Wall clock time and date at job start Tue Mar 31 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34221 * 117.00275 * 2 1 4 4 O 1.20824 * 120.00287 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00200 * 179.97438 * 3 2 1 6 6 C 1.50704 * 109.47129 * 180.02562 * 5 3 2 7 7 C 1.36503 * 119.93970 * 95.00067 * 6 5 3 8 8 C 1.40586 * 118.92372 * 180.02562 * 7 6 5 9 9 O 1.22011 * 120.63328 * 179.97438 * 8 7 6 10 10 N 1.35017 * 118.73514 * 359.97438 * 8 7 6 11 11 H 0.96998 * 120.12520 * 179.97438 * 10 8 7 12 12 C 1.36190 * 119.75803 * 359.97438 * 10 8 7 13 13 S 1.76193 * 119.44594 * 179.97438 * 12 10 8 14 14 C 1.81002 * 100.00049 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47004 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99711 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00219 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46794 * 90.00022 * 20 18 16 22 22 H 1.48502 * 109.47140 * 210.00005 * 20 18 16 23 23 H 1.48501 * 109.46982 * 330.00118 * 20 18 16 24 24 N 1.31920 * 121.10638 * 0.25944 * 12 10 8 25 25 H 1.09000 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47126 * 300.00277 * 1 2 3 27 27 H 1.09009 * 109.46633 * 60.00043 * 1 2 3 28 28 H 1.08993 * 109.47014 * 60.00399 * 5 3 2 29 29 H 1.08996 * 109.46968 * 300.00040 * 5 3 2 30 30 H 1.08003 * 120.53694 * 0.02562 * 7 6 5 31 31 H 1.09002 * 109.47115 * 60.00094 * 14 13 12 32 32 H 1.09001 * 109.46925 * 300.00251 * 14 13 12 33 33 H 1.09001 * 109.47194 * 299.99731 * 15 14 13 34 34 H 1.08992 * 109.47399 * 59.99903 * 15 14 13 35 35 H 0.97000 * 119.99684 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 3.9937 2.7199 0.0011 7 6 4.2853 3.3437 1.1797 8 6 4.6813 4.6924 1.1554 9 8 4.9488 5.2806 2.1904 10 7 4.7599 5.3245 -0.0351 11 1 5.0306 6.2551 -0.0752 12 6 4.4578 4.6507 -1.1794 13 16 4.5625 5.4838 -2.7284 14 6 4.0665 4.1441 -3.8399 15 6 4.0841 4.6473 -5.2847 16 6 3.6705 3.5320 -6.2101 17 1 3.4205 2.5614 -5.8079 18 6 3.6112 3.7509 -7.5701 19 7 3.2508 2.7775 -8.3777 20 14 4.0429 5.4301 -8.2656 21 1 5.4951 5.4805 -8.5716 22 1 3.2664 5.6652 -9.5094 23 1 3.7103 6.4792 -7.2686 24 7 4.0826 3.3864 -1.1470 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7808 0.8908 30 1 4.2130 2.8098 2.1157 31 1 3.0606 3.8122 -3.5827 32 1 4.7615 3.3107 -3.7373 33 1 3.3893 5.4808 -5.3877 34 1 5.0900 4.9789 -5.5417 35 1 3.2087 2.9317 -9.3344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006653979.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:21 Heat of formation + Delta-G solvation = -113.572667 kcal Electronic energy + Delta-G solvation = -21058.813314 eV Core-core repulsion = 17568.625713 eV Total energy + Delta-G solvation = -3490.187600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.72775 -41.46453 -38.94032 -37.64591 -36.11837 -35.75141 -33.44732 -32.86382 -30.94105 -28.35357 -27.65427 -26.16672 -24.48702 -22.88055 -21.94251 -20.15698 -19.51008 -19.13005 -18.82518 -18.68805 -17.65725 -17.50978 -17.04745 -16.52346 -16.39515 -15.75476 -15.38279 -15.22814 -14.78452 -14.70465 -14.58805 -14.40112 -14.24304 -13.70579 -13.23022 -13.06289 -12.97430 -12.29866 -12.24351 -12.17170 -11.96798 -11.83426 -11.70526 -11.60957 -11.46317 -11.35187 -11.25997 -10.76614 -10.18861 -8.95797 -8.28424 -6.34531 -0.76218 -0.26188 0.49687 0.87834 1.10771 1.40273 1.42296 1.52292 1.65623 1.75041 2.37253 2.41934 2.88018 3.07158 3.33517 3.73987 3.92507 4.12628 4.21615 4.23626 4.29814 4.31826 4.42121 4.43965 4.69742 4.74769 4.78784 5.18181 5.22589 5.25003 5.28743 5.32696 5.56065 6.23608 6.40341 6.60178 6.63442 6.72625 7.29632 8.87555 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.004410 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.957231 B = 6347.629853 C = 8232.929550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.469 3.531 4 O -0.539 6.539 5 C -0.064 4.064 6 C 0.207 3.793 7 C -0.294 4.294 8 C 0.527 3.473 9 O -0.579 6.579 10 N -0.606 5.606 11 H 0.430 0.570 12 C 0.372 3.628 13 S 0.022 5.978 14 C -0.065 4.065 15 C 0.000 4.000 16 C -0.527 4.527 17 H 0.040 0.960 18 C 0.012 3.988 19 N -0.946 5.946 20 Si 0.943 3.057 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.243 1.243 24 N -0.549 5.549 25 H 0.135 0.865 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.147 0.853 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -1.715 17.249 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.313 3.687 4 O -0.428 6.428 5 C -0.102 4.102 6 C 0.081 3.919 7 C -0.322 4.322 8 C 0.326 3.674 9 O -0.461 6.461 10 N -0.249 5.249 11 H 0.272 0.728 12 C 0.001 3.999 13 S 0.260 5.740 14 C -0.214 4.214 15 C -0.039 4.039 16 C -0.566 4.566 17 H 0.058 0.942 18 C -0.186 4.186 19 N -0.586 5.586 20 Si 0.766 3.234 21 H -0.188 1.188 22 H -0.213 1.213 23 H -0.166 1.166 24 N -0.277 5.277 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.165 0.835 29 H 0.190 0.810 30 H 0.193 0.807 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.089 -0.601 16.837 16.883 hybrid contribution -0.430 -0.005 0.238 0.492 sum 0.659 -0.607 17.075 17.099 Atomic orbital electron populations 1.23543 0.74745 1.05803 1.02285 1.86470 1.24917 1.32139 1.83714 1.23673 0.92147 0.81370 0.71477 1.90717 1.68067 1.37602 1.46429 1.20439 0.87442 0.91409 1.10886 1.20700 0.87959 0.95468 0.87728 1.22692 1.13860 0.94355 1.01301 1.17284 0.78997 0.89044 0.82058 1.90966 1.54284 1.69521 1.31377 1.44605 1.56882 1.17122 1.06242 0.72847 1.25551 0.89819 0.91584 0.92944 1.85799 1.80987 1.17440 0.89817 1.23531 1.05346 0.97102 0.95442 1.19350 0.98111 0.96639 0.89812 1.21175 1.46081 0.97774 0.91612 0.94164 1.25899 0.94352 1.00958 0.97379 1.70040 1.49475 1.34768 1.04338 0.85766 0.79048 0.80223 0.78360 1.18842 1.21278 1.16588 1.68729 1.24403 1.05002 1.29603 0.84689 0.91655 0.92883 0.83481 0.80970 0.80667 0.89678 0.88481 0.94930 0.94520 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -7.20 10.56 -51.33 -0.54 -7.75 16 3 C 0.47 11.04 7.95 71.24 0.57 11.60 16 4 O -0.54 -17.05 15.78 21.97 0.35 -16.70 16 5 C -0.06 -1.11 6.14 29.11 0.18 -0.93 16 6 C 0.21 5.02 5.26 41.97 0.22 5.25 16 7 C -0.29 -7.19 9.65 22.44 0.22 -6.97 16 8 C 0.53 15.04 7.74 84.78 0.66 15.69 16 9 O -0.58 -19.88 17.97 -5.35 -0.10 -19.98 16 10 N -0.61 -14.95 5.32 -318.66 -1.69 -16.64 16 11 H 0.43 8.51 8.82 -92.71 -0.82 7.69 16 12 C 0.37 9.95 7.96 179.48 1.43 11.38 16 13 S 0.02 0.59 22.19 -56.49 -1.25 -0.67 16 14 C -0.07 -2.28 4.76 71.98 0.34 -1.93 16 15 C 0.00 0.02 4.04 29.85 0.12 0.14 16 16 C -0.53 -28.13 9.66 25.60 0.25 -27.88 16 17 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 18 C 0.01 0.67 5.47 84.66 0.46 1.13 16 19 N -0.95 -56.68 13.96 21.45 0.30 -56.38 16 20 Si 0.94 41.13 27.47 68.60 1.88 43.01 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 24 N -0.55 -15.58 9.06 -183.39 -1.66 -17.24 16 25 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 27 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.17 1.43 8.04 -2.39 -0.02 1.41 16 30 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.08 3.17 8.11 -2.39 -0.02 3.15 16 32 H 0.10 3.37 8.12 -2.39 -0.02 3.35 16 33 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 34 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -73.73 327.02 3.18 -70.55 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.26 Total: 12.65 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.64 Total: 9.14 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.06 Total: -90.26 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.29 Total: -44.43 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.01 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.25 Total: -0.67 kcal Total: -73.73 3.18 -70.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006653979.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.025 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds