Wall clock time and date at job start Tue Mar 31 2020 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 110.54678 * 2 1 4 4 O 1.42100 * 110.54221 * 223.24597 * 2 1 3 5 5 C 1.76204 * 104.44777 * 111.62556 * 2 1 3 6 6 C 1.38283 * 119.92589 * 89.99688 * 5 2 1 7 7 C 1.38101 * 120.07597 * 180.02562 * 6 5 2 8 8 C 1.38912 * 119.92565 * 0.02562 * 7 6 5 9 9 N 1.39673 * 120.07315 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99605 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46928 * 180.02562 * 10 9 8 12 12 O 1.21297 * 119.99980 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 179.97438 * 11 10 9 14 14 C 1.37097 * 119.99944 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00055 * 0.02562 * 14 13 11 16 16 C 1.38948 * 119.99682 * 180.02562 * 14 13 11 17 17 N 1.31416 * 120.00213 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99894 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46950 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47074 * 120.00029 * 18 16 14 21 21 H 1.48505 * 109.46997 * 240.00023 * 18 16 14 22 22 C 1.38914 * 119.84917 * 0.25534 * 8 7 6 23 23 C 1.38106 * 119.92380 * 359.48549 * 22 8 7 24 24 H 1.08999 * 109.47209 * 308.37970 * 1 2 3 25 25 H 1.09000 * 109.47153 * 68.37206 * 1 2 3 26 26 H 1.08995 * 109.47146 * 188.37251 * 1 2 3 27 27 H 1.08009 * 119.96048 * 0.04630 * 6 5 2 28 28 H 1.08005 * 120.03673 * 179.97438 * 7 6 5 29 29 H 0.96999 * 120.00315 * 0.02562 * 9 8 7 30 30 H 1.09004 * 109.47073 * 299.99891 * 10 9 8 31 31 H 1.09000 * 109.47212 * 59.99974 * 10 9 8 32 32 H 0.96996 * 119.99844 * 0.02562 * 13 11 10 33 33 H 0.97002 * 120.00016 * 180.02562 * 17 16 14 34 34 H 1.07998 * 120.03713 * 179.72784 * 22 8 7 35 35 H 1.07994 * 119.96460 * 180.25714 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4257 -1.9892 1.7656 7 6 2.7697 -2.4854 3.0076 8 6 2.9424 -1.6165 4.0775 9 7 3.2899 -2.1151 5.3351 10 6 3.4710 -1.1972 6.4625 11 6 3.8404 -1.9820 7.6948 12 8 3.9419 -3.1893 7.6372 13 7 4.0581 -1.3423 8.8610 14 6 4.3936 -2.0564 9.9822 15 1 4.4839 -3.1314 9.9309 16 6 4.6174 -1.3969 11.1846 17 7 4.5070 -0.0889 11.2471 18 14 5.0753 -2.3697 12.7122 19 1 5.1337 -3.8157 12.3791 20 1 6.4021 -1.9209 13.2056 21 1 4.0535 -2.1459 13.7663 22 6 2.7631 -0.2511 3.8952 23 6 2.4243 0.2390 2.6493 24 1 -0.3633 0.6380 0.8056 25 1 -0.3633 0.3788 -0.9553 26 1 -0.3633 -1.0167 0.1496 27 1 2.2912 -2.6642 0.9333 28 1 2.9035 -3.5480 3.1470 29 1 3.4112 -3.0691 5.4620 30 1 4.2671 -0.4896 6.2306 31 1 2.5431 -0.6542 6.6416 32 1 3.9766 -0.3769 8.9072 33 1 4.6637 0.3715 12.0865 34 1 2.8923 0.4268 4.7260 35 1 2.2888 1.3008 2.5058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020049987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:34 Heat of formation + Delta-G solvation = -105.729548 kcal Electronic energy + Delta-G solvation = -20681.096265 eV Core-core repulsion = 17191.248768 eV Total energy + Delta-G solvation = -3489.847497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78085 -39.93274 -37.99440 -36.87338 -36.59354 -35.86597 -33.42504 -32.02319 -31.17878 -30.13776 -28.38732 -26.32783 -23.92602 -23.02844 -21.24579 -20.07515 -19.86198 -19.04114 -18.35769 -17.28304 -17.10753 -16.96874 -16.58397 -16.43470 -16.24527 -15.69148 -15.42474 -14.91600 -14.63696 -14.38635 -14.15419 -13.95390 -13.83290 -13.78802 -13.55541 -13.48680 -13.01532 -12.95616 -12.91027 -12.48668 -12.14826 -12.03064 -11.99483 -11.62296 -11.50296 -11.37119 -10.59923 -10.13189 -9.98802 -8.70191 -8.55082 -6.04880 -0.67211 0.16605 0.44951 1.32232 1.40802 1.53975 1.87672 2.07564 2.15850 2.33840 2.61340 3.09694 3.12379 3.20472 3.35132 3.85426 4.00250 4.12985 4.20827 4.27042 4.33862 4.40979 4.41339 4.58280 4.69551 4.99606 5.05568 5.10489 5.26461 5.28352 5.34873 5.75841 5.88529 6.18990 6.45851 6.58299 7.01117 7.40802 7.92614 8.61807 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.046821 B = 0.002453 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.884568 B =11409.573283 C =11787.652341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.517 3.483 3 O -0.983 6.983 4 O -0.983 6.983 5 C -0.728 4.728 6 C 0.017 3.983 7 C -0.228 4.228 8 C 0.257 3.743 9 N -0.723 5.723 10 C 0.121 3.879 11 C 0.428 3.572 12 O -0.631 6.631 13 N -0.558 5.558 14 C -0.338 4.338 15 H 0.082 0.918 16 C -0.008 4.008 17 N -0.913 5.913 18 Si 0.994 3.006 19 H -0.273 1.273 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.232 4.232 23 C 0.018 3.982 24 H 0.150 0.850 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.136 0.864 29 H 0.408 0.592 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.401 0.599 33 H 0.280 0.720 34 H 0.141 0.859 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 3.361 -18.694 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.702 3.298 3 O -0.981 6.981 4 O -0.981 6.981 5 C -0.818 4.818 6 C -0.003 4.003 7 C -0.252 4.252 8 C 0.149 3.851 9 N -0.350 5.350 10 C -0.006 4.006 11 C 0.216 3.784 12 O -0.519 6.519 13 N -0.194 5.194 14 C -0.467 4.467 15 H 0.100 0.900 16 C -0.209 4.209 17 N -0.553 5.553 18 Si 0.817 3.183 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.256 4.256 23 C -0.002 4.002 24 H 0.169 0.831 25 H 0.168 0.832 26 H 0.169 0.831 27 H 0.173 0.827 28 H 0.154 0.846 29 H 0.246 0.754 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.360 3.100 -18.987 21.394 hybrid contribution 0.112 -0.646 1.903 2.013 sum -9.248 2.453 -17.084 19.581 Atomic orbital electron populations 1.30055 1.20393 1.14026 1.13673 1.04363 0.79542 0.72822 0.73117 1.93513 1.79661 1.38270 1.86608 1.93510 1.79674 1.62418 1.62482 1.30217 1.26531 1.02757 1.22262 1.20828 0.89316 0.93595 0.96516 1.20904 1.11459 1.00044 0.92751 1.18383 0.88342 0.93781 0.84621 1.44758 1.74055 1.10267 1.05916 1.20957 1.03453 0.92094 0.84145 1.20605 0.83811 0.88339 0.85694 1.90490 1.59487 1.16209 1.85744 1.41836 1.59849 1.10137 1.07593 1.19712 1.46258 0.93076 0.87694 0.90049 1.26068 0.96315 0.96794 1.01702 1.69661 1.48492 1.08100 1.29082 0.84859 0.78315 0.78007 0.77098 1.19764 1.19567 1.19461 1.21020 1.11533 0.93336 0.99696 1.20882 0.89026 0.99911 0.90346 0.83129 0.83155 0.83127 0.82689 0.84572 0.75432 0.88200 0.87759 0.76481 0.90991 0.84091 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.38 10.80 113.37 1.22 -2.16 16 2 S 2.52 40.51 5.80 -56.49 -0.33 40.18 16 3 O -0.98 -22.69 17.12 -127.65 -2.19 -24.88 16 4 O -0.98 -22.58 17.12 -127.65 -2.19 -24.76 16 5 C -0.73 -14.33 5.66 22.29 0.13 -14.21 16 6 C 0.02 0.35 9.46 22.25 0.21 0.56 16 7 C -0.23 -5.40 9.90 22.40 0.22 -5.18 16 8 C 0.26 6.78 6.65 38.22 0.25 7.03 16 9 N -0.72 -21.86 5.70 -343.11 -1.96 -23.81 16 10 C 0.12 3.81 5.39 85.63 0.46 4.27 16 11 C 0.43 18.90 7.85 87.66 0.69 19.58 16 12 O -0.63 -32.56 15.24 -3.08 -0.05 -32.61 16 13 N -0.56 -26.86 5.29 -306.98 -1.62 -28.49 16 14 C -0.34 -18.28 9.68 84.04 0.81 -17.47 16 15 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 16 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 17 N -0.91 -47.00 13.05 21.66 0.28 -46.71 16 18 Si 0.99 41.08 29.55 68.60 2.03 43.11 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 C -0.23 -5.45 9.31 22.40 0.21 -5.24 16 23 C 0.02 0.37 9.46 22.25 0.21 0.58 16 24 H 0.15 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.16 2.52 7.56 -2.91 -0.02 2.49 16 28 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.41 13.47 7.45 -92.71 -0.69 12.78 16 30 H 0.10 2.78 7.96 -2.38 -0.02 2.76 16 31 H 0.10 2.80 7.94 -2.39 -0.02 2.78 16 32 H 0.40 18.08 7.90 -92.71 -0.73 17.34 16 33 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.14 2.91 6.73 -2.91 -0.02 2.89 16 35 H 0.16 2.54 7.56 -2.91 -0.02 2.51 16 Total: -1.00 -74.69 320.92 -1.41 -76.09 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.28 Total: 34.04 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 4.89 Total: -12.15 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -3.30 Total: -99.01 kcal Atomic # 8 Polarization: -77.84 SS G_CDS: -4.42 Total: -82.25 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 40.51 SS G_CDS: -0.33 Total: 40.18 kcal Total: -74.69 -1.41 -76.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020049987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.635 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds