Wall clock time and date at job start Tue Mar 31 2020 03:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34899 * 116.99849 * 179.97438 * 14 13 11 16 16 O 1.21621 * 119.99770 * 359.97438 * 15 14 13 17 17 C 1.46472 * 119.99841 * 179.97438 * 15 14 13 18 18 C 1.36633 * 125.99579 * 180.02562 * 17 15 14 19 19 C 1.40303 * 106.70477 * 179.97438 * 18 17 15 20 20 C 1.35176 * 107.12642 * 359.97438 * 19 18 17 21 21 N 1.48017 * 125.60957 * 180.02562 * 20 19 18 22 22 O 1.21806 * 120.00462 * 0.02562 * 21 20 19 23 23 O 1.21807 * 119.99990 * 179.97438 * 21 20 19 24 24 O 1.33915 * 108.77896 * 359.77408 * 20 19 18 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 27 27 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 28 28 H 0.96996 * 119.99986 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 30 30 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 31 31 H 1.08006 * 126.65228 * 359.96169 * 18 17 15 32 32 H 1.08004 * 126.43863 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0044 12 8 0.5613 -5.1050 0.0046 13 6 2.7330 -6.0288 0.0060 14 8 2.0070 -7.2863 0.0070 15 6 2.7417 -8.4177 0.0079 16 8 3.9563 -8.3539 0.0074 17 6 2.0767 -9.7227 0.0095 18 6 2.6971 -10.9401 0.0111 19 6 1.6829 -11.9096 0.0129 20 6 0.5025 -11.2508 0.0129 21 7 -0.8365 -11.8816 0.0150 22 8 -0.9380 -13.0955 0.0175 23 8 -1.8370 -11.1869 0.0153 24 8 0.7440 -9.9336 0.0162 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 3.1566 -3.4355 0.0029 29 1 3.3596 -5.9699 0.8959 30 1 3.3598 -5.9723 -0.8841 31 1 3.7619 -11.1211 0.0108 32 1 1.8196 -12.9809 0.0140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024765941.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:41 Heat of formation + Delta-G solvation = -110.808141 kcal Electronic energy + Delta-G solvation = -22403.436402 eV Core-core repulsion = 18334.782715 eV Total energy + Delta-G solvation = -4068.653687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.79268 -43.27550 -41.85784 -40.45170 -38.07075 -37.94906 -36.24150 -35.02042 -34.45714 -32.76093 -30.96355 -29.01256 -28.01117 -25.12273 -24.34089 -23.66674 -22.34137 -21.73698 -21.07775 -20.02216 -19.91809 -19.37527 -19.21446 -18.30665 -18.30230 -17.46336 -17.44744 -16.99630 -16.23538 -16.15740 -15.46882 -15.10515 -14.72436 -14.66670 -14.62248 -14.22815 -13.96820 -13.78069 -13.13203 -12.93376 -12.79746 -12.77659 -12.61284 -12.47358 -12.23635 -12.14444 -11.85108 -11.48913 -11.00692 -10.85485 -10.83070 -9.98112 -8.31492 -6.48385 -1.72676 -0.82305 -0.42186 0.62849 0.68205 1.25860 1.43029 1.44246 1.48045 1.49286 1.58122 2.28036 2.45852 3.01304 3.04171 3.17896 3.38598 3.59724 3.70697 3.95388 3.98134 4.32837 4.54076 4.71182 4.74976 4.87952 5.05766 5.18407 5.38193 5.59462 5.79680 6.02708 6.16149 6.60720 6.72710 7.18132 7.32706 8.80946 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.002456 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.524006 B =11397.643897 C =12314.718965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.250 1.250 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.495 3.505 12 O -0.588 6.588 13 C 0.061 3.939 14 O -0.343 6.343 15 C 0.555 3.445 16 O -0.465 6.465 17 C 0.000 4.000 18 C -0.081 4.081 19 C -0.051 4.051 20 C 0.018 3.982 21 N 0.059 4.941 22 O -0.066 6.066 23 O -0.205 6.205 24 O -0.157 6.157 25 H 0.269 0.731 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.415 0.585 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.233 0.767 32 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.746 -25.462 0.024 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.347 5.347 11 C 0.281 3.719 12 O -0.469 6.469 13 C -0.015 4.015 14 O -0.258 6.258 15 C 0.398 3.602 16 O -0.354 6.354 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.072 4.072 20 C -0.116 4.116 21 N 0.580 4.420 22 O -0.299 6.299 23 O -0.405 6.405 24 O -0.053 6.053 25 H 0.078 0.922 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.252 0.748 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.250 0.750 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 12.463 -24.716 0.025 27.680 hybrid contribution -0.551 1.223 0.003 1.341 sum 11.912 -23.493 0.027 26.340 Atomic orbital electron populations 1.70144 1.08350 1.28601 1.49938 1.26087 0.95764 1.04017 0.93868 0.85085 0.79173 0.77217 0.77579 1.17369 1.20598 1.20612 1.21636 0.94503 0.90212 1.52865 0.89297 1.18645 0.88632 0.83927 0.94546 1.46002 1.11825 1.04529 1.72314 1.20751 0.89299 0.84906 0.76940 1.90730 1.19248 1.85327 1.51550 1.23010 0.92363 0.77495 1.08619 1.86719 1.40998 1.14962 1.83150 1.19073 0.84756 0.82555 0.73827 1.91009 1.12245 1.86625 1.45480 1.21500 0.78790 0.94815 1.10189 1.22730 1.04051 0.86019 0.97217 1.22485 0.85397 1.05065 0.94253 1.23039 0.86302 0.83054 1.19189 1.42401 1.00396 1.00817 0.98424 1.94563 1.91648 0.93993 1.49717 1.94752 1.26028 1.62998 1.56738 1.84097 1.26743 1.23591 1.70885 0.92221 0.99077 0.99093 0.74811 0.84201 0.84209 0.75038 0.74494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.99 41.38 29.54 68.60 2.03 43.41 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -29.12 9.28 25.60 0.24 -28.89 16 8 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.26 14.13 5.43 85.63 0.46 14.59 16 10 N -0.70 -27.49 5.55 -466.78 -2.59 -30.08 16 11 C 0.50 19.11 7.91 87.66 0.69 19.80 16 12 O -0.59 -29.77 16.50 15.76 0.26 -29.51 16 13 C 0.06 1.53 5.96 71.24 0.42 1.96 16 14 O -0.34 -9.88 9.77 -51.13 -0.50 -10.38 16 15 C 0.55 12.03 7.93 69.97 0.55 12.58 16 16 O -0.47 -9.51 16.66 19.44 0.32 -9.19 16 17 C 0.00 -0.01 7.18 24.04 0.17 0.17 16 18 C -0.08 -0.64 10.62 22.40 0.24 -0.40 16 19 C -0.05 -0.39 10.53 22.07 0.23 -0.16 16 20 C 0.02 0.33 8.23 81.22 0.67 1.00 16 21 N 0.06 1.33 4.45 -154.82 -0.69 0.64 16 22 O -0.07 -1.23 19.00 18.88 0.36 -0.87 16 23 O -0.20 -6.07 19.25 21.80 0.42 -5.65 16 24 O -0.16 -3.80 10.67 4.21 0.04 -3.76 16 25 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 28 H 0.42 12.68 8.32 -92.71 -0.77 11.91 16 29 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.23 0.00 8.06 -2.91 -0.02 -0.03 16 32 H 0.24 -0.41 8.06 -2.91 -0.02 -0.43 16 Total: -1.00 -80.97 317.42 4.52 -76.45 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 0.43 Total: 3.05 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 4.15 Total: 21.24 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.99 Total: -84.79 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: 0.91 Total: -59.35 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -80.97 4.52 -76.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024765941.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.359 kcal (2) G-P(sol) polarization free energy of solvation -80.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds