Wall clock time and date at job start Tue Mar 31 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48496 * 109.47218 * 270.00090 * 3 2 1 5 5 H 1.48497 * 109.47220 * 29.99947 * 3 2 1 6 6 H 1.48503 * 109.47018 * 149.99857 * 3 2 1 7 7 C 1.38795 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00288 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00187 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46840 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00269 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99619 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99910 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47362 * 180.02562 * 14 13 11 16 16 N 1.46493 * 109.47245 * 180.02562 * 15 14 13 17 17 C 1.34778 * 119.99793 * 179.97438 * 16 15 14 18 18 O 1.21695 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.46661 * 119.99796 * 179.97438 * 17 16 15 20 20 C 1.36547 * 125.98711 * 179.97438 * 19 17 16 21 21 C 1.40360 * 106.70833 * 180.02562 * 20 19 17 22 22 C 1.35131 * 107.11647 * 359.97438 * 21 20 19 23 23 O 1.33934 * 108.76477 * 0.02562 * 22 21 20 24 24 H 0.97005 * 120.00082 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46711 * 59.99933 * 10 9 7 26 26 H 1.09001 * 109.47122 * 299.99850 * 10 9 7 27 27 H 0.96996 * 120.00518 * 359.97438 * 13 11 10 28 28 H 1.08997 * 109.47626 * 59.99325 * 14 13 11 29 29 H 1.09001 * 109.46962 * 299.99650 * 14 13 11 30 30 H 1.08997 * 109.47315 * 59.99117 * 15 14 13 31 31 H 1.09001 * 109.46782 * 299.99743 * 15 14 13 32 32 H 0.96998 * 120.00266 * 359.97438 * 16 15 14 33 33 H 1.08005 * 126.64485 * 0.02562 * 20 19 17 34 34 H 1.08003 * 126.44294 * 180.02562 * 21 20 19 35 35 H 1.07997 * 125.61851 * 180.26772 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5730 -3.2324 -0.0002 12 8 6.3439 -2.2963 -0.0006 13 7 6.0456 -4.4946 -0.0010 14 6 7.4907 -4.7357 -0.0005 15 6 7.7564 -6.2425 -0.0022 16 7 9.2014 -6.4835 -0.0011 17 6 9.6740 -7.7457 -0.0017 18 8 8.9004 -8.6851 -0.0027 19 6 11.1206 -7.9870 -0.0012 20 6 11.7303 -9.2088 -0.0013 21 6 13.1133 -8.9697 -0.0001 22 6 13.2852 -7.6294 0.0001 23 8 12.0822 -7.0407 -0.0004 24 1 -0.4850 0.8401 -0.0004 25 1 3.6440 -3.4313 -0.8904 26 1 3.6433 -3.4318 0.8896 27 1 5.4291 -5.2434 -0.0011 28 1 7.9333 -4.2893 0.8899 29 1 7.9340 -4.2881 -0.8900 30 1 7.3139 -6.6885 -0.8928 31 1 7.3131 -6.6905 0.8871 32 1 9.8180 -5.7347 0.0001 33 1 11.2427 -10.1725 -0.0020 34 1 13.8935 -9.7165 -0.0002 35 1 14.2360 -7.1172 -0.0032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033001190.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:33 Heat of formation + Delta-G solvation = -86.907301 kcal Electronic energy + Delta-G solvation = -19866.854398 eV Core-core repulsion = 16377.823095 eV Total energy + Delta-G solvation = -3489.031303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.64974 -40.88870 -40.44090 -37.09630 -35.19973 -34.66514 -34.03560 -32.00342 -30.95620 -29.07871 -27.83629 -24.93162 -23.36090 -22.68408 -21.99240 -21.32865 -19.98315 -19.61740 -18.00184 -17.55309 -17.49045 -17.13292 -16.98825 -16.84760 -16.78764 -16.16963 -15.62614 -15.21837 -15.10662 -14.92723 -14.67200 -14.12278 -13.94845 -13.77949 -13.56959 -13.33990 -13.03871 -12.95429 -12.89279 -12.63337 -11.86709 -11.65395 -11.16551 -11.08101 -11.06132 -10.53444 -10.44659 -10.21042 -9.66643 -8.98954 -8.50860 -6.21795 -0.00779 0.97454 1.32288 1.41406 1.41682 1.50483 1.53288 1.64217 1.96613 2.03857 2.25381 2.47620 2.74071 2.87396 3.51368 3.74260 3.88959 3.94925 3.97286 4.11967 4.24899 4.34825 4.49173 4.60928 4.77348 4.79276 4.90231 4.95309 5.07851 5.31377 5.38419 5.71269 5.80104 6.12376 6.29131 6.40096 6.87737 6.94215 7.13712 8.61423 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.051521 B = 0.002053 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.336048 B =13632.474260 C =14150.062995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.063 0.937 9 S -0.175 6.175 10 C -0.113 4.113 11 C 0.539 3.461 12 O -0.559 6.559 13 N -0.710 5.710 14 C 0.116 3.884 15 C 0.117 3.883 16 N -0.707 5.707 17 C 0.605 3.395 18 O -0.557 6.557 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.236 4.236 22 C 0.012 3.988 23 O -0.171 6.171 24 H 0.277 0.723 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.420 0.580 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.418 0.582 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.166 -18.120 0.096 33.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.159 1.159 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.264 4.264 11 C 0.325 3.675 12 O -0.437 6.437 13 N -0.365 5.365 14 C -0.009 4.009 15 C -0.007 4.007 16 N -0.359 5.359 17 C 0.392 3.608 18 O -0.438 6.438 19 C -0.164 4.164 20 C -0.145 4.145 21 C -0.255 4.255 22 C -0.057 4.057 23 O -0.066 6.066 24 H 0.086 0.914 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.257 0.743 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.255 0.745 33 H 0.177 0.823 34 H 0.199 0.801 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 28.617 -16.817 0.099 33.193 hybrid contribution -1.259 -0.614 -0.043 1.401 sum 27.358 -17.431 0.056 32.439 Atomic orbital electron populations 1.70019 1.07333 1.29012 1.49130 1.25584 0.95288 1.02327 0.92912 0.85852 0.80688 0.79529 0.80208 1.18694 1.18446 1.15948 1.22472 0.90315 0.96703 1.58246 0.91924 1.84688 1.06366 1.06179 1.97602 1.23275 0.95722 0.99645 1.07724 1.19891 0.89448 0.83057 0.75135 1.90699 1.59240 1.43731 1.50033 1.45475 1.08120 1.07218 1.75734 1.21369 0.81195 0.94780 1.03515 1.21420 0.80620 0.94460 1.04192 1.45577 1.08574 1.07649 1.74067 1.16660 0.84719 0.83193 0.76192 1.90880 1.56741 1.43637 1.52505 1.21784 0.88675 0.88557 1.17398 1.22281 0.95007 0.97998 0.99226 1.22237 0.96124 0.97538 1.09590 1.25391 0.87773 0.93374 0.99202 1.84063 1.15481 1.36449 1.70651 0.91394 0.86637 0.86601 0.74287 0.90635 0.90638 0.89786 0.89795 0.74460 0.82327 0.80053 0.73031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.64 13.97 21.65 0.30 -55.34 16 2 C 0.04 2.58 5.50 84.86 0.47 3.05 16 3 Si 0.92 44.63 27.74 68.60 1.90 46.53 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 7 C -0.53 -30.55 10.04 67.95 0.68 -29.87 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -8.65 18.55 -56.49 -1.05 -9.70 16 10 C -0.11 -4.05 6.16 71.23 0.44 -3.61 16 11 C 0.54 17.26 7.85 87.66 0.69 17.94 16 12 O -0.56 -22.51 15.86 -3.01 -0.05 -22.56 16 13 N -0.71 -14.79 5.56 -463.07 -2.57 -17.36 16 14 C 0.12 1.98 5.79 86.38 0.50 2.48 16 15 C 0.12 1.69 5.79 86.38 0.50 2.19 16 16 N -0.71 -10.61 5.55 -467.11 -2.59 -13.21 16 17 C 0.60 12.07 7.79 86.44 0.67 12.75 16 18 O -0.56 -14.77 16.86 -4.33 -0.07 -14.84 16 19 C -0.11 -1.92 7.13 24.08 0.17 -1.74 16 20 C -0.12 -1.85 10.62 22.39 0.24 -1.62 16 21 C -0.24 -2.08 10.87 22.07 0.24 -1.84 16 22 C 0.01 0.08 12.08 67.10 0.81 0.89 16 23 O -0.17 -2.22 10.40 -5.01 -0.05 -2.27 16 24 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 25 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 26 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 27 H 0.42 6.17 8.47 -92.71 -0.79 5.39 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.42 4.73 8.23 -92.71 -0.76 3.96 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.25 -0.72 8.06 -2.91 -0.02 -0.74 16 Total: -1.00 -80.01 331.11 0.78 -79.23 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -0.45 Total: 8.88 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.41 Total: 0.63 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -4.86 Total: -85.90 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.17 Total: -39.67 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.05 Total: -9.70 kcal Total: -80.01 0.78 -79.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033001190.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.678 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds