Wall clock time and date at job start Tue Mar 31 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48502 * 109.46955 * 240.00114 * 3 2 1 5 5 H 1.48495 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46805 * 119.99808 * 3 2 1 7 7 C 1.39883 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99564 * 197.63082 * 7 2 1 9 9 C 1.41137 * 120.00140 * 17.62174 * 7 2 1 10 10 C 1.40879 * 120.15845 * 208.26926 * 9 7 2 11 11 C 1.36355 * 119.83169 * 180.02562 * 10 9 7 12 12 C 1.39520 * 120.16384 * 0.02562 * 11 10 9 13 13 N 1.39132 * 119.83712 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99759 * 136.27532 * 13 12 11 15 15 S 1.71196 * 120.00350 * 3.22357 * 14 13 12 16 16 N 1.34780 * 119.99620 * 183.21951 * 14 13 12 17 17 C 1.39873 * 119.99749 * 183.91606 * 16 14 13 18 18 C 1.38888 * 120.07312 * 316.06274 * 17 16 14 19 19 C 1.38104 * 119.92639 * 179.79035 * 18 17 16 20 20 C 1.38287 * 120.07307 * 0.46573 * 19 18 17 21 21 C 1.38281 * 120.14271 * 359.79030 * 20 19 18 22 22 C 1.38113 * 120.07426 * 359.97438 * 21 20 19 23 23 C 1.39509 * 120.32558 * 0.26871 * 12 11 10 24 24 C 1.36355 * 120.16760 * 359.44774 * 23 12 11 25 25 H 0.97003 * 120.00491 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08786 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.92060 * 179.97438 * 11 10 9 28 28 H 0.96998 * 119.99783 * 316.00189 * 13 12 11 29 29 H 0.96996 * 119.99836 * 3.92046 * 16 14 13 30 30 H 1.07997 * 120.03659 * 0.02921 * 18 17 16 31 31 H 1.07997 * 119.96503 * 180.23520 * 19 18 17 32 32 H 1.08002 * 119.93115 * 179.76421 * 20 19 18 33 33 H 1.08000 * 119.96469 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.03943 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.91644 * 179.70621 * 23 12 11 36 36 H 1.08000 * 120.08814 * 180.24289 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0503 -1.2335 0.2828 9 6 1.3523 -2.4049 -0.3711 10 6 1.7793 -3.6400 0.1550 11 6 1.1411 -4.7890 -0.2079 12 6 0.0680 -4.7435 -1.0984 13 7 -0.5781 -5.9201 -1.4645 14 6 -1.9242 -5.9618 -1.5160 15 16 -2.8368 -4.5457 -1.2117 16 7 -2.5519 -7.1184 -1.8073 17 6 -3.9439 -7.1441 -1.9416 18 6 -4.7439 -6.4725 -1.0262 19 6 -6.1178 -6.4962 -1.1642 20 6 -6.6976 -7.1956 -2.2067 21 6 -5.9041 -7.8697 -3.1168 22 6 -4.5293 -7.8460 -2.9873 23 6 -0.3566 -3.5248 -1.6282 24 6 0.2682 -2.3670 -1.2700 25 1 -0.4851 0.8400 -0.0004 26 1 2.6102 -3.6768 0.8441 27 1 1.4676 -5.7367 0.1942 28 1 -0.0595 -6.7092 -1.6864 29 1 -2.0382 -7.9329 -1.9238 30 1 -4.2919 -5.9291 -0.2097 31 1 -6.7403 -5.9710 -0.4549 32 1 -7.7725 -7.2158 -2.3102 33 1 -6.3600 -8.4154 -3.9297 34 1 -3.9102 -8.3730 -3.6981 35 1 -1.1850 -3.4978 -2.3206 36 1 -0.0640 -1.4238 -1.6779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018145473.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:03 Heat of formation + Delta-G solvation = 79.441213 kcal Electronic energy + Delta-G solvation = -20137.818101 eV Core-core repulsion = 17099.142225 eV Total energy + Delta-G solvation = -3038.675876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00464 -38.68880 -36.99017 -34.93953 -33.18665 -30.89450 -29.90171 -29.59678 -28.64177 -25.33887 -24.02321 -22.58394 -22.15506 -21.07580 -20.60439 -18.25422 -18.12808 -17.37076 -16.51754 -15.82496 -15.33527 -15.27925 -14.97302 -14.11288 -14.04118 -13.86721 -13.36347 -13.09783 -12.75092 -12.50628 -12.17557 -11.87344 -11.59228 -11.52067 -11.17664 -11.10978 -10.93655 -10.69242 -10.53554 -10.18086 -9.84813 -9.46553 -9.16620 -8.89519 -8.36689 -7.68640 -7.40366 -7.11739 -6.82491 -6.07454 -4.38915 1.11800 1.53223 1.78483 2.34586 2.75171 2.96137 3.06192 3.07702 3.10094 3.22156 3.80734 3.89861 3.92908 4.57838 4.91292 5.00886 5.20042 5.44838 5.54531 5.63342 5.71418 6.00991 6.06211 6.25368 6.32302 6.39463 6.51309 6.62830 6.70271 6.90763 6.99099 7.03165 7.14603 7.16210 7.29277 7.52382 7.60179 7.85331 8.00569 8.11815 8.22004 8.58563 8.81172 8.91064 10.13092 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.003411 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.903428 B = 8207.561827 C = 8900.344187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.125 3.875 10 C -0.225 4.225 11 C -0.077 4.077 12 C -0.050 4.050 13 N -0.580 5.580 14 C 0.529 3.471 15 S -0.607 6.607 16 N -0.646 5.646 17 C 0.132 3.868 18 C -0.068 4.068 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.035 4.035 24 C -0.166 4.166 25 H 0.285 0.715 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.391 0.609 29 H 0.400 0.600 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 -13.819 -4.497 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.122 3.878 10 C -0.245 4.245 11 C -0.097 4.097 12 C -0.143 4.143 13 N -0.197 5.197 14 C 0.173 3.827 15 S -0.471 6.471 16 N -0.274 5.274 17 C 0.039 3.961 18 C -0.092 4.092 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.151 4.151 23 C -0.057 4.057 24 C -0.187 4.187 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.227 0.773 29 H 0.237 0.763 30 H 0.170 0.830 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.955 -12.551 -4.236 14.961 hybrid contribution 1.288 -0.738 -0.271 1.509 sum -5.667 -13.289 -4.507 15.134 Atomic orbital electron populations 1.69874 1.07532 1.29815 1.32385 1.25974 0.94760 1.01421 0.92412 0.86357 0.80172 0.80188 0.80001 1.18718 1.20201 1.18962 1.19586 0.98103 0.91352 1.39323 0.90191 1.17720 0.90397 0.91939 0.87775 1.20510 1.05077 0.92547 1.06368 1.20017 0.96333 0.97193 0.96206 1.16922 1.02520 0.83783 1.11047 1.41955 1.02129 1.14516 1.61071 1.22570 0.86375 0.90717 0.83036 1.93325 1.61519 1.21888 1.70382 1.42073 1.06288 1.08288 1.70734 1.17388 0.80406 1.02139 0.96199 1.21764 0.93151 0.94972 0.99265 1.21010 0.94321 0.99665 0.98815 1.21149 0.99638 0.97730 0.95401 1.20778 0.92742 1.01055 0.99792 1.20861 0.95530 1.02386 0.96292 1.20690 0.96022 0.91072 0.97925 1.20776 1.00086 0.96512 1.01314 0.90411 0.88489 0.89459 0.77266 0.76272 0.82971 0.85792 0.86320 0.86110 0.86345 0.86479 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.20 11.20 55.54 0.62 -19.57 16 2 C 0.07 1.86 5.10 -17.34 -0.09 1.77 16 3 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.46 -11.75 9.02 -37.87 -0.34 -12.09 16 8 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 9 C 0.12 3.25 5.53 -106.80 -0.59 2.66 16 10 C -0.22 -5.29 9.74 -39.26 -0.38 -5.67 16 11 C -0.08 -1.63 9.90 -39.78 -0.39 -2.02 16 12 C -0.05 -1.06 5.97 -83.60 -0.50 -1.56 16 13 N -0.58 -9.64 5.28 -11.28 -0.06 -9.70 16 14 C 0.53 9.14 7.70 -86.92 -0.67 8.48 16 15 S -0.61 -13.46 21.68 -107.50 -2.33 -15.79 16 16 N -0.65 -8.40 5.32 -11.40 -0.06 -8.46 16 17 C 0.13 1.81 5.97 -83.71 -0.50 1.31 16 18 C -0.07 -1.01 7.87 -39.39 -0.31 -1.32 16 19 C -0.12 -1.49 10.04 -39.61 -0.40 -1.89 16 20 C -0.12 -1.31 10.04 -39.55 -0.40 -1.70 16 21 C -0.12 -1.30 10.04 -39.61 -0.40 -1.69 16 22 C -0.13 -1.47 9.97 -39.39 -0.39 -1.86 16 23 C -0.04 -0.84 7.77 -39.79 -0.31 -1.15 16 24 C -0.17 -4.34 8.61 -39.26 -0.34 -4.68 16 25 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 26 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 27 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.39 4.81 8.84 -40.82 -0.36 4.45 16 29 H 0.40 3.62 8.85 -40.82 -0.36 3.26 16 30 H 0.15 2.64 5.96 -40.79 -0.24 2.40 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 2.88 5.98 -41.21 -0.25 2.63 16 36 H 0.12 3.15 6.44 -52.49 -0.34 2.81 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -30.81 318.28 -11.71 -42.52 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -3.64 Total: 14.32 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -6.01 Total: -21.43 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.50 Total: -37.74 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: -13.46 SS G_CDS: -2.33 Total: -15.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.81 -11.71 -42.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018145473.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.960 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds