Wall clock time and date at job start Tue Mar 31 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.34976 * 116.99719 * 2 1 4 4 O 1.21708 * 119.99888 * 359.72211 * 3 2 1 5 5 C 1.41472 * 120.00356 * 179.97438 * 3 2 1 6 6 S 1.75816 * 125.48361 * 359.74700 * 5 3 2 7 7 C 1.70560 * 91.68792 * 180.02562 * 6 5 3 8 8 C 1.33577 * 111.21110 * 359.97438 * 7 6 5 9 9 C 1.37538 * 125.49068 * 179.44752 * 5 3 2 10 10 N 1.39505 * 123.50611 * 359.97367 * 9 5 3 11 11 C 1.34773 * 119.99785 * 172.41860 * 10 9 5 12 12 O 1.21286 * 120.00173 * 5.12084 * 11 10 9 13 13 C 1.50700 * 120.00197 * 185.12649 * 11 10 9 14 14 N 1.46496 * 109.47667 * 179.97438 * 13 11 10 15 15 C 1.46498 * 119.99908 * 89.99876 * 14 13 11 16 16 C 1.36938 * 120.00264 * 270.00486 * 14 13 11 17 17 H 1.08000 * 119.99812 * 24.60734 * 16 14 13 18 18 C 1.38817 * 120.00240 * 204.61088 * 16 14 13 19 19 N 1.31621 * 119.99600 * 7.05438 * 18 16 14 20 20 Si 1.86798 * 119.99993 * 187.05172 * 18 16 14 21 21 H 1.48497 * 109.47433 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47157 * 120.00028 * 20 18 16 23 23 H 1.48501 * 109.46980 * 240.00156 * 20 18 16 24 24 H 1.08995 * 109.47394 * 299.99614 * 1 2 3 25 25 H 1.08999 * 109.47056 * 60.00342 * 1 2 3 26 26 H 1.09003 * 109.46302 * 179.97438 * 1 2 3 27 27 H 1.08004 * 124.39038 * 179.97438 * 7 6 5 28 28 H 1.08001 * 122.45429 * 179.97438 * 8 7 6 29 29 H 0.96992 * 119.99928 * 352.41311 * 10 9 5 30 30 H 1.09001 * 109.47039 * 300.00015 * 13 11 10 31 31 H 1.09000 * 109.47022 * 59.99804 * 13 11 10 32 32 H 1.08997 * 109.47247 * 95.06334 * 15 14 13 33 33 H 1.09009 * 109.47349 * 215.05878 * 15 14 13 34 34 H 1.08998 * 109.47613 * 335.05681 * 15 14 13 35 35 H 0.97002 * 119.99596 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3788 2.2234 -0.0051 5 6 3.4545 1.2769 0.0005 6 16 4.5488 -0.0993 0.0076 7 6 5.9145 0.9225 0.0045 8 6 5.5554 2.2091 -0.0020 9 6 4.1932 2.4370 -0.0102 10 7 3.6256 3.7113 -0.0238 11 6 4.4081 4.7991 0.1203 12 8 5.6138 4.6767 0.1684 13 6 3.7850 6.1675 0.2216 14 7 4.8387 7.1740 0.3719 15 6 5.4288 7.7995 -0.8142 16 6 5.2723 7.5303 1.6211 17 1 5.1623 6.8433 2.4471 18 6 5.8531 8.7744 1.8257 19 7 5.8622 9.6639 0.8555 20 14 6.6217 9.1860 3.4777 21 1 6.4810 8.0246 4.3923 22 1 8.0615 9.4973 3.2900 23 1 5.9330 10.3637 4.0643 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 6.9368 0.5743 0.0074 28 1 6.2775 3.0123 -0.0045 29 1 2.6678 3.8144 -0.1370 30 1 3.2116 6.3734 -0.6822 31 1 3.1237 6.2023 1.0874 32 1 4.9201 8.7414 -1.0193 33 1 6.4873 7.9896 -0.6362 34 1 5.3182 7.1330 -1.6695 35 1 6.2684 10.5331 0.9984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072063176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:03 Heat of formation + Delta-G solvation = -45.011244 kcal Electronic energy + Delta-G solvation = -21645.646443 eV Core-core repulsion = 18158.431889 eV Total energy + Delta-G solvation = -3487.214554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88614 -39.89179 -37.54050 -36.40952 -35.14026 -33.76860 -31.32966 -30.48754 -28.00264 -27.17535 -25.86171 -24.52333 -22.32671 -22.01991 -20.37805 -19.45815 -18.55905 -17.43001 -16.98610 -16.74252 -16.60122 -15.55877 -15.27119 -14.95557 -14.76227 -14.24057 -13.81331 -13.65402 -13.47804 -13.34122 -13.07902 -12.66083 -12.60924 -12.15354 -11.81731 -11.32713 -11.06009 -10.90967 -10.88804 -10.74898 -10.66532 -10.47155 -10.42101 -10.00440 -9.95726 -9.26490 -8.89520 -8.57446 -7.83366 -6.84894 -5.77337 -3.26829 0.28578 1.45726 1.85516 2.21495 2.72775 2.75986 3.32291 3.38117 3.42300 3.44975 3.48181 4.46900 4.74184 4.94302 5.02581 5.04352 5.09822 5.32091 5.38848 5.45540 5.53505 5.74730 6.00601 6.03711 6.13780 6.26081 6.31153 6.73653 6.77248 7.39791 7.62564 7.68353 7.73082 7.79767 8.31009 8.57921 9.16753 9.75702 10.23091 11.27469 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.003707 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.073627 B = 7552.324597 C = 8037.341135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.553 3.447 4 O -0.522 6.522 5 C -0.360 4.360 6 S 0.217 5.783 7 C -0.195 4.195 8 C -0.181 4.181 9 C 0.270 3.730 10 N -0.652 5.652 11 C 0.474 3.526 12 O -0.492 6.492 13 C 0.137 3.863 14 N -0.572 5.572 15 C 0.164 3.836 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.007 3.993 19 N -0.907 5.907 20 Si 0.911 3.089 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.289 1.289 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.174 0.826 28 H 0.191 0.809 29 H 0.423 0.577 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.047 0.953 34 H -0.004 1.004 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -20.323 -3.738 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.402 3.598 4 O -0.414 6.414 5 C -0.482 4.482 6 S 0.482 5.518 7 C -0.333 4.333 8 C -0.213 4.213 9 C 0.153 3.847 10 N -0.299 5.299 11 C 0.260 3.740 12 O -0.363 6.363 13 C 0.003 3.997 14 N -0.291 5.291 15 C 0.019 3.981 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.740 3.260 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.191 0.809 28 H 0.207 0.793 29 H 0.265 0.735 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.014 0.986 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.694 -21.299 -3.682 22.628 hybrid contribution 0.144 1.728 0.810 1.914 sum -6.550 -19.571 -2.872 20.837 Atomic orbital electron populations 1.22872 0.76770 1.03496 1.02561 1.86182 1.23348 1.32551 1.85014 1.18149 0.87051 0.81673 0.72964 1.90770 1.66271 1.35455 1.48886 1.21715 0.94672 0.97644 1.34153 1.82926 0.92699 1.05910 1.70274 1.25474 1.05076 0.97986 1.04765 1.20973 0.95389 0.98810 1.06173 1.17553 0.91903 0.84910 0.90347 1.44538 1.13742 1.02830 1.68838 1.24427 0.88343 0.87647 0.73544 1.90438 1.15093 1.85422 1.45389 1.20718 0.92032 0.84879 1.02077 1.43643 1.39672 1.41537 1.04261 1.20899 0.98619 0.93932 0.84602 1.19205 1.35867 0.97312 0.86162 0.91431 1.25060 1.00863 0.95389 0.97802 1.70071 1.47696 1.05851 1.31480 0.86091 0.78755 0.77970 0.83158 1.20255 1.21490 1.21537 0.92058 0.92094 0.88177 0.80873 0.79263 0.73543 0.90552 0.89407 0.94500 0.93401 0.98569 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.45 101.05 1.06 1.37 16 2 O -0.35 -4.16 10.23 -41.25 -0.42 -4.59 16 3 C 0.55 7.78 7.72 31.96 0.25 8.03 16 4 O -0.52 -8.09 14.26 -19.43 -0.28 -8.37 16 5 C -0.36 -5.09 6.28 -38.61 -0.24 -5.34 16 6 S 0.22 2.35 22.82 -107.50 -2.45 -0.10 16 7 C -0.19 -2.27 10.89 29.10 0.32 -1.95 16 8 C -0.18 -2.76 9.09 -41.26 -0.37 -3.14 16 9 C 0.27 4.30 6.63 -84.67 -0.56 3.74 16 10 N -0.65 -10.84 5.32 -10.46 -0.06 -10.90 16 11 C 0.47 9.27 7.85 -10.99 -0.09 9.19 16 12 O -0.49 -11.09 13.21 5.55 0.07 -11.02 16 13 C 0.14 2.74 6.13 -5.20 -0.03 2.71 16 14 N -0.57 -14.54 2.41 -182.50 -0.44 -14.98 16 15 C 0.16 4.11 8.96 59.85 0.54 4.65 16 16 C -0.26 -7.14 9.66 -15.06 -0.15 -7.29 16 17 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 18 C 0.01 0.20 5.21 -17.43 -0.09 0.11 16 19 N -0.91 -26.33 10.50 55.49 0.58 -25.74 16 20 Si 0.91 22.16 29.56 -169.99 -5.02 17.13 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.17 1.49 8.06 -52.48 -0.42 1.06 16 28 H 0.19 3.36 5.23 -52.52 -0.27 3.09 16 29 H 0.42 6.50 6.28 -40.82 -0.26 6.24 16 30 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 32 H 0.04 0.97 7.34 -51.93 -0.38 0.59 16 33 H 0.05 1.31 7.28 -51.92 -0.38 0.94 16 34 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -32.70 317.38 -6.39 -39.09 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -3.78 Total: 2.61 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.62 Total: 12.09 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.09 Total: -51.62 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.63 Total: -23.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.45 Total: -0.10 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.70 -6.39 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072063176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.922 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds