Wall clock time and date at job start Tue Mar 31 2020 03:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48504 * 109.46816 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47201 * 300.00148 * 3 2 1 6 6 H 1.48502 * 109.46828 * 60.00305 * 3 2 1 7 7 C 1.39014 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00357 * 197.85027 * 7 2 1 9 9 N 1.37184 * 120.00373 * 17.85218 * 7 2 1 10 10 C 1.36105 * 119.79426 * 28.62391 * 9 7 2 11 11 N 1.30061 * 121.78941 * 179.97438 * 10 9 7 12 12 C 1.34840 * 121.73328 * 0.02562 * 11 10 9 13 13 S 1.75986 * 130.80792 * 179.97438 * 12 11 10 14 14 C 1.75520 * 91.58360 * 180.02562 * 13 12 11 15 15 C 1.47804 * 124.71087 * 179.97438 * 14 13 12 16 16 C 1.39587 * 120.14908 * 179.69865 * 15 14 13 17 17 C 1.37953 * 119.85052 * 179.72070 * 16 15 14 18 18 C 1.38356 * 120.14865 * 0.56119 * 17 16 15 19 19 C 1.38363 * 120.29471 * 359.71344 * 18 17 16 20 20 C 1.37954 * 120.14606 * 0.02562 * 19 18 17 21 21 C 1.33606 * 110.57876 * 359.97438 * 14 13 12 22 22 C 1.39466 * 119.72882 * 0.02562 * 12 11 10 23 23 C 1.34704 * 119.80754 * 208.64677 * 9 7 2 24 24 O 1.21844 * 120.61630 * 0.02562 * 23 9 7 25 25 H 0.96999 * 119.99765 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.10484 * 359.97438 * 10 9 7 27 27 H 1.08000 * 120.07115 * 359.97438 * 16 15 14 28 28 H 1.08008 * 119.92484 * 180.29971 * 17 16 15 29 29 H 1.07997 * 119.85633 * 179.69958 * 18 17 16 30 30 H 1.07999 * 119.92975 * 180.02562 * 19 18 17 31 31 H 1.08000 * 120.07153 * 180.02562 * 20 19 18 32 32 H 1.07999 * 122.25057 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8882 2.3964 1.2126 7 6 2.0080 -1.2039 -0.0005 8 1 3.0491 -1.2266 0.2862 9 7 1.3717 -2.3632 -0.3653 10 6 0.3319 -2.3169 -1.2423 11 7 -0.2985 -3.3917 -1.6150 12 6 0.0436 -4.6111 -1.1520 13 16 -0.6331 -6.2004 -1.4883 14 6 0.5184 -6.9722 -0.4117 15 6 0.5808 -8.4252 -0.1479 16 6 1.5424 -8.9388 0.7239 17 6 1.5914 -10.2953 0.9701 18 6 0.6976 -11.1475 0.3463 19 6 -0.2545 -10.6456 -0.5233 20 6 -0.3178 -9.2906 -0.7742 21 6 1.3307 -6.0639 0.1362 22 6 1.0990 -4.7369 -0.2490 23 6 1.7793 -3.5405 0.1471 24 8 2.7091 -3.5865 0.9332 25 1 -0.4850 0.8401 -0.0004 26 1 0.0220 -1.3617 -1.6396 27 1 2.2438 -8.2752 1.2076 28 1 2.3319 -10.6934 1.6481 29 1 0.7433 -12.2092 0.5388 30 1 -0.9495 -11.3161 -1.0067 31 1 -1.0617 -8.9001 -1.4529 32 1 2.1124 -6.3342 0.8307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000616261.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:52 Heat of formation + Delta-G solvation = 40.107867 kcal Electronic energy + Delta-G solvation = -20086.345086 eV Core-core repulsion = 16910.130493 eV Total energy + Delta-G solvation = -3176.214592 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66561 -39.07096 -36.56159 -36.33843 -34.17144 -32.10887 -31.18155 -30.88670 -27.67537 -26.42209 -24.39489 -22.93623 -22.80383 -21.82355 -20.17650 -18.74853 -17.80899 -16.88329 -16.44533 -15.76751 -15.65434 -15.00190 -14.86951 -14.47986 -14.35058 -13.88706 -13.37666 -13.16407 -13.13083 -12.74670 -12.43322 -12.32978 -12.15406 -11.70219 -11.51378 -11.31614 -11.17441 -11.11430 -10.71696 -10.43301 -10.08707 -9.26727 -9.17331 -8.97782 -8.92087 -8.58335 -7.98941 -7.27852 -6.96149 -4.78668 0.71820 1.44807 1.60913 1.80761 2.43395 2.57081 2.84692 2.89939 2.98184 3.04062 3.55860 3.96515 4.09710 4.18080 4.82668 4.84983 4.95325 4.99187 5.16111 5.28839 5.47092 5.54589 5.68437 5.74089 5.94355 6.05652 6.19706 6.39292 6.48254 6.53383 6.61253 6.65431 6.81300 6.84862 7.02380 7.31704 7.72868 8.04107 8.38139 8.86395 9.11005 9.83201 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.036878 B = 0.003681 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.074776 B = 7604.429183 C = 8266.927724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.046 3.954 3 Si 0.948 3.052 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.124 0.876 9 N -0.338 5.338 10 C 0.365 3.635 11 N -0.544 5.544 12 C 0.105 3.895 13 S 0.137 5.863 14 C -0.209 4.209 15 C 0.017 3.983 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.021 4.021 22 C -0.278 4.278 23 C 0.517 3.483 24 O -0.554 6.554 25 H 0.292 0.708 26 H 0.208 0.792 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -10.996 -2.501 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.166 4.166 3 Si 0.771 3.229 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.142 0.858 9 N -0.035 5.035 10 C 0.082 3.918 11 N -0.271 5.271 12 C -0.139 4.139 13 S 0.397 5.603 14 C -0.325 4.325 15 C 0.015 3.985 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.154 4.154 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.051 4.051 22 C -0.294 4.294 23 C 0.315 3.685 24 O -0.435 6.435 25 H 0.103 0.897 26 H 0.224 0.776 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.664 -11.396 -3.371 12.179 hybrid contribution 1.837 1.317 1.582 2.759 sum -0.827 -10.079 -1.789 10.270 Atomic orbital electron populations 1.69767 1.06638 1.30562 1.39750 1.25793 0.95741 1.01471 0.93572 0.85512 0.80129 0.78424 0.78845 1.18149 1.19232 1.19615 1.20351 0.97626 0.82053 1.45913 0.85798 1.42736 1.23978 1.08595 1.28174 1.25008 0.84641 0.97341 0.84768 1.67882 1.32010 0.95524 1.31655 1.23786 0.95809 0.97422 0.96868 1.83423 1.35582 0.94121 1.47173 1.21995 1.05434 0.95451 1.09615 1.18056 0.95289 0.89225 0.95968 1.21231 0.98479 0.95457 0.98370 1.21033 0.99064 0.93217 0.99718 1.21123 0.96455 0.99513 0.98288 1.20991 0.98672 0.94925 0.98443 1.21175 0.99191 0.93376 1.00481 1.19569 0.97800 0.90010 0.97675 1.19514 1.05214 0.95057 1.09578 1.16917 0.85877 0.83100 0.82567 1.90722 1.30481 1.86356 1.35953 0.89678 0.77567 0.85658 0.86023 0.86343 0.86076 0.86083 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.31 11.19 55.50 0.62 -18.69 16 2 C 0.05 1.04 4.98 -17.49 -0.09 0.95 16 3 Si 0.95 17.21 29.59 -169.99 -5.03 12.18 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.65 7.11 56.52 0.40 -4.25 16 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.33 -8.22 9.10 -14.87 -0.14 -8.35 16 8 H 0.12 3.13 7.57 -52.48 -0.40 2.74 16 9 N -0.34 -8.57 2.74 -65.18 -0.18 -8.75 16 10 C 0.37 8.56 10.29 -89.76 -0.92 7.63 16 11 N -0.54 -12.44 10.41 -12.45 -0.13 -12.57 16 12 C 0.10 2.33 7.70 -15.77 -0.12 2.20 16 13 S 0.14 2.45 22.13 -107.50 -2.38 0.07 16 14 C -0.21 -3.75 6.30 -37.29 -0.23 -3.99 16 15 C 0.02 0.26 5.87 -104.98 -0.62 -0.36 16 16 C -0.12 -1.61 9.53 -39.18 -0.37 -1.99 16 17 C -0.11 -1.30 10.03 -39.64 -0.40 -1.70 16 18 C -0.14 -1.46 10.04 -39.49 -0.40 -1.86 16 19 C -0.11 -1.27 10.03 -39.64 -0.40 -1.67 16 20 C -0.12 -1.66 9.59 -39.18 -0.38 -2.04 16 21 C -0.02 -0.42 9.49 -40.50 -0.38 -0.80 16 22 C -0.28 -6.51 5.91 -106.80 -0.63 -7.14 16 23 C 0.52 13.52 7.47 -14.36 -0.11 13.42 16 24 O -0.55 -15.57 16.82 5.06 0.09 -15.48 16 25 H 0.29 6.09 8.31 -40.82 -0.34 5.75 16 26 H 0.21 4.60 6.15 -52.49 -0.32 4.28 16 27 H 0.13 1.68 6.68 -52.49 -0.35 1.33 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.52 7.24 -52.49 -0.38 1.14 16 32 H 0.14 2.61 6.78 -52.49 -0.36 2.25 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -28.26 297.43 -9.92 -38.19 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -2.21 Total: 6.26 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -5.18 Total: -5.69 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.31 Total: -40.01 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.38 Total: 0.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.26 -9.92 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000616261.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.294 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds