Wall clock time and date at job start Tue Mar 31 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.46966 * 120.59481 * 269.71752 * 5 2 1 7 7 C 1.53809 * 108.39573 * 124.75884 * 6 5 2 8 8 N 1.46967 * 108.57845 * 49.63953 * 7 6 5 9 9 S 1.65601 * 120.59553 * 124.62350 * 8 7 6 10 10 O 1.42106 * 106.40027 * 23.56084 * 9 8 7 11 11 O 1.42093 * 106.40660 * 156.48023 * 9 8 7 12 12 C 1.76198 * 107.21742 * 270.02540 * 9 8 7 13 13 H 1.08000 * 120.00478 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99829 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00303 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99955 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47195 * 59.99649 * 16 14 12 18 18 H 1.48503 * 109.47082 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46727 * 299.99881 * 16 14 12 20 20 C 1.46963 * 118.81066 * 304.64532 * 8 7 6 21 21 C 1.46967 * 120.59273 * 90.00120 * 5 2 1 22 22 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 23 23 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 24 24 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 25 25 H 1.08999 * 109.61091 * 244.54334 * 6 5 2 26 26 H 1.09005 * 109.60534 * 5.05581 * 6 5 2 27 27 H 1.09003 * 109.74363 * 289.85133 * 7 6 5 28 28 H 1.08999 * 109.53325 * 169.30427 * 7 6 5 29 29 H 0.96993 * 120.00001 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.61092 * 295.48073 * 20 8 7 31 31 H 1.09012 * 109.60819 * 174.97029 * 20 8 7 32 32 H 1.08999 * 109.60945 * 354.94740 * 21 5 2 33 33 H 1.09003 * 109.60876 * 115.45796 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4198 0.3187 2.6289 7 6 1.4990 -0.1352 3.7743 8 7 1.6857 -1.5781 3.9814 9 16 2.1000 -2.1691 5.4718 10 8 1.6732 -1.2006 6.4202 11 8 1.6732 -3.5242 5.4991 12 6 3.8599 -2.1999 5.5498 13 1 4.4439 -1.8655 4.7052 14 6 4.4917 -2.6521 6.6889 15 7 3.7806 -3.0600 7.7174 16 14 6.3576 -2.6856 6.7714 17 1 6.8858 -1.3096 6.5904 18 1 6.7853 -3.2096 8.0934 19 1 6.8849 -3.5636 5.6961 20 6 1.4985 -2.4872 2.8419 21 6 2.4138 -2.0340 1.6978 22 1 -0.3634 0.3787 -0.9553 23 1 -0.3633 -1.0168 0.1497 24 1 -0.3633 0.6380 0.8056 25 1 3.4592 0.2816 2.9549 26 1 2.1629 1.3355 2.3319 27 1 0.4600 0.0655 3.5129 28 1 1.7598 0.4020 4.6861 29 1 4.2251 -3.3777 8.5188 30 1 0.4595 -2.4540 2.5142 31 1 1.7590 -3.5035 3.1381 32 1 2.1530 -2.5711 0.7860 33 1 3.4528 -2.2346 1.9592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062096919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:45 Heat of formation + Delta-G solvation = -146.829402 kcal Electronic energy + Delta-G solvation = -21489.437203 eV Core-core repulsion = 17997.418339 eV Total energy + Delta-G solvation = -3492.018864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.054 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.21066 -37.24747 -36.02935 -35.39099 -34.04981 -33.43406 -32.99376 -31.12359 -29.63399 -26.17078 -25.99534 -23.75981 -21.20281 -19.31127 -18.47795 -18.10018 -16.86621 -16.41936 -16.24027 -16.16044 -15.23767 -15.07031 -14.62358 -14.40078 -14.03036 -13.72761 -13.46588 -13.43097 -13.33819 -12.52187 -12.50570 -12.18403 -12.05011 -11.90013 -11.45375 -11.43056 -11.23104 -11.21658 -11.17677 -10.94331 -10.64804 -10.37304 -10.19606 -10.14783 -9.54312 -9.27323 -8.86481 -8.16987 -6.73653 -5.36539 0.15137 2.14563 2.54010 3.06636 3.11429 3.16805 3.76899 4.00882 4.01594 4.38293 4.52601 4.60329 4.76987 4.79292 5.10965 5.32995 5.39467 5.44301 5.45552 5.54847 5.83346 5.87912 5.90508 5.95910 6.08327 6.29144 6.31158 6.57394 6.71153 7.28653 7.44995 7.92944 8.85314 10.19881 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.005347 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.889976 B = 5235.286088 C = 5664.700595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.610 3.390 3 O -0.958 6.958 4 O -0.958 6.958 5 N -0.994 5.994 6 C 0.105 3.895 7 C 0.110 3.890 8 N -1.009 6.009 9 S 2.713 3.287 10 O -1.003 7.003 11 O -1.003 7.003 12 C -1.019 5.019 13 H 0.102 0.898 14 C 0.134 3.866 15 N -0.846 5.846 16 Si 0.920 3.080 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.264 1.264 20 C 0.110 3.890 21 C 0.105 3.895 22 H 0.123 0.877 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.292 0.708 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 5.099 -12.864 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.703 3.297 3 O -0.948 6.948 4 O -0.948 6.948 5 N -0.832 5.832 6 C -0.022 4.022 7 C -0.018 4.018 8 N -0.844 5.844 9 S 2.814 3.186 10 O -0.993 6.993 11 O -0.993 6.993 12 C -1.153 5.153 13 H 0.120 0.880 14 C -0.084 4.084 15 N -0.476 5.476 16 Si 0.744 3.256 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.018 4.018 21 C -0.022 4.022 22 H 0.142 0.858 23 H 0.147 0.853 24 H 0.147 0.853 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.173 5.031 -12.695 14.602 hybrid contribution 0.844 -0.064 0.158 0.861 sum -4.329 4.966 -12.536 14.162 Atomic orbital electron populations 1.30613 1.29109 1.11673 1.11035 1.04883 0.77680 0.73994 0.73151 1.93597 1.77547 1.37877 1.85804 1.93597 1.77539 1.61645 1.62045 1.57535 1.84053 1.14768 1.26876 1.22015 1.01901 0.92183 0.86116 1.21701 0.98581 0.82068 0.99432 1.58173 1.86462 1.12278 1.27509 1.00608 0.76456 0.72264 0.69247 1.93357 1.84583 1.63114 1.58231 1.93354 1.84580 1.36447 1.84904 1.30568 1.18159 1.57788 1.08747 0.87953 1.24744 1.01521 0.89176 0.93003 1.69881 1.38446 1.34469 1.04775 0.86209 0.81622 0.79565 0.78217 1.18865 1.20160 1.18860 1.21624 0.98631 0.94665 0.86874 1.21920 1.01971 0.78885 0.99426 0.85840 0.85347 0.85344 0.89721 0.88576 0.92049 0.87809 0.89801 0.92089 0.87778 0.88593 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.70 10.99 101.05 1.11 -3.59 16 2 S 2.61 28.39 6.06 -107.50 -0.65 27.74 16 3 O -0.96 -13.13 16.69 -57.54 -0.96 -14.09 16 4 O -0.96 -13.14 16.70 -57.54 -0.96 -14.10 16 5 N -0.99 -12.17 3.19 -113.00 -0.36 -12.53 16 6 C 0.10 1.34 6.52 -3.37 -0.02 1.32 16 7 C 0.11 1.64 6.56 -3.37 -0.02 1.61 16 8 N -1.01 -18.44 3.26 -113.00 -0.37 -18.81 16 9 S 2.71 67.92 4.98 -107.50 -0.53 67.38 16 10 O -1.00 -27.70 16.71 -57.17 -0.96 -28.66 16 11 O -1.00 -27.70 16.71 -57.17 -0.96 -28.65 16 12 C -1.02 -26.67 9.75 30.60 0.30 -26.38 16 13 H 0.10 2.44 7.81 -52.49 -0.41 2.03 16 14 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 15 N -0.85 -24.22 13.19 55.43 0.73 -23.49 16 16 Si 0.92 20.10 29.54 -169.99 -5.02 15.08 16 17 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 20 C 0.11 1.63 6.55 -3.60 -0.02 1.61 16 21 C 0.10 1.34 6.48 -3.60 -0.02 1.32 16 22 H 0.12 0.67 8.14 -51.92 -0.42 0.24 16 23 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 24 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.10 1.00 7.05 -51.93 -0.37 0.64 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.65 7.09 -51.93 -0.37 1.28 16 29 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.65 7.09 -51.92 -0.37 1.28 16 32 H 0.10 1.00 7.06 -51.93 -0.37 0.63 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -37.63 302.07 -8.24 -45.87 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.97 Total: 0.30 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 1.22 Total: -20.59 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.00 Total: -54.83 kcal Atomic # 8 Polarization: -81.67 SS G_CDS: -3.83 Total: -85.50 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 96.31 SS G_CDS: -1.19 Total: 95.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.63 -8.24 -45.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062096919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.959 kcal (2) G-P(sol) polarization free energy of solvation -37.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds