Wall clock time and date at job start Tue Mar 31 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38546 * 119.94969 * 2 1 4 4 N 1.33544 * 133.89655 * 359.97438 * 3 2 1 5 5 C 1.30872 * 109.80849 * 180.02562 * 4 3 2 6 6 C 1.50699 * 125.14373 * 180.02562 * 5 4 3 7 7 Cl 1.80300 * 109.47087 * 270.01698 * 6 5 4 8 8 N 1.34727 * 109.70581 * 359.97438 * 5 4 3 9 9 C 1.46508 * 126.50168 * 179.97438 * 8 5 4 10 10 C 1.50693 * 109.47347 * 270.04801 * 9 8 5 11 11 H 1.08004 * 120.00127 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00359 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00159 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99583 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47107 * 90.00205 * 14 12 10 16 16 H 1.48503 * 109.47112 * 210.00056 * 14 12 10 17 17 H 1.48501 * 109.47530 * 330.00317 * 14 12 10 18 18 C 1.38043 * 106.99584 * 0.02562 * 8 5 4 19 19 C 1.41163 * 134.59591 * 179.97438 * 18 8 5 20 20 O 1.21787 * 120.38557 * 0.03006 * 19 18 8 21 21 N 1.34928 * 119.22468 * 180.02562 * 19 18 8 22 22 H 0.96998 * 119.50789 * 179.97438 * 21 19 18 23 23 C 1.34423 * 120.99270 * 0.02562 * 21 19 18 24 24 O 1.21603 * 119.16674 * 180.02562 * 23 21 19 25 25 H 1.09004 * 109.46654 * 90.00302 * 1 2 3 26 26 H 1.09003 * 109.46782 * 209.99675 * 1 2 3 27 27 H 1.08998 * 109.47393 * 329.99958 * 1 2 3 28 28 H 1.08999 * 109.47593 * 30.01943 * 6 5 4 29 29 H 1.09000 * 109.46623 * 150.02287 * 6 5 4 30 30 H 1.08999 * 109.46599 * 30.04864 * 9 8 5 31 31 H 1.09002 * 109.47001 * 150.04058 * 9 8 5 32 32 H 0.96994 * 119.99620 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2005 0.0000 4 7 1.7851 2.4832 -0.0004 5 6 2.8444 3.2517 -0.0007 6 6 2.8229 4.7586 -0.0007 7 17 2.8133 5.3595 -1.7006 8 7 3.9570 2.4919 0.0000 9 6 5.3408 2.9729 -0.0005 10 6 5.8149 3.1374 -1.4214 11 1 5.1519 2.9064 -2.2421 12 6 7.0955 3.5819 -1.6739 13 7 7.5093 3.7250 -2.9140 14 14 8.2424 3.9808 -0.2545 15 1 9.0056 2.7638 0.1222 16 1 9.1872 5.0497 -0.6670 17 1 7.4463 4.4459 0.9096 18 6 3.5456 1.1741 0.0003 19 6 4.2098 -0.0715 0.0006 20 8 5.4267 -0.1207 0.0012 21 7 3.4808 -1.2068 0.0003 22 1 3.9329 -2.0649 0.0001 23 6 2.1371 -1.1666 -0.0008 24 8 1.5130 -2.2102 -0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.9282 5.1092 0.5137 29 1 3.7080 5.1345 0.5125 30 1 5.3919 3.9329 0.5130 31 1 5.9764 2.2517 0.5135 32 1 8.4100 4.0380 -3.0916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036047738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:19 Heat of formation + Delta-G solvation = -13.255522 kcal Electronic energy + Delta-G solvation = -22292.711805 eV Core-core repulsion = 18701.290233 eV Total energy + Delta-G solvation = -3591.421572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 298.062 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.15761 -42.14993 -40.19364 -37.67463 -36.93489 -36.01068 -35.77227 -34.14598 -32.42735 -30.15082 -29.11245 -27.88250 -25.43529 -24.62774 -24.01008 -21.46586 -20.39774 -20.05274 -19.33822 -18.80097 -18.19411 -17.34583 -16.92536 -16.70013 -16.66611 -16.00806 -15.81355 -15.44982 -15.07604 -14.80763 -14.73990 -14.46367 -14.15000 -14.02875 -13.35877 -13.18097 -12.74236 -12.46681 -12.35947 -11.89809 -11.80266 -11.62753 -11.57968 -11.46945 -11.35542 -11.32933 -10.86446 -10.64618 -9.24054 -8.36513 -6.46323 -0.30566 0.69914 0.75467 0.90816 1.32057 1.38561 1.41871 1.51071 1.87115 1.89662 2.27306 2.28957 2.75122 2.96628 3.18905 3.29218 3.93735 4.00328 4.15523 4.25560 4.45751 4.52221 4.53693 4.80494 4.82112 4.91773 5.02200 5.18356 5.32830 5.67255 5.96401 6.13274 6.24664 6.37186 6.56887 6.81899 7.15768 8.79437 Molecular weight = 298.06amu Principal moments of inertia in cm(-1) A = 0.015178 B = 0.006731 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.385113 B = 4158.867554 C = 5509.523740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.505 5.505 3 C 0.308 3.692 4 N -0.481 5.481 5 C 0.262 3.738 6 C 0.047 3.953 7 Cl -0.162 7.162 8 N -0.371 5.371 9 C 0.208 3.792 10 C -0.531 4.531 11 H 0.035 0.965 12 C 0.030 3.970 13 N -0.932 5.932 14 Si 0.932 3.068 15 H -0.278 1.278 16 H -0.276 1.276 17 H -0.225 1.225 18 C -0.167 4.167 19 C 0.592 3.408 20 O -0.532 6.532 21 N -0.642 5.642 22 H 0.445 0.555 23 C 0.715 3.285 24 O -0.556 6.556 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.168 0.832 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 -0.121 10.780 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.234 5.234 3 C 0.074 3.926 4 N -0.207 5.207 5 C -0.001 4.001 6 C -0.016 4.016 7 Cl -0.136 7.136 8 N -0.048 5.048 9 C 0.088 3.912 10 C -0.569 4.569 11 H 0.053 0.947 12 C -0.171 4.171 13 N -0.570 5.570 14 Si 0.754 3.246 15 H -0.203 1.203 16 H -0.201 1.201 17 H -0.147 1.147 18 C -0.286 4.286 19 C 0.386 3.614 20 O -0.408 6.408 21 N -0.312 5.312 22 H 0.290 0.710 23 C 0.417 3.583 24 O -0.431 6.431 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.186 0.814 29 H 0.153 0.847 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.866 -0.167 10.546 16.637 hybrid contribution 2.012 -0.677 -0.360 2.153 sum -10.854 -0.844 10.185 14.908 Atomic orbital electron populations 1.22192 0.72364 1.05951 1.04721 1.43866 1.09828 0.99917 1.69761 1.18062 0.86454 0.87891 1.00202 1.69544 1.28222 0.97725 1.25179 1.23464 0.79653 0.96224 1.00798 1.22875 1.10314 0.82784 0.85652 1.98782 1.99465 1.88333 1.27027 1.45029 1.09709 1.03265 1.46839 1.20279 0.74919 0.97413 0.98624 1.20886 0.99335 1.46520 0.90141 0.94716 1.25611 0.98978 0.94144 0.98323 1.70004 1.19190 1.46533 1.21287 0.85959 0.79712 0.78543 0.80347 1.20349 1.20086 1.14723 1.19021 0.94174 0.87684 1.27748 1.15631 0.86380 0.83369 0.76029 1.90963 1.13734 1.87382 1.48767 1.43910 1.06283 1.11421 1.69559 0.70978 1.15428 0.81317 0.83480 0.78121 1.91038 1.65983 1.29645 1.56461 0.90244 0.87991 0.87718 0.81389 0.84669 0.89755 0.93025 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 10.39 127.77 1.33 3.03 16 2 N -0.50 -14.06 3.06 -678.19 -2.07 -16.14 16 3 C 0.31 10.05 7.63 132.82 1.01 11.06 16 4 N -0.48 -14.93 11.16 -184.15 -2.06 -16.98 16 5 C 0.26 8.34 7.23 138.12 1.00 9.34 16 6 C 0.05 1.14 6.94 71.24 0.49 1.64 16 7 Cl -0.16 -5.13 29.13 -2.72 -0.08 -5.21 16 8 N -0.37 -14.26 2.76 -509.42 -1.41 -15.67 16 9 C 0.21 8.77 4.54 85.63 0.39 9.16 16 10 C -0.53 -28.07 9.94 25.60 0.25 -27.82 16 11 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 12 C 0.03 1.61 5.47 84.66 0.46 2.08 16 13 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 14 Si 0.93 39.66 27.47 68.60 1.88 41.54 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 16 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.22 -8.01 6.54 99.48 0.65 -7.35 16 18 C -0.17 -6.38 6.90 39.05 0.27 -6.11 16 19 C 0.59 22.56 7.73 84.94 0.66 23.21 16 20 O -0.53 -23.99 16.82 -4.63 -0.08 -24.07 16 21 N -0.64 -19.36 5.20 -449.32 -2.33 -21.70 16 22 H 0.45 11.21 8.86 -92.71 -0.82 10.39 16 23 C 0.72 21.04 8.37 179.21 1.50 22.54 16 24 O -0.56 -17.13 16.64 -4.04 -0.07 -17.20 16 25 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.10 1.75 7.38 -2.39 -0.02 1.73 16 27 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 28 H 0.17 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.14 2.79 7.01 -2.39 -0.02 2.77 16 30 H 0.08 3.02 6.05 -2.39 -0.01 3.00 16 31 H 0.05 2.30 6.69 -2.39 -0.02 2.29 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -71.53 298.76 1.78 -69.75 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.33 Total: 12.60 kcal Atomic # 6 Polarization: 40.76 SS G_CDS: 7.37 Total: 48.12 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -7.57 Total: -125.54 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.15 Total: -41.27 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.88 Total: 41.54 kcal Atomic # 17 Polarization: -5.13 SS G_CDS: -0.08 Total: -5.21 kcal Total: -71.53 1.78 -69.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036047738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.490 kcal (2) G-P(sol) polarization free energy of solvation -71.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds