Wall clock time and date at job start Tue Mar 31 2020 03:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31269 * 1 3 3 Si 1.86795 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47368 * 239.99593 * 3 2 1 5 5 H 1.48500 * 109.47687 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99827 * 3 2 1 7 7 C 1.39056 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99736 * 162.33643 * 7 2 1 9 9 N 1.37095 * 120.00452 * 342.05569 * 7 2 1 10 10 C 1.36238 * 119.95979 * 331.52662 * 9 7 2 11 11 N 1.29736 * 122.03675 * 179.71456 * 10 9 7 12 12 C 1.36005 * 121.62776 * 0.58288 * 11 10 9 13 13 C 1.45167 * 130.06997 * 179.71410 * 12 11 10 14 14 C 1.48249 * 122.90971 * 359.94559 * 13 12 11 15 15 C 1.39415 * 120.12470 * 309.73142 * 14 13 12 16 16 C 1.38000 * 119.86633 * 179.74545 * 15 14 13 17 17 C 1.38327 * 120.12796 * 0.53971 * 16 15 14 18 18 C 1.38337 * 120.25976 * 359.73980 * 17 16 15 19 19 C 1.37987 * 120.12916 * 359.97438 * 18 17 16 20 20 C 1.33894 * 114.18011 * 179.97438 * 13 12 11 21 21 S 1.70145 * 112.01470 * 0.02562 * 20 13 12 22 22 C 1.38983 * 118.76272 * 359.68838 * 12 11 10 23 23 C 1.34888 * 119.96196 * 151.79432 * 9 7 2 24 24 O 1.21953 * 120.67045 * 359.96285 * 23 9 7 25 25 H 0.97005 * 119.99580 * 0.02562 * 1 2 3 26 26 H 1.08004 * 118.98240 * 359.97438 * 10 9 7 27 27 H 1.08009 * 120.06574 * 0.02790 * 15 14 13 28 28 H 1.08001 * 119.93272 * 180.27373 * 16 15 14 29 29 H 1.08006 * 119.86899 * 179.76174 * 17 16 15 30 30 H 1.08001 * 119.93406 * 180.02562 * 18 17 16 31 31 H 1.08003 * 120.06565 * 180.02562 * 19 18 17 32 32 H 1.07994 * 123.99036 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 3.1005 1.6964 -1.2124 5 1 1.2817 2.7465 -0.0006 6 1 3.1004 1.6964 1.2125 7 6 2.0079 -1.2043 0.0005 8 1 3.0498 -1.2265 -0.2833 9 7 1.3724 -2.3626 0.3668 10 6 0.3305 -2.3190 1.2435 11 7 -0.3028 -3.3891 1.6134 12 6 0.0474 -4.6201 1.1533 13 6 -0.5216 -5.9234 1.4449 14 6 -1.6657 -6.1145 2.3681 15 6 -1.6419 -5.5432 3.6395 16 6 -2.7121 -5.7201 4.4926 17 6 -3.8021 -6.4719 4.0925 18 6 -3.8287 -7.0461 2.8342 19 6 -2.7670 -6.8712 1.9703 20 6 0.0769 -6.9380 0.8083 21 16 1.3567 -6.4056 -0.1784 22 6 1.1072 -4.7236 0.2602 23 6 1.7830 -3.5445 -0.1370 24 8 2.7172 -3.5965 -0.9193 25 1 -0.4850 0.8401 -0.0004 26 1 0.0196 -1.3636 1.6397 27 1 -0.7895 -4.9594 3.9546 28 1 -2.6966 -5.2743 5.4762 29 1 -4.6357 -6.6109 4.7649 30 1 -4.6826 -7.6317 2.5270 31 1 -2.7891 -7.3195 0.9880 32 1 -0.2174 -7.9721 0.9098 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023126373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:57 Heat of formation + Delta-G solvation = 28.204227 kcal Electronic energy + Delta-G solvation = -20483.171456 eV Core-core repulsion = 17306.440683 eV Total energy + Delta-G solvation = -3176.730773 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.052 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.37237 -40.15126 -38.49097 -37.63747 -35.52474 -33.62224 -32.01403 -31.72655 -30.08961 -28.00925 -25.87945 -24.61802 -23.93633 -23.15699 -21.09437 -20.78415 -19.36302 -18.21299 -17.82531 -17.35453 -17.24978 -16.70255 -16.17029 -15.96279 -15.66254 -15.29913 -14.66664 -14.44041 -14.23672 -14.10149 -13.99572 -13.75467 -13.55084 -13.35885 -13.07039 -12.73298 -12.47139 -12.15478 -11.88270 -11.78052 -11.52014 -11.10149 -10.81988 -10.58574 -10.17787 -9.74542 -9.43131 -8.95341 -8.57611 -6.63345 -0.50396 0.18628 0.50882 0.60904 0.74387 1.10330 1.32137 1.38637 1.52240 1.54264 2.05045 2.39026 2.52435 2.92885 3.04312 3.18987 3.66812 3.94648 4.13640 4.22710 4.25276 4.31585 4.38394 4.62194 4.69586 4.75733 4.98554 5.02693 5.17292 5.18279 5.26237 5.43818 5.65567 5.69584 5.79334 5.95656 6.18726 6.27568 6.58809 7.16100 7.27531 8.15770 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.004977 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.964615 B = 5624.967920 C = 6904.230092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.023 3.977 3 Si 1.018 2.982 4 H -0.268 1.268 5 H -0.257 1.257 6 H -0.252 1.252 7 C -0.376 4.376 8 H 0.104 0.896 9 N -0.345 5.345 10 C 0.353 3.647 11 N -0.538 5.538 12 C 0.159 3.841 13 C -0.074 4.074 14 C -0.033 4.033 15 C -0.106 4.106 16 C -0.126 4.126 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.189 4.189 21 S 0.231 5.769 22 C -0.389 4.389 23 C 0.492 3.508 24 O -0.610 6.610 25 H 0.302 0.698 26 H 0.209 0.791 27 H 0.103 0.897 28 H 0.139 0.861 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -9.382 7.753 14.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.187 4.187 3 Si 0.836 3.164 4 H -0.193 1.193 5 H -0.180 1.180 6 H -0.176 1.176 7 C -0.504 4.504 8 H 0.121 0.879 9 N -0.045 5.045 10 C 0.070 3.930 11 N -0.262 5.262 12 C 0.028 3.972 13 C -0.090 4.090 14 C -0.035 4.035 15 C -0.125 4.125 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.135 4.135 20 C -0.327 4.327 21 S 0.496 5.504 22 C -0.511 4.511 23 C 0.294 3.706 24 O -0.497 6.497 25 H 0.113 0.887 26 H 0.225 0.775 27 H 0.122 0.878 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.929 -10.065 6.796 13.982 hybrid contribution 0.200 1.727 -0.062 1.740 sum -6.729 -8.338 6.735 12.655 Atomic orbital electron populations 1.69793 1.07794 1.32104 1.39542 1.26671 0.96429 1.03708 0.91878 0.84651 0.78046 0.73587 0.80098 1.19308 1.18026 1.17621 1.20289 0.97381 0.83226 1.49502 0.87862 1.42793 1.24565 1.08192 1.28922 1.25079 0.84370 0.98279 0.85250 1.68213 1.30716 0.96372 1.30936 1.20228 0.91340 0.92913 0.92752 1.18103 0.99924 0.88393 1.02549 1.18374 0.93108 0.99176 0.92876 1.21224 0.99219 0.98506 0.93577 1.21322 0.93500 0.99312 1.00214 1.21543 0.98479 0.96955 0.96907 1.21382 0.98477 1.00182 0.93886 1.21401 0.92909 0.98642 1.00545 1.25330 1.01301 1.04554 1.01502 1.82259 1.30841 0.92397 1.44869 1.24600 1.10073 1.01043 1.15357 1.16594 0.86630 0.84063 0.83334 1.90691 1.32738 1.87091 1.39157 0.88665 0.77534 0.87842 0.84274 0.83213 0.83112 0.84855 0.76959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -41.61 11.19 21.67 0.24 -41.37 16 2 C 0.02 1.08 4.99 84.97 0.42 1.50 16 3 Si 1.02 36.45 29.59 68.60 2.03 38.48 16 4 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.26 -8.39 7.11 99.48 0.71 -7.69 16 6 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 7 C -0.38 -20.29 9.12 84.07 0.77 -19.52 16 8 H 0.10 5.77 7.58 -2.91 -0.02 5.75 16 9 N -0.35 -18.96 2.75 -479.70 -1.32 -20.28 16 10 C 0.35 17.69 10.29 180.10 1.85 19.54 16 11 N -0.54 -25.61 10.43 -188.66 -1.97 -27.57 16 12 C 0.16 7.25 6.96 40.45 0.28 7.53 16 13 C -0.07 -2.68 5.50 -19.82 -0.11 -2.79 16 14 C -0.03 -1.05 5.61 -20.05 -0.11 -1.16 16 15 C -0.11 -3.29 9.64 22.50 0.22 -3.07 16 16 C -0.13 -3.03 10.03 22.23 0.22 -2.80 16 17 C -0.12 -2.42 10.04 22.31 0.22 -2.19 16 18 C -0.12 -2.48 10.03 22.23 0.22 -2.25 16 19 C -0.12 -2.95 9.60 22.49 0.22 -2.73 16 20 C -0.19 -5.70 10.40 66.83 0.70 -5.00 16 21 S 0.23 8.39 22.99 -56.49 -1.30 7.09 16 22 C -0.39 -18.86 6.47 23.28 0.15 -18.71 16 23 C 0.49 27.84 7.42 85.05 0.63 28.47 16 24 O -0.61 -37.42 16.94 -5.16 -0.09 -37.51 16 25 H 0.30 13.04 8.31 -92.70 -0.77 12.27 16 26 H 0.21 9.94 6.16 -2.91 -0.02 9.92 16 27 H 0.10 3.52 8.06 -2.91 -0.02 3.49 16 28 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 30 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.21 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -68.19 301.70 4.45 -63.74 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.17 Total: 20.63 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.68 Total: -3.20 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -3.04 Total: -89.23 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.09 Total: -37.51 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: 8.39 SS G_CDS: -1.30 Total: 7.09 kcal Total: -68.19 4.45 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023126373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.942 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds