Wall clock time and date at job start Tue Mar 31 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.46901 * 2 1 4 4 N 1.29394 * 124.70993 * 90.02762 * 3 2 1 5 5 C 1.30914 * 117.46915 * 179.97438 * 4 3 2 6 6 C 1.36760 * 113.93133 * 0.25091 * 5 4 3 7 7 C 1.46497 * 126.17608 * 179.74995 * 6 5 4 8 8 O 1.21617 * 120.00098 * 359.97438 * 7 6 5 9 9 O 1.34877 * 119.99915 * 179.97438 * 7 6 5 10 10 C 1.45205 * 116.99886 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47072 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00290 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00070 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99804 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47003 * 179.97438 * 14 13 11 16 16 H 1.08007 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00312 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99623 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00215 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47022 * 119.99959 * 19 17 15 22 22 H 1.48497 * 109.47266 * 240.00038 * 19 17 15 23 23 S 1.70932 * 124.70517 * 269.98297 * 3 2 1 24 24 H 1.09005 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47013 * 300.00030 * 1 2 3 26 26 H 1.08994 * 109.47265 * 60.00139 * 1 2 3 27 27 H 1.09001 * 109.46733 * 239.99882 * 2 1 3 28 28 H 1.08994 * 109.47265 * 119.99861 * 2 1 3 29 29 H 1.08002 * 123.02987 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.46951 * 300.00138 * 10 9 7 31 31 H 1.08996 * 109.47049 * 60.00141 * 10 9 7 32 32 H 0.96992 * 120.00256 * 359.97438 * 13 11 10 33 33 H 1.09000 * 109.47381 * 299.99553 * 14 13 11 34 34 H 1.08996 * 109.47299 * 59.99972 * 14 13 11 35 35 H 0.97009 * 119.99767 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1153 1.0637 5 6 2.7116 3.3396 0.8987 6 6 2.8372 3.7118 -0.4113 7 6 3.2918 5.0159 -0.8999 8 8 3.5991 5.8879 -0.1099 9 8 3.3694 5.2495 -2.2261 10 6 3.8284 6.5641 -2.6381 11 6 3.8495 6.6398 -4.1430 12 8 3.5115 5.6803 -4.8034 13 7 4.2450 7.7735 -4.7551 14 6 4.2650 7.8473 -6.2182 15 6 4.7415 9.2116 -6.6458 16 1 5.0029 9.9499 -5.9022 17 6 4.8438 9.5172 -7.9864 18 7 4.5250 8.6183 -8.8919 19 14 5.4337 11.2084 -8.5165 20 1 5.7260 12.0300 -7.3145 21 1 6.6668 11.0694 -9.3321 22 1 4.3780 11.8703 -9.3242 23 16 2.3571 2.3382 -1.4052 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.9443 3.9978 1.7227 30 1 3.1528 7.3242 -2.2458 31 1 4.8328 6.7359 -2.2512 32 1 4.5157 8.5408 -4.2271 33 1 4.9397 7.0868 -6.6112 34 1 3.2602 7.6763 -6.6044 35 1 4.5973 8.8332 -9.8351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065643226.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:27 Heat of formation + Delta-G solvation = -109.026336 kcal Electronic energy + Delta-G solvation = -20271.262134 eV Core-core repulsion = 16781.271678 eV Total energy + Delta-G solvation = -3489.990456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84015 -40.86819 -40.26384 -37.63406 -36.20134 -35.01617 -34.43089 -31.66839 -30.54192 -28.58549 -27.19381 -24.88051 -24.12226 -23.34403 -21.68795 -20.79960 -19.79863 -19.22142 -18.21585 -18.01145 -17.95446 -17.19087 -16.98214 -16.38266 -16.21410 -15.82606 -15.70000 -15.11918 -14.84308 -14.56399 -14.51990 -14.11838 -13.85991 -13.71906 -13.27962 -12.92272 -12.76420 -12.73713 -12.60994 -12.23119 -12.17046 -12.02786 -11.95103 -11.47612 -10.96958 -10.86366 -10.83848 -10.72127 -10.08080 -9.94931 -8.30424 -6.46745 -1.06527 0.01126 0.47753 1.00919 1.07488 1.44536 1.44667 1.51871 1.58456 1.73986 2.31646 2.51549 2.94358 3.05081 3.52743 3.68218 3.78924 3.98181 4.01125 4.03345 4.24271 4.27237 4.64360 4.90462 4.95382 4.99450 5.05981 5.08625 5.21128 5.32851 5.40399 5.61546 5.81346 6.32471 6.40271 6.62143 6.75304 7.19177 7.33707 8.81881 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.002447 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.019349 B =11440.402322 C =12106.080784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C 0.070 3.930 4 N -0.499 5.499 5 C 0.150 3.850 6 C -0.327 4.327 7 C 0.552 3.448 8 O -0.511 6.511 9 O -0.345 6.345 10 C 0.061 3.939 11 C 0.500 3.500 12 O -0.582 6.582 13 N -0.697 5.697 14 C 0.266 3.734 15 C -0.556 4.556 16 H 0.086 0.914 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.279 1.279 23 S 0.232 5.768 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.205 0.795 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.413 0.587 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 -14.069 20.475 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.203 4.203 4 N -0.213 5.213 5 C -0.012 4.012 6 C -0.450 4.450 7 C 0.396 3.604 8 O -0.402 6.402 9 O -0.260 6.260 10 C -0.015 4.015 11 C 0.286 3.714 12 O -0.462 6.462 13 N -0.349 5.349 14 C 0.144 3.856 15 C -0.593 4.593 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.808 3.192 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 S 0.492 5.508 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.221 0.779 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.250 0.750 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.650 -14.994 19.375 25.142 hybrid contribution 0.646 1.849 0.181 1.967 sum -5.004 -13.145 19.556 24.089 Atomic orbital electron populations 1.21807 0.92254 1.04206 1.02305 1.20619 0.97537 0.84997 1.06465 1.28423 0.97555 1.03116 0.91192 1.66348 1.17189 1.06007 1.31782 1.22810 0.92305 0.91445 0.94591 1.24896 1.22540 0.98876 0.98649 1.19530 0.74216 0.86429 0.80240 1.90881 1.47043 1.45627 1.56666 1.86624 1.78315 1.36266 1.24819 1.22842 1.04648 0.83022 0.91026 1.20612 0.77667 0.83156 0.89989 1.90691 1.49719 1.37875 1.67950 1.46029 1.65328 1.14600 1.08937 1.18644 0.94936 0.96800 0.75234 1.21639 1.46207 0.98303 0.93197 0.89574 1.26049 0.94894 1.02223 0.96415 1.70138 1.48239 1.36664 1.01786 0.85105 0.77645 0.77743 0.78689 1.17648 1.20530 1.20520 1.84579 1.55283 1.01711 1.09219 0.88880 0.92758 0.92456 0.86993 0.87116 0.77851 0.85341 0.85320 0.75045 0.98877 0.98885 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 71.98 0.71 -0.49 16 2 C -0.06 -0.51 6.51 29.85 0.19 -0.31 16 3 C 0.07 1.15 6.63 88.47 0.59 1.74 16 4 N -0.50 -9.87 10.50 -189.53 -1.99 -11.86 16 5 C 0.15 3.09 11.16 84.48 0.94 4.03 16 6 C -0.33 -7.83 6.52 24.08 0.16 -7.67 16 7 C 0.55 15.50 7.93 69.97 0.55 16.06 16 8 O -0.51 -15.12 16.67 19.45 0.32 -14.80 16 9 O -0.34 -10.89 9.65 -51.52 -0.50 -11.39 16 10 C 0.06 1.76 5.96 71.23 0.42 2.18 16 11 C 0.50 19.84 7.91 87.66 0.69 20.53 16 12 O -0.58 -28.95 16.50 15.75 0.26 -28.69 16 13 N -0.70 -28.42 5.55 -466.79 -2.59 -31.01 16 14 C 0.27 14.23 5.43 85.63 0.46 14.70 16 15 C -0.56 -29.47 9.28 25.60 0.24 -29.24 16 16 H 0.09 4.11 7.60 -2.91 -0.02 4.08 16 17 C 0.00 0.22 5.46 84.65 0.46 0.68 16 18 N -0.93 -55.19 13.29 21.45 0.28 -54.90 16 19 Si 0.98 41.66 29.54 68.60 2.03 43.68 16 20 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 S 0.23 4.69 23.04 -56.49 -1.30 3.39 16 24 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.41 13.46 8.32 -92.71 -0.77 12.69 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -74.49 334.28 2.30 -72.19 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.36 Total: 11.20 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 5.43 Total: 22.20 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -4.29 Total: -97.77 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: 0.09 Total: -54.88 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -74.49 2.30 -72.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065643226.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.838 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds