Wall clock time and date at job start Tue Mar 31 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00275 * 2 1 4 4 O 1.20824 * 120.00287 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00200 * 179.97438 * 3 2 1 6 6 C 1.50704 * 109.47129 * 180.02562 * 5 3 2 7 7 C 1.36503 * 119.93970 * 95.00067 * 6 5 3 8 8 C 1.40586 * 118.92372 * 180.02562 * 7 6 5 9 9 O 1.22011 * 120.63328 * 179.97438 * 8 7 6 10 10 N 1.35017 * 118.73514 * 359.97438 * 8 7 6 11 11 H 0.96998 * 120.12520 * 179.97438 * 10 8 7 12 12 C 1.36190 * 119.75803 * 359.97438 * 10 8 7 13 13 S 1.76193 * 119.44594 * 179.97438 * 12 10 8 14 14 C 1.81002 * 100.00049 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47004 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99711 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00219 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46794 * 90.00022 * 20 18 16 22 22 H 1.48502 * 109.47140 * 210.00005 * 20 18 16 23 23 H 1.48501 * 109.46982 * 330.00118 * 20 18 16 24 24 N 1.31920 * 121.10638 * 0.25944 * 12 10 8 25 25 H 1.09000 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47126 * 300.00277 * 1 2 3 27 27 H 1.09009 * 109.46633 * 60.00043 * 1 2 3 28 28 H 1.08993 * 109.47014 * 60.00399 * 5 3 2 29 29 H 1.08996 * 109.46968 * 300.00040 * 5 3 2 30 30 H 1.08003 * 120.53694 * 0.02562 * 7 6 5 31 31 H 1.09002 * 109.47115 * 60.00094 * 14 13 12 32 32 H 1.09001 * 109.46925 * 300.00251 * 14 13 12 33 33 H 1.09001 * 109.47194 * 299.99731 * 15 14 13 34 34 H 1.08992 * 109.47399 * 59.99903 * 15 14 13 35 35 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 3.9937 2.7199 0.0011 7 6 4.2853 3.3437 1.1797 8 6 4.6813 4.6924 1.1554 9 8 4.9488 5.2806 2.1904 10 7 4.7599 5.3245 -0.0351 11 1 5.0306 6.2551 -0.0752 12 6 4.4578 4.6507 -1.1794 13 16 4.5625 5.4838 -2.7284 14 6 4.0665 4.1441 -3.8399 15 6 4.0841 4.6473 -5.2847 16 6 3.6705 3.5320 -6.2101 17 1 3.4205 2.5614 -5.8079 18 6 3.6112 3.7509 -7.5701 19 7 3.2508 2.7775 -8.3777 20 14 4.0429 5.4301 -8.2656 21 1 5.4951 5.4805 -8.5716 22 1 3.2664 5.6652 -9.5094 23 1 3.7103 6.4792 -7.2686 24 7 4.0826 3.3864 -1.1470 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7808 0.8908 30 1 4.2130 2.8098 2.1157 31 1 3.0606 3.8122 -3.5827 32 1 4.7615 3.3107 -3.7373 33 1 3.3893 5.4808 -5.3877 34 1 5.0900 4.9789 -5.5417 35 1 3.2087 2.9317 -9.3344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006653979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:21 Heat of formation + Delta-G solvation = -91.067611 kcal Electronic energy + Delta-G solvation = -21057.837421 eV Core-core repulsion = 17568.625713 eV Total energy + Delta-G solvation = -3489.211708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.63580 -40.50787 -37.78886 -36.68274 -35.03978 -33.92176 -32.02817 -31.32051 -29.98290 -27.57554 -25.90819 -24.97009 -23.42757 -21.33402 -20.82496 -19.01533 -18.40861 -17.89432 -17.65122 -17.09471 -16.70380 -16.59813 -15.92912 -15.34583 -14.58702 -14.41941 -14.24553 -13.91615 -13.80079 -13.67527 -13.29757 -13.07176 -12.86186 -12.41945 -12.23524 -11.98549 -11.33942 -11.14548 -10.97273 -10.83101 -10.61601 -10.52921 -10.37046 -10.24012 -10.17218 -9.86261 -9.40876 -9.03586 -8.70260 -7.81950 -6.19984 -4.21461 0.30574 0.91746 1.61843 2.04258 2.19918 2.51816 2.84016 3.20854 3.29544 3.30570 3.47528 3.82664 4.30771 4.34939 4.62565 4.79927 4.94103 4.98455 5.05082 5.12824 5.16406 5.36515 5.37833 5.68722 5.72591 5.80665 6.16277 6.21528 6.32177 6.35348 6.88346 6.99327 7.48280 7.51222 7.55185 7.72545 8.32019 8.82346 9.39033 10.92461 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004410 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.957231 B = 6347.629853 C = 8232.929550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.495 6.495 5 C -0.067 4.067 6 C 0.212 3.788 7 C -0.295 4.295 8 C 0.534 3.466 9 O -0.546 6.546 10 N -0.618 5.618 11 H 0.420 0.580 12 C 0.382 3.618 13 S -0.029 6.029 14 C -0.063 4.063 15 C -0.002 4.002 16 C -0.520 4.520 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.264 1.264 24 N -0.532 5.532 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -2.458 16.212 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.381 6.381 5 C -0.105 4.105 6 C 0.086 3.914 7 C -0.324 4.324 8 C 0.333 3.667 9 O -0.426 6.426 10 N -0.260 5.260 11 H 0.259 0.741 12 C 0.011 3.989 13 S 0.209 5.791 14 C -0.211 4.211 15 C -0.042 4.042 16 C -0.560 4.560 17 H 0.096 0.904 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.703 3.297 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.189 1.189 24 N -0.260 5.260 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.172 0.828 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.251 -1.332 15.794 15.852 hybrid contribution -0.116 0.344 0.476 0.599 sum 0.135 -0.988 16.270 16.301 Atomic orbital electron populations 1.23298 0.75832 1.03795 1.02802 1.86466 1.23789 1.32950 1.84268 1.23182 0.91232 0.81661 0.72837 1.90732 1.66955 1.36243 1.44146 1.20231 0.89145 0.93008 1.08154 1.20294 0.88529 0.94128 0.88431 1.22460 1.14675 0.95001 1.00227 1.16996 0.79145 0.88388 0.82221 1.90980 1.52499 1.68726 1.30395 1.44761 1.57690 1.16633 1.06903 0.74064 1.25579 0.89197 0.91370 0.92775 1.86144 1.81207 1.20589 0.91179 1.23922 1.05779 0.95465 0.95963 1.19501 0.97767 0.98364 0.88558 1.20839 1.47010 0.97653 0.90527 0.90392 1.24946 0.94320 0.96788 0.96864 1.69881 1.47319 1.32126 1.03934 0.86827 0.78940 0.84933 0.78963 1.19994 1.21068 1.18900 1.68717 1.24470 1.04565 1.28267 0.87934 0.91934 0.91504 0.84766 0.85291 0.82833 0.88359 0.88336 0.95396 0.95795 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -3.88 10.56 -39.23 -0.41 -4.29 16 3 C 0.47 5.80 7.95 36.01 0.29 6.09 16 4 O -0.49 -7.90 15.78 -18.75 -0.30 -8.19 16 5 C -0.07 -0.66 6.14 -29.03 -0.18 -0.84 16 6 C 0.21 2.76 5.26 -82.69 -0.44 2.33 16 7 C -0.30 -3.89 9.65 -39.32 -0.38 -4.26 16 8 C 0.53 7.99 7.74 -15.27 -0.12 7.87 16 9 O -0.55 -9.63 17.97 4.91 0.09 -9.54 16 10 N -0.62 -8.09 5.32 -14.79 -0.08 -8.17 16 11 H 0.42 4.51 8.82 -40.82 -0.36 4.14 16 12 C 0.38 5.40 7.96 -88.12 -0.70 4.70 16 13 S -0.03 -0.41 22.19 -107.50 -2.39 -2.80 16 14 C -0.06 -1.12 4.76 37.16 0.18 -0.95 16 15 C 0.00 -0.04 4.04 -27.88 -0.11 -0.16 16 16 C -0.52 -13.69 9.66 -34.44 -0.33 -14.02 16 17 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 20 Si 0.88 20.28 27.47 -169.99 -4.67 15.61 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 24 N -0.53 -7.89 9.06 -9.32 -0.08 -7.97 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.13 0.78 8.04 -51.93 -0.42 0.36 16 30 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 31 H 0.10 1.82 8.11 -51.92 -0.42 1.40 16 32 H 0.10 1.73 8.12 -51.92 -0.42 1.31 16 33 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 34 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -33.41 327.02 -7.05 -40.46 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.09 Total: 1.26 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.83 Total: 4.05 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.61 Total: -41.49 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.62 Total: -22.03 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.39 Total: -2.80 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.41 -7.05 -40.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006653979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.607 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds