Wall clock time and date at job start Tue Mar 31 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48496 * 109.47218 * 270.00090 * 3 2 1 5 5 H 1.48497 * 109.47220 * 29.99947 * 3 2 1 6 6 H 1.48503 * 109.47018 * 149.99857 * 3 2 1 7 7 C 1.38795 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00288 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00187 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46840 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00269 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99619 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99910 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47362 * 180.02562 * 14 13 11 16 16 N 1.46493 * 109.47245 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99793 * 179.97438 * 16 15 14 18 18 O 1.21695 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.46661 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.36547 * 125.98711 * 179.97438 * 19 17 16 21 21 C 1.40360 * 106.70833 * 180.02562 * 20 19 17 22 22 C 1.35131 * 107.11647 * 359.97438 * 21 20 19 23 23 O 1.33934 * 108.76477 * 0.02562 * 22 21 20 24 24 H 0.97005 * 120.00082 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46711 * 59.99933 * 10 9 7 26 26 H 1.09001 * 109.47122 * 299.99850 * 10 9 7 27 27 H 0.96996 * 120.00518 * 359.97438 * 13 11 10 28 28 H 1.08997 * 109.47626 * 59.99325 * 14 13 11 29 29 H 1.09001 * 109.46962 * 299.99650 * 14 13 11 30 30 H 1.08997 * 109.47315 * 59.99117 * 15 14 13 31 31 H 1.09001 * 109.46782 * 299.99743 * 15 14 13 32 32 H 0.96998 * 120.00266 * 359.97438 * 16 15 14 33 33 H 1.08005 * 126.64485 * 0.02562 * 20 19 17 34 34 H 1.08003 * 126.44294 * 180.02562 * 21 20 19 35 35 H 1.07997 * 125.61851 * 180.26772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5730 -3.2324 -0.0002 12 8 6.3439 -2.2963 -0.0006 13 7 6.0456 -4.4946 -0.0010 14 6 7.4907 -4.7357 -0.0005 15 6 7.7564 -6.2425 -0.0022 16 7 9.2014 -6.4835 -0.0011 17 6 9.6740 -7.7457 -0.0017 18 8 8.9004 -8.6851 -0.0027 19 6 11.1206 -7.9870 -0.0012 20 6 11.7303 -9.2088 -0.0013 21 6 13.1133 -8.9697 -0.0001 22 6 13.2852 -7.6294 0.0001 23 8 12.0822 -7.0407 -0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 3.6440 -3.4313 -0.8904 26 1 3.6433 -3.4318 0.8896 27 1 5.4291 -5.2434 -0.0011 28 1 7.9333 -4.2893 0.8899 29 1 7.9340 -4.2881 -0.8900 30 1 7.3139 -6.6885 -0.8928 31 1 7.3131 -6.6905 0.8871 32 1 9.8180 -5.7347 0.0001 33 1 11.2427 -10.1725 -0.0020 34 1 13.8935 -9.7165 -0.0002 35 1 14.2360 -7.1172 -0.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033001190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:33 Heat of formation + Delta-G solvation = -57.996568 kcal Electronic energy + Delta-G solvation = -19865.600734 eV Core-core repulsion = 16377.823095 eV Total energy + Delta-G solvation = -3487.777640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.15639 -39.99069 -39.28244 -36.17873 -34.21539 -33.51099 -32.45452 -31.05932 -30.02569 -28.08449 -25.63513 -24.19714 -22.67245 -22.18503 -20.98783 -20.43708 -19.10901 -17.90845 -16.89043 -16.88501 -16.71910 -16.12259 -16.01815 -15.68778 -15.10874 -14.96481 -14.58255 -14.14500 -13.82828 -13.55549 -13.49346 -13.35823 -13.15345 -12.81430 -12.55724 -12.16327 -11.82325 -11.28695 -11.02325 -10.85157 -10.63278 -10.56531 -9.88282 -9.71141 -9.64402 -9.17806 -9.13499 -9.01238 -8.53063 -6.94372 -6.30255 -4.02558 0.57095 1.86323 2.11909 2.50364 2.71963 2.85351 2.88289 3.31280 3.36884 3.48953 3.65773 4.15362 4.31462 4.32581 4.40429 4.55051 4.70939 4.71015 5.05429 5.08736 5.12934 5.23446 5.27612 5.39309 5.51638 5.58146 5.73315 5.79607 5.81225 5.98122 6.29690 6.35865 6.92867 7.47209 7.57380 7.92688 8.37951 8.40510 9.15705 10.78898 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.051521 B = 0.002053 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.336048 B =13632.474260 C =14150.062995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.111 3.889 15 C 0.108 3.892 16 N -0.716 5.716 17 C 0.606 3.394 18 O -0.517 6.517 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.226 4.226 22 C -0.003 4.003 23 O -0.164 6.164 24 H 0.271 0.729 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.403 0.597 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.409 0.591 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.616 -17.735 0.082 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.390 5.390 14 C -0.014 4.014 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.392 3.608 18 O -0.395 6.395 19 C -0.134 4.134 20 C -0.138 4.138 21 C -0.245 4.245 22 C -0.073 4.073 23 O -0.059 6.059 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.237 0.763 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.179 0.821 34 H 0.176 0.824 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 26.064 -16.399 0.084 30.793 hybrid contribution -0.586 -0.547 -0.033 0.802 sum 25.478 -16.945 0.051 30.599 Atomic orbital electron populations 1.69938 1.05906 1.27780 1.47970 1.24715 0.94462 0.98976 0.93174 0.86730 0.81872 0.83280 0.79926 1.19207 1.19930 1.15945 1.22312 0.88195 0.97579 1.58879 0.89323 1.84790 1.09400 0.99906 1.97446 1.23277 0.93641 1.04531 1.06032 1.20298 0.90733 0.81965 0.75059 1.90707 1.58773 1.42129 1.47539 1.45751 1.06663 1.08499 1.78110 1.21321 0.82921 0.93806 1.03380 1.21540 0.80451 0.95774 1.03834 1.45663 1.08436 1.07792 1.74896 1.16481 0.84173 0.83295 0.76843 1.90913 1.55609 1.42560 1.50373 1.22006 0.88894 0.87867 1.14622 1.22019 0.93569 0.98229 0.99967 1.21904 0.96762 0.96446 1.09427 1.24476 0.87444 0.93194 1.02185 1.84070 1.14887 1.36497 1.70459 0.91922 0.88297 0.88255 0.76254 0.90740 0.90744 0.90097 0.90106 0.75530 0.82107 0.82447 0.77166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.62 27.74 -169.99 -4.72 16.91 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.32 6.16 36.00 0.22 -2.10 16 11 C 0.53 8.99 7.85 -10.99 -0.09 8.91 16 12 O -0.52 -10.70 15.86 5.56 0.09 -10.61 16 13 N -0.73 -8.49 5.56 -60.30 -0.33 -8.82 16 14 C 0.11 1.06 5.79 -4.04 -0.02 1.04 16 15 C 0.11 0.87 5.79 -4.05 -0.02 0.84 16 16 N -0.72 -5.76 5.55 -61.63 -0.34 -6.10 16 17 C 0.61 6.13 7.79 -12.86 -0.10 6.03 16 18 O -0.52 -6.79 16.86 5.19 0.09 -6.70 16 19 C -0.08 -0.72 7.13 -36.79 -0.26 -0.98 16 20 C -0.12 -0.91 10.62 -39.39 -0.42 -1.33 16 21 C -0.23 -1.25 10.87 -39.89 -0.43 -1.68 16 22 C 0.00 -0.01 12.08 29.63 0.36 0.34 16 23 O -0.16 -1.20 10.40 5.00 0.05 -1.15 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 26 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.41 2.58 8.23 -40.82 -0.34 2.25 16 33 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.16 0.49 8.06 -52.48 -0.42 0.06 16 35 H 0.21 0.17 8.06 -52.49 -0.42 -0.26 16 LS Contribution 331.11 15.07 4.99 4.99 Total: -1.00 -36.47 331.11 -6.01 -42.48 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.06 Total: 1.01 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.55 Total: -0.85 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.10 Total: -40.55 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.23 Total: -18.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.91 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.47 -6.01 -42.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033001190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.515 kcal (2) G-P(sol) polarization free energy of solvation -36.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds