Wall clock time and date at job start Tue Mar 31 2020 03:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86795 * 120.00305 * 2 1 4 4 H 1.48503 * 109.46881 * 275.34591 * 3 2 1 5 5 H 1.48505 * 109.47281 * 35.34108 * 3 2 1 6 6 H 1.48493 * 109.47522 * 155.34486 * 3 2 1 7 7 C 1.39025 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99915 * 341.33425 * 7 2 1 9 9 N 1.37171 * 119.99722 * 161.61232 * 7 2 1 10 10 C 1.36108 * 119.85971 * 328.77494 * 9 7 2 11 11 N 1.29987 * 121.77723 * 179.68233 * 10 9 7 12 12 C 1.35057 * 121.74242 * 0.62578 * 11 10 9 13 13 S 1.75862 * 130.57175 * 179.69595 * 12 11 10 14 14 C 1.75298 * 92.34632 * 179.97438 * 13 12 11 15 15 C 1.33405 * 111.16314 * 359.97438 * 14 13 12 16 16 C 1.48207 * 122.80942 * 180.02562 * 15 14 13 17 17 C 1.39437 * 120.13283 * 129.69933 * 16 15 14 18 18 C 1.37996 * 119.87072 * 179.74929 * 17 16 15 19 19 C 1.38341 * 120.12863 * 0.54765 * 18 17 16 20 20 C 1.38348 * 120.25930 * 359.70191 * 19 18 17 21 21 C 1.37985 * 120.13498 * 0.02562 * 20 19 18 22 22 C 1.39030 * 119.53151 * 359.66727 * 12 11 10 23 23 C 1.34734 * 119.86240 * 149.05365 * 9 7 2 24 24 O 1.21877 * 120.61846 * 0.02562 * 23 9 7 25 25 H 0.96997 * 119.99262 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.11416 * 359.97438 * 10 9 7 27 27 H 1.08002 * 124.41978 * 180.02562 * 14 13 12 28 28 H 1.08003 * 120.06402 * 359.97438 * 17 16 15 29 29 H 1.07995 * 119.93575 * 180.29703 * 18 17 16 30 30 H 1.07993 * 119.86987 * 179.72748 * 19 18 17 31 31 H 1.08003 * 119.92830 * 180.02562 * 20 19 18 32 32 H 1.07995 * 120.06925 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 2.3815 2.1115 -1.3940 5 1 1.5055 2.6175 0.8099 6 1 3.5964 1.4101 0.5840 7 6 2.0080 -1.2040 0.0005 8 1 1.5106 -2.1146 0.3003 9 7 3.3272 -1.2345 -0.3742 10 6 3.7894 -0.3499 -1.2996 11 7 5.0332 -0.3416 -1.6773 12 6 5.9323 -1.2188 -1.1811 13 16 7.6450 -1.4196 -1.5261 14 6 7.7895 -2.7537 -0.3982 15 6 6.6209 -3.0166 0.1891 16 6 6.4502 -4.0960 1.1902 17 6 5.8310 -3.8275 2.4104 18 6 5.6701 -4.8379 3.3365 19 6 6.1320 -6.1125 3.0609 20 6 6.7517 -6.3836 1.8541 21 6 6.9132 -5.3828 0.9180 22 6 5.5272 -2.1545 -0.2359 23 6 4.1587 -2.1437 0.1712 24 8 3.7502 -2.9423 0.9962 25 1 -0.4849 0.8401 -0.0004 26 1 3.1054 0.3676 -1.7282 27 1 8.7053 -3.2921 -0.2036 28 1 5.4747 -2.8316 2.6288 29 1 5.1864 -4.6322 4.2799 30 1 6.0078 -6.8990 3.7904 31 1 7.1099 -7.3807 1.6443 32 1 7.3968 -5.5957 -0.0239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000144783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:54 Heat of formation + Delta-G solvation = 53.634367 kcal Electronic energy + Delta-G solvation = -20950.641157 eV Core-core repulsion = 17775.013118 eV Total energy + Delta-G solvation = -3175.628039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.052 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.90436 -38.85515 -36.57237 -36.25954 -34.10542 -32.42874 -30.59693 -30.43203 -28.42591 -26.36515 -24.49370 -23.23377 -22.22851 -22.03285 -19.95500 -18.75754 -17.78280 -17.17588 -16.42784 -16.01286 -15.76719 -15.08661 -14.88884 -14.44724 -13.97427 -13.79307 -13.39998 -13.19492 -13.08575 -12.89755 -12.57451 -12.42289 -12.21315 -11.95141 -11.37384 -11.32167 -11.11229 -10.74001 -10.52170 -10.42870 -10.04055 -9.40614 -9.25349 -8.99363 -8.59582 -8.45580 -7.82973 -7.40049 -7.24864 -4.79120 0.92236 1.48402 1.74256 1.78650 2.36040 2.41998 2.69121 2.71525 2.88377 2.91722 3.50364 3.70478 4.02921 4.17019 4.68051 4.88511 5.08316 5.16735 5.25498 5.27220 5.44397 5.67685 5.74773 5.77511 5.90637 6.05539 6.29237 6.33169 6.45613 6.53574 6.74843 6.78439 6.85972 7.01436 7.29528 7.32086 7.67131 8.02895 8.15303 8.62548 8.97899 9.79860 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.006307 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.463012 B = 4438.278824 C = 5801.320189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.070 3.930 3 Si 0.873 3.127 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.317 4.317 8 H 0.138 0.862 9 N -0.341 5.341 10 C 0.282 3.718 11 N -0.527 5.527 12 C 0.092 3.908 13 S 0.127 5.873 14 C -0.242 4.242 15 C 0.017 3.983 16 C -0.025 4.025 17 C -0.057 4.057 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.107 4.107 22 C -0.262 4.262 23 C 0.516 3.484 24 O -0.532 6.532 25 H 0.295 0.705 26 H 0.190 0.810 27 H 0.166 0.834 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.901 -3.260 0.585 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.147 4.147 3 Si 0.696 3.304 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.447 4.447 8 H 0.155 0.845 9 N -0.039 5.039 10 C 0.001 3.999 11 N -0.254 5.254 12 C -0.150 4.150 13 S 0.387 5.613 14 C -0.377 4.377 15 C 0.005 3.995 16 C -0.027 4.027 17 C -0.075 4.075 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.150 4.150 21 C -0.125 4.125 22 C -0.279 4.279 23 C 0.315 3.685 24 O -0.412 6.412 25 H 0.106 0.894 26 H 0.206 0.794 27 H 0.183 0.817 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.720 -2.472 -0.332 11.982 hybrid contribution -1.213 -0.267 1.435 1.898 sum 10.507 -2.739 1.103 10.914 Atomic orbital electron populations 1.69613 1.06468 1.30439 1.36080 1.25558 0.95748 0.99330 0.94034 0.86834 0.81317 0.81916 0.80341 1.17890 1.19235 1.17497 1.19897 0.81708 0.98978 1.44128 0.84496 1.42940 1.11068 1.23775 1.26085 1.24480 0.92110 0.94582 0.88694 1.67701 1.00431 1.26642 1.30653 1.23447 0.98651 0.95586 0.97294 1.83538 1.00654 1.32610 1.44525 1.24913 1.01251 1.05484 1.06004 1.17946 0.90947 0.94747 0.95854 1.18400 0.99021 0.92172 0.93156 1.21153 0.94385 0.99691 0.92284 1.21021 1.00376 0.93149 0.99666 1.21104 0.99140 0.96645 0.97121 1.20918 1.01085 0.98661 0.94330 1.21120 1.00153 0.92093 0.99175 1.20368 0.95511 1.04290 1.07730 1.16647 0.84785 0.83698 0.83341 1.90799 1.77493 1.39228 1.33651 0.89413 0.79411 0.81699 0.86133 0.86331 0.86608 0.86432 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.36 13.95 55.50 0.77 -18.59 16 2 C 0.07 1.66 5.31 -17.49 -0.09 1.57 16 3 Si 0.87 17.76 24.68 -169.99 -4.20 13.57 16 4 H -0.25 -4.72 6.75 56.52 0.38 -4.34 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.25 -5.45 6.91 56.52 0.39 -5.06 16 7 C -0.32 -8.06 9.52 -14.87 -0.14 -8.20 16 8 H 0.14 3.83 7.78 -52.49 -0.41 3.42 16 9 N -0.34 -8.31 2.51 -65.32 -0.16 -8.47 16 10 C 0.28 6.26 8.67 -89.82 -0.78 5.49 16 11 N -0.53 -11.45 10.42 -12.56 -0.13 -11.58 16 12 C 0.09 1.93 7.68 -15.84 -0.12 1.81 16 13 S 0.13 2.08 23.22 -107.50 -2.50 -0.42 16 14 C -0.24 -3.87 10.65 29.04 0.31 -3.56 16 15 C 0.02 0.33 5.50 -104.55 -0.57 -0.24 16 16 C -0.03 -0.46 5.23 -104.91 -0.55 -1.01 16 17 C -0.06 -1.06 7.63 -39.22 -0.30 -1.36 16 18 C -0.12 -1.99 10.03 -39.63 -0.40 -2.39 16 19 C -0.12 -1.72 10.04 -39.50 -0.40 -2.12 16 20 C -0.13 -1.83 10.03 -39.63 -0.40 -2.23 16 21 C -0.11 -1.67 9.59 -39.23 -0.38 -2.04 16 22 C -0.26 -5.85 5.99 -104.91 -0.63 -6.48 16 23 C 0.52 12.86 7.43 -14.52 -0.11 12.75 16 24 O -0.53 -14.12 13.60 5.03 0.07 -14.05 16 25 H 0.29 6.40 8.31 -40.82 -0.34 6.06 16 26 H 0.19 3.81 4.68 -52.49 -0.25 3.57 16 27 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.12 2.45 7.41 -52.48 -0.39 2.07 16 29 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 290.92 15.07 4.38 4.38 Total: -1.00 -27.86 290.92 -8.64 -36.50 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -2.32 Total: 6.68 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.55 Total: -8.02 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.48 Total: -38.64 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -4.20 Total: 13.57 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.50 Total: -0.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.86 -8.64 -36.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000144783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.131 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds