Wall clock time and date at job start Tue Mar 31 2020 03:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.46966 * 120.59481 * 269.71752 * 5 2 1 7 7 C 1.53809 * 108.39573 * 124.75884 * 6 5 2 8 8 N 1.46967 * 108.57845 * 49.63953 * 7 6 5 9 9 S 1.65601 * 120.59553 * 124.62350 * 8 7 6 10 10 O 1.42106 * 106.40027 * 23.56084 * 9 8 7 11 11 O 1.42093 * 106.40660 * 156.48023 * 9 8 7 12 12 C 1.76198 * 107.21742 * 270.02540 * 9 8 7 13 13 H 1.08000 * 120.00478 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99829 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00303 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99955 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47195 * 59.99649 * 16 14 12 18 18 H 1.48503 * 109.47082 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46727 * 299.99881 * 16 14 12 20 20 C 1.46963 * 118.81066 * 304.64532 * 8 7 6 21 21 C 1.46967 * 120.59273 * 90.00120 * 5 2 1 22 22 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 23 23 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 24 24 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 25 25 H 1.08999 * 109.61091 * 244.54334 * 6 5 2 26 26 H 1.09005 * 109.60534 * 5.05581 * 6 5 2 27 27 H 1.09003 * 109.74363 * 289.85133 * 7 6 5 28 28 H 1.08999 * 109.53325 * 169.30427 * 7 6 5 29 29 H 0.96993 * 120.00001 * 180.02562 * 15 14 12 30 30 H 1.08999 * 109.61092 * 295.48073 * 20 8 7 31 31 H 1.09012 * 109.60819 * 174.97029 * 20 8 7 32 32 H 1.08999 * 109.60945 * 354.94740 * 21 5 2 33 33 H 1.09003 * 109.60876 * 115.45796 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4198 0.3187 2.6289 7 6 1.4990 -0.1352 3.7743 8 7 1.6857 -1.5781 3.9814 9 16 2.1000 -2.1691 5.4718 10 8 1.6732 -1.2006 6.4202 11 8 1.6732 -3.5242 5.4991 12 6 3.8599 -2.1999 5.5498 13 1 4.4439 -1.8655 4.7052 14 6 4.4917 -2.6521 6.6889 15 7 3.7806 -3.0600 7.7174 16 14 6.3576 -2.6856 6.7714 17 1 6.8858 -1.3096 6.5904 18 1 6.7853 -3.2096 8.0934 19 1 6.8849 -3.5636 5.6961 20 6 1.4985 -2.4872 2.8419 21 6 2.4138 -2.0340 1.6978 22 1 -0.3634 0.3787 -0.9553 23 1 -0.3633 -1.0168 0.1497 24 1 -0.3633 0.6380 0.8056 25 1 3.4592 0.2816 2.9549 26 1 2.1629 1.3355 2.3319 27 1 0.4600 0.0655 3.5129 28 1 1.7598 0.4020 4.6861 29 1 4.2251 -3.3777 8.5188 30 1 0.4595 -2.4540 2.5142 31 1 1.7590 -3.5035 3.1381 32 1 2.1530 -2.5711 0.7860 33 1 3.4528 -2.2346 1.9592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062096919.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:41 Heat of formation + Delta-G solvation = -180.092503 kcal Electronic energy + Delta-G solvation = -21490.879599 eV Core-core repulsion = 17997.418339 eV Total energy + Delta-G solvation = -3493.461260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 298.054 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -39.34786 -38.18828 -37.44532 -36.97006 -36.11688 -35.20987 -34.46511 -32.23929 -30.21464 -28.22534 -27.18020 -24.87847 -22.40792 -20.75990 -19.96334 -19.27654 -18.54509 -17.73623 -17.27438 -17.20078 -16.93997 -16.66174 -16.00230 -15.60320 -15.25197 -15.18821 -15.00956 -14.08222 -13.95325 -13.90647 -13.68338 -13.57295 -13.28837 -13.14087 -13.04756 -12.99997 -12.59415 -12.58892 -12.46639 -12.33847 -12.30225 -12.09521 -12.00749 -11.49006 -11.23052 -11.03581 -10.47578 -9.45115 -8.72532 -7.45501 -0.65384 0.31785 1.34230 1.35144 1.47984 1.65146 2.20513 2.59321 2.85313 3.00694 3.19464 3.63293 3.80518 3.98174 4.11807 4.14838 4.28870 4.30982 4.36279 4.45861 4.61146 4.69160 4.79127 4.82312 5.02352 5.05514 5.21315 5.26726 5.44383 5.55894 5.93241 5.99019 6.81122 8.21526 Molecular weight = 298.05amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.005347 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.889976 B = 5235.286088 C = 5664.700595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.615 3.385 3 O -0.992 6.992 4 O -0.992 6.992 5 N -0.998 5.998 6 C 0.108 3.892 7 C 0.101 3.899 8 N -1.006 6.006 9 S 2.720 3.280 10 O -1.039 7.039 11 O -1.039 7.039 12 C -1.038 5.038 13 H 0.116 0.884 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.983 3.017 17 H -0.253 1.253 18 H -0.265 1.265 19 H -0.253 1.253 20 C 0.101 3.899 21 C 0.108 3.892 22 H 0.147 0.853 23 H 0.147 0.853 24 H 0.147 0.853 25 H 0.067 0.933 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.298 0.702 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 5.870 -14.815 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.713 3.287 3 O -0.982 6.982 4 O -0.982 6.982 5 N -0.835 5.835 6 C -0.019 4.019 7 C -0.026 4.026 8 N -0.845 5.845 9 S 2.822 3.178 10 O -1.029 7.029 11 O -1.029 7.029 12 C -1.171 5.171 13 H 0.134 0.866 14 C -0.140 4.140 15 N -0.526 5.526 16 Si 0.802 3.198 17 H -0.177 1.177 18 H -0.189 1.189 19 H -0.176 1.176 20 C -0.026 4.026 21 C -0.019 4.019 22 H 0.165 0.835 23 H 0.166 0.834 24 H 0.166 0.834 25 H 0.086 0.914 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.687 5.803 -14.649 16.751 hybrid contribution 0.876 -0.257 0.647 1.119 sum -4.811 5.546 -14.001 15.810 Atomic orbital electron populations 1.30378 1.23030 1.13723 1.13296 1.04616 0.79592 0.72579 0.71939 1.93553 1.79675 1.39107 1.85896 1.93553 1.79669 1.62285 1.62728 1.57506 1.84970 1.14165 1.26824 1.21956 1.00565 0.93628 0.85790 1.22029 1.01348 0.79553 0.99623 1.57619 1.86204 1.14338 1.26309 0.99996 0.76089 0.71302 0.70445 1.93297 1.84889 1.63704 1.61007 1.93295 1.84884 1.38485 1.86226 1.30987 1.19538 1.57337 1.09275 0.86564 1.25916 1.07060 0.88436 0.92547 1.69974 1.40767 1.36040 1.05781 0.85252 0.75132 0.80333 0.79049 1.17654 1.18928 1.17645 1.21951 1.01400 0.93191 0.86020 1.21862 1.00639 0.79743 0.99694 0.83515 0.83409 0.83408 0.91411 0.85843 0.88244 0.89529 0.89203 0.88280 0.89493 0.85844 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 204. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.67 10.99 113.37 1.25 -4.42 16 2 S 2.61 49.68 6.06 -56.49 -0.34 49.34 16 3 O -0.99 -25.20 16.69 -127.65 -2.13 -27.33 16 4 O -0.99 -25.20 16.70 -127.65 -2.13 -27.34 16 5 N -1.00 -22.13 3.19 -511.44 -1.63 -23.76 16 6 C 0.11 2.58 6.52 86.56 0.56 3.14 16 7 C 0.10 2.85 6.56 86.56 0.57 3.42 16 8 N -1.01 -36.09 3.26 -511.44 -1.67 -37.76 16 9 S 2.72 139.25 4.98 -56.49 -0.28 138.96 16 10 O -1.04 -59.12 16.71 -128.00 -2.14 -61.25 16 11 O -1.04 -59.10 16.71 -128.00 -2.14 -61.24 16 12 C -1.04 -55.30 9.75 67.73 0.66 -54.64 16 13 H 0.12 5.61 7.81 -2.91 -0.02 5.59 16 14 C 0.07 4.01 5.46 84.65 0.46 4.47 16 15 N -0.89 -52.54 13.19 21.45 0.28 -52.26 16 16 Si 0.98 40.95 29.54 68.60 2.03 42.97 16 17 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 20 C 0.10 2.84 6.55 86.41 0.57 3.41 16 21 C 0.11 2.57 6.48 86.41 0.56 3.13 16 22 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.12 2.27 7.05 -2.38 -0.02 2.26 16 27 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 2.74 7.09 -2.39 -0.02 2.73 16 29 H 0.30 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.09 2.75 7.09 -2.38 -0.02 2.74 16 32 H 0.12 2.27 7.06 -2.39 -0.02 2.25 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -84.22 302.07 -4.40 -88.63 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 1.12 Total: 12.53 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 4.63 Total: -41.50 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -3.02 Total: -113.78 kcal Atomic # 8 Polarization: -168.62 SS G_CDS: -8.54 Total: -177.16 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 188.93 SS G_CDS: -0.62 Total: 188.31 kcal Total: -84.22 -4.40 -88.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062096919.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.467 kcal (2) G-P(sol) polarization free energy of solvation -84.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds