Wall clock time and date at job start Tue Mar 31 2020 03:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.34976 * 116.99719 * 2 1 4 4 O 1.21708 * 119.99888 * 359.72211 * 3 2 1 5 5 C 1.41472 * 120.00356 * 179.97438 * 3 2 1 6 6 S 1.75816 * 125.48361 * 359.74700 * 5 3 2 7 7 C 1.70560 * 91.68792 * 180.02562 * 6 5 3 8 8 C 1.33577 * 111.21110 * 359.97438 * 7 6 5 9 9 C 1.37538 * 125.49068 * 179.44752 * 5 3 2 10 10 N 1.39505 * 123.50611 * 359.97367 * 9 5 3 11 11 C 1.34773 * 119.99785 * 172.41860 * 10 9 5 12 12 O 1.21286 * 120.00173 * 5.12084 * 11 10 9 13 13 C 1.50700 * 120.00197 * 185.12649 * 11 10 9 14 14 N 1.46496 * 109.47667 * 179.97438 * 13 11 10 15 15 C 1.46498 * 119.99908 * 89.99876 * 14 13 11 16 16 C 1.36938 * 120.00264 * 270.00486 * 14 13 11 17 17 H 1.08000 * 119.99812 * 24.60734 * 16 14 13 18 18 C 1.38817 * 120.00240 * 204.61088 * 16 14 13 19 19 N 1.31621 * 119.99600 * 7.05438 * 18 16 14 20 20 Si 1.86798 * 119.99993 * 187.05172 * 18 16 14 21 21 H 1.48497 * 109.47433 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47157 * 120.00028 * 20 18 16 23 23 H 1.48501 * 109.46980 * 240.00156 * 20 18 16 24 24 H 1.08995 * 109.47394 * 299.99614 * 1 2 3 25 25 H 1.08999 * 109.47056 * 60.00342 * 1 2 3 26 26 H 1.09003 * 109.46302 * 179.97438 * 1 2 3 27 27 H 1.08004 * 124.39038 * 179.97438 * 7 6 5 28 28 H 1.08001 * 122.45429 * 179.97438 * 8 7 6 29 29 H 0.96992 * 119.99928 * 352.41311 * 10 9 5 30 30 H 1.09001 * 109.47039 * 300.00015 * 13 11 10 31 31 H 1.09000 * 109.47022 * 59.99804 * 13 11 10 32 32 H 1.08997 * 109.47247 * 95.06334 * 15 14 13 33 33 H 1.09009 * 109.47349 * 215.05878 * 15 14 13 34 34 H 1.08998 * 109.47613 * 335.05681 * 15 14 13 35 35 H 0.97002 * 119.99596 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3788 2.2234 -0.0051 5 6 3.4545 1.2769 0.0005 6 16 4.5488 -0.0993 0.0076 7 6 5.9145 0.9225 0.0045 8 6 5.5554 2.2091 -0.0020 9 6 4.1932 2.4370 -0.0102 10 7 3.6256 3.7113 -0.0238 11 6 4.4081 4.7991 0.1203 12 8 5.6138 4.6767 0.1684 13 6 3.7850 6.1675 0.2216 14 7 4.8387 7.1740 0.3719 15 6 5.4288 7.7995 -0.8142 16 6 5.2723 7.5303 1.6211 17 1 5.1623 6.8433 2.4471 18 6 5.8531 8.7744 1.8257 19 7 5.8622 9.6639 0.8555 20 14 6.6217 9.1860 3.4777 21 1 6.4810 8.0246 4.3923 22 1 8.0615 9.4973 3.2900 23 1 5.9330 10.3637 4.0643 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 6.9368 0.5743 0.0074 28 1 6.2775 3.0123 -0.0045 29 1 2.6678 3.8144 -0.1370 30 1 3.2116 6.3734 -0.6822 31 1 3.1237 6.2023 1.0874 32 1 4.9201 8.7414 -1.0193 33 1 6.4873 7.9896 -0.6362 34 1 5.3182 7.1330 -1.6695 35 1 6.2684 10.5331 0.9984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072063176.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:03 Heat of formation + Delta-G solvation = -66.395223 kcal Electronic energy + Delta-G solvation = -21646.573722 eV Core-core repulsion = 18158.431889 eV Total energy + Delta-G solvation = -3488.141833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02857 -41.12696 -38.82619 -37.47587 -37.00114 -35.10478 -33.33595 -31.55646 -29.42981 -28.29258 -27.91205 -25.70115 -23.87704 -23.25560 -21.93073 -20.61391 -19.63904 -18.96481 -18.48327 -18.14529 -17.57076 -17.03804 -16.52672 -16.45042 -16.20067 -15.64945 -15.33488 -15.01013 -14.80509 -14.62470 -14.53486 -13.89063 -13.83819 -13.57090 -13.16566 -12.92249 -12.83313 -12.64528 -12.35212 -12.08836 -12.05979 -11.90800 -11.78535 -11.75139 -11.70031 -10.89008 -10.59038 -9.93093 -8.92198 -8.86289 -7.88042 -5.40014 -0.79201 0.46390 0.84229 1.08374 1.44106 1.45791 1.49581 1.56336 1.80339 2.03908 2.11254 2.48964 3.27520 3.59776 3.69035 3.99646 4.03122 4.27858 4.35494 4.37126 4.47614 4.58570 4.62425 4.74846 4.78073 4.95747 5.04727 5.26773 5.31521 5.52295 5.57876 5.67412 6.23512 6.40652 6.62096 7.06670 7.12702 7.74603 8.17767 9.15474 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.003707 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.073627 B = 7552.324597 C = 8037.341135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.550 3.450 4 O -0.542 6.542 5 C -0.377 4.377 6 S 0.314 5.686 7 C -0.180 4.180 8 C -0.216 4.216 9 C 0.239 3.761 10 N -0.645 5.645 11 C 0.482 3.518 12 O -0.529 6.529 13 C 0.133 3.867 14 N -0.593 5.593 15 C 0.181 3.819 16 C -0.265 4.265 17 H 0.062 0.938 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.283 1.283 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.136 0.864 27 H 0.207 0.793 28 H 0.161 0.839 29 H 0.428 0.572 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.021 0.979 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.956 -23.462 -3.437 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.399 3.601 4 O -0.436 6.436 5 C -0.498 4.498 6 S 0.580 5.420 7 C -0.319 4.319 8 C -0.248 4.248 9 C 0.123 3.877 10 N -0.293 5.293 11 C 0.269 3.731 12 O -0.403 6.403 13 C 0.001 3.999 14 N -0.313 5.313 15 C 0.036 3.964 16 C -0.394 4.394 17 H 0.080 0.920 18 C -0.241 4.241 19 N -0.580 5.580 20 Si 0.800 3.200 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.210 1.210 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.224 0.776 28 H 0.178 0.822 29 H 0.270 0.730 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.039 0.961 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.484 -24.534 -3.388 25.873 hybrid contribution 0.264 2.375 0.668 2.481 sum -7.220 -22.159 -2.721 23.464 Atomic orbital electron populations 1.23213 0.74874 1.05868 1.02520 1.86166 1.25170 1.31055 1.84442 1.18253 0.87150 0.82096 0.72571 1.90750 1.66812 1.36318 1.49752 1.22027 0.95588 0.98839 1.33334 1.82627 0.89898 1.02742 1.66710 1.25874 1.07442 0.96996 1.01589 1.20701 0.94788 0.99658 1.09679 1.17684 0.92513 0.84726 0.92760 1.44069 1.13504 1.02933 1.68803 1.23756 0.87790 0.88129 0.73421 1.90461 1.16398 1.86049 1.47439 1.20936 0.91070 0.83874 1.03973 1.43764 1.41112 1.43055 1.03395 1.20593 0.96282 0.93921 0.85608 1.19412 1.35743 0.97198 0.87094 0.92017 1.25806 1.01789 0.95437 1.01051 1.70212 1.48704 1.05995 1.33088 0.85134 0.77522 0.77796 0.79525 1.19628 1.21740 1.20976 0.92255 0.92056 0.84590 0.77623 0.82173 0.72958 0.87667 0.88377 0.96149 0.96746 0.96046 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.45 113.37 1.18 1.59 16 2 O -0.35 -7.33 10.23 -58.94 -0.60 -7.93 16 3 C 0.55 14.54 7.72 68.62 0.53 15.07 16 4 O -0.54 -16.34 14.26 19.16 0.27 -16.06 16 5 C -0.38 -9.96 6.28 22.90 0.14 -9.82 16 6 S 0.31 5.65 22.82 -56.49 -1.29 4.36 16 7 C -0.18 -3.72 10.89 66.76 0.73 -2.99 16 8 C -0.22 -6.53 9.09 21.18 0.19 -6.33 16 9 C 0.24 7.51 6.63 37.73 0.25 7.76 16 10 N -0.64 -21.56 5.32 -305.40 -1.63 -23.19 16 11 C 0.48 19.19 7.85 87.66 0.69 19.88 16 12 O -0.53 -24.66 13.21 -3.05 -0.04 -24.70 16 13 C 0.13 5.37 6.13 85.63 0.52 5.89 16 14 N -0.59 -30.73 2.41 -731.31 -1.76 -32.49 16 15 C 0.18 9.33 8.96 127.77 1.14 10.47 16 16 C -0.26 -15.06 9.66 84.03 0.81 -14.25 16 17 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 18 C -0.05 -2.61 5.21 84.86 0.44 -2.16 16 19 N -0.93 -55.65 10.50 21.65 0.23 -55.43 16 20 Si 0.97 46.30 29.56 68.60 2.03 48.33 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 24 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 25 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 26 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.21 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.16 5.91 5.23 -3.50 -0.02 5.89 16 29 H 0.43 13.11 6.28 -92.71 -0.58 12.53 16 30 H 0.11 3.58 8.07 -2.39 -0.02 3.56 16 31 H 0.10 3.72 8.04 -2.39 -0.02 3.70 16 32 H 0.02 1.10 7.34 -2.39 -0.02 1.08 16 33 H 0.01 0.79 7.28 -2.38 -0.02 0.78 16 34 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -72.77 317.38 4.40 -68.37 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.55 Total: 13.63 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 6.64 Total: 25.10 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.16 Total: -111.10 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.37 Total: -48.69 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 5.65 SS G_CDS: -1.29 Total: 4.36 kcal Total: -72.77 4.40 -68.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072063176.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.979 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds