -4.8881 18 7 5.6017 8.1178 -4.9761 19 6 5.6090 8.7670 -6.1818 20 1 5.2495 8.2647 -7.0677 21 6 6.0775 10.0710 -6.2650 22 7 6.5151 10.6833 -5.1853 23 14 6.0868 10.9568 -7.9097 24 1 4.7983 11.6715 -8.0943 25 1 7.2039 11.9348 -7.9388 26 1 6.2657 9.9682 -9.0033 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9564 -0.8901 34 1 4.0483 -0.1243 1.3331 35 1 3.4511 1.3651 2.1256 36 1 6.1887 0.7628 1.0004 37 1 5.7363 1.8181 2.3722 38 1 5.7340 3.6411 0.9701 39 1 6.1894 2.5862 -0.4010 40 1 4.9270 5.0376 -1.2379 41 1 5.1579 4.1534 -3.9100 42 1 3.5546 4.8981 -3.7027 43 1 6.7507 5.8364 -1.9975 44 1 7.2062 5.4888 -3.6828 45 1 7.1282 7.1727 -3.1107 46 1 5.7072 6.0977 -5.5305 47 1 4.0661 6.7086 -5.2110 48 1 5.9248 8.5688 -4.1805 49 1 6.8428 11.5944 -5.2436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753617493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:42 Heat of formation + Delta-G solvation = -39.182521 kcal Electronic energy + Delta-G solvation = -24315.129179 eV Core-core repulsion = 20890.632452 eV Total energy + Delta-G solvation = -3424.496727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 297.216 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38050 -38.41258 -36.67145 -34.87716 -34.27796 -32.49107 -31.09144 -30.32085 -29.46623 -26.45726 -25.81570 -25.25108 -23.01829 -22.15746 -21.89569 -20.66772 -20.35611 -19.61045 -17.57591 -16.89689 -16.55074 -16.00899 -15.48439 -15.27125 -14.95855 -14.47032 -14.41595 -14.17899 -13.77719 -13.49514 -13.36403 -13.20853 -13.07781 -12.81708 -12.61696 -12.35082 -12.09546 -12.00788 -11.87976 -11.61582 -11.57520 -11.14302 -11.05706 -10.98294 -10.89948 -10.80485 -10.69308 -10.54796 -10.40245 -10.05791 -9.76289 -9.62522 -8.97096 -8.87264 -8.73805 -6.91896 -5.76889 -3.05125 2.66715 3.00699 3.44184 3.49444 3.51056 3.76761 4.23294 4.29225 4.56841 4.59758 4.73918 4.81326 4.83528 4.86788 5.07786 5.09925 5.16304 5.20206 5.24347 5.30970 5.40038 5.41810 5.44094 5.51957 5.57228 5.58272 5.70867 5.76544 5.80411 5.83656 5.96084 5.98368 6.01651 6.03644 6.12249 6.26141 6.40597 6.46718 6.54995 6.66117 6.72998 6.78359 6.88099 7.55348 7.70929 8.29157 8.42387 9.53633 10.11045 10.45887 11.46144 Molecular weight = 297.22amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.002393 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.423929 B =11698.429039 C =12399.520526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.046 3.954 4 N -0.486 5.486 5 C 0.032 3.968 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.042 3.958 9 H 0.076 0.924 10 C 0.520 3.480 11 O -0.522 6.522 12 N -0.727 5.727 13 C 0.129 3.871 14 C -0.110 4.110 15 H 0.075 0.925 16 C -0.141 4.141 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.398 0.602 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.022 0.978 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -19.960 17.864 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.082 4.082 4 N -0.210 5.210 5 C -0.096 4.096 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.070 4.070 9 H 0.094 0.906 10 C 0.304 3.696 11 O -0.397 6.397 12 N -0.379 5.379 13 C 0.005 3.995 14 C -0.129 4.129 15 H 0.094 0.906 16 C -0.198 4.198 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.233 0.767 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.040 0.960 47 H 0.038 0.962 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.850 -20.812 16.590 27.250 hybrid contribution -0.024 1.619 0.365 1.660 sum -5.873 -19.193 16.955 26.274 Atomic orbital electron populations 1.21738 0.95638 1.01723 1.01818 1.21440 0.95342 0.96039 1.02575 1.22356 0.86935 0.97874 1.01025 1.65105 1.08489 1.16854 1.30585 1.23167 0.95073 1.01192 0.90176 1.22286 0.96833 0.97496 0.99480 1.22282 0.94436 0.99071 0.99634 1.22640 0.97833 0.92361 0.94159 0.90602 1.20197 0.77956 0.81179 0.90229 1.90700 1.45231 1.52446 1.51313 1.46052 1.62988 1.18818 1.10087 1.21387 1.01246 0.95823 0.81059 1.21545 0.96790 0.94733 0.99841 0.90620 1.21784 0.95564 1.03033 0.99429 1.20576 0.96873 0.87764 0.91569 1.42340 1.76426 1.09835 1.08940 1.19242 1.34938 0.95295 0.87418 0.91157 1.24737 1.01942 0.97186 0.97237 1.69658 1.48788 1.12968 1.26959 0.86175 0.77140 0.79485 0.83322 1.21742 1.21792 1.20746 0.92476 0.92538 0.93022 0.90871 0.92342 0.94982 0.90061 0.89709 0.93716 0.90643 0.90963 0.90328 0.90261 0.76735 0.91406 0.91512 0.93925 0.92821 0.91204 0.95990 0.96160 0.78222 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.00 5.99 -26.73 -0.16 -1.16 16 3 C 0.05 0.45 4.62 -3.82 -0.02 0.44 16 4 N -0.49 -5.04 4.66 -223.36 -1.04 -6.08 16 5 C 0.03 0.24 5.74 -2.18 -0.01 0.23 16 6 C -0.12 -0.83 7.00 -25.35 -0.18 -1.01 16 7 C -0.12 -0.90 6.47 -25.35 -0.16 -1.06 16 8 C 0.04 0.41 2.69 -67.13 -0.18 0.23 16 9 H 0.08 0.64 8.00 -51.93 -0.42 0.23 16 10 C 0.52 6.74 6.89 -10.99 -0.08 6.67 16 11 O -0.52 -8.92 15.73 5.56 0.09 -8.83 16 12 N -0.73 -8.50 5.22 -60.29 -0.31 -8.82 16 13 C 0.13 1.79 5.06 -4.04 -0.02 1.77 16 14 C -0.11 -1.69 2.46 -90.62 -0.22 -1.91 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 17 C 0.16 3.20 5.65 -4.04 -0.02 3.17 16 18 N -0.73 -18.34 5.33 -59.91 -0.32 -18.66 16 19 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.44 7.26 -51.93 -0.38 0.07 16 32 H 0.03 0.28 7.89 -51.93 -0.41 -0.13 16 33 H 0.08 0.97 7.32 -51.93 -0.38 0.59 16 34 H 0.08 0.61 7.76 -51.93 -0.40 0.21 16 35 H 0.04 0.30 7.83 -51.93 -0.41 -0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 40 H 0.40 3.74 7.63 -40.82 -0.31 3.43 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.04 0.50 7.18 -51.92 -0.37 0.12 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.20 7.18 -51.93 -0.37 0.82 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 9.98 6.85 -40.82 -0.28 9.71 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -32.76 386.52 -9.84 -42.60 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -9.18 Total: 6.37 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.60 Total: -2.47 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.95 Total: -60.98 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.76 -9.84 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753617493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.416 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds