Wall clock time and date at job start Tue Mar 31 2020 04:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46492 * 109.47634 * 2 1 4 4 C 1.46503 * 120.00103 * 270.00021 * 3 2 1 5 5 C 1.50695 * 109.47183 * 270.00163 * 4 3 2 6 6 H 1.07998 * 119.99909 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00126 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99553 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00325 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.46825 * 90.00030 * 9 7 5 11 11 H 1.48494 * 109.47164 * 210.00340 * 9 7 5 12 12 H 1.48501 * 109.47084 * 330.00017 * 9 7 5 13 13 C 1.34779 * 120.00359 * 90.00243 * 3 2 1 14 14 O 1.21276 * 120.00271 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99306 * 359.97438 * 13 3 2 16 16 O 1.42904 * 109.46514 * 179.97438 * 15 13 3 17 17 C 1.35940 * 116.99678 * 180.02562 * 16 15 13 18 18 C 1.39056 * 120.47722 * 0.19419 * 17 16 15 19 19 C 1.38596 * 118.38705 * 180.24424 * 18 17 16 20 20 C 1.38205 * 119.24949 * 359.52341 * 19 18 17 21 21 N 1.31883 * 120.89574 * 0.27901 * 20 19 18 22 22 C 1.31916 * 121.76671 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 119.67496 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47840 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46818 * 300.00386 * 1 2 3 26 26 H 1.08995 * 109.47103 * 59.99577 * 1 2 3 27 27 H 1.09009 * 109.46818 * 239.99614 * 2 1 3 28 28 H 1.09002 * 109.46989 * 120.00073 * 2 1 3 29 29 H 1.09008 * 109.46968 * 30.00101 * 4 3 2 30 30 H 1.08998 * 109.46983 * 149.99965 * 4 3 2 31 31 H 0.97005 * 119.99743 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46949 * 60.01015 * 15 13 3 33 33 H 1.08992 * 109.47415 * 300.00189 * 15 13 3 34 34 H 1.07993 * 120.80831 * 0.04528 * 18 17 16 35 35 H 1.08002 * 120.37777 * 179.80807 * 19 18 17 36 36 H 1.07997 * 119.55172 * 180.25856 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8348 -1.7038 6 1 4.3428 1.2306 -1.0958 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1255 -3.6181 9 14 5.9136 2.0963 -3.4170 10 1 5.9774 0.8750 -4.2592 11 1 6.3922 3.2634 -4.2004 12 1 6.7737 1.9175 -2.2197 13 6 2.2431 2.0165 1.1672 14 8 2.6471 3.1600 1.1672 15 6 1.9914 1.3062 2.4723 16 8 2.3017 2.1815 3.5584 17 6 2.1287 1.6915 4.8146 18 6 1.6729 0.3922 5.0082 19 6 1.5071 -0.0612 6.3074 20 6 1.8071 0.7822 7.3604 21 7 2.2416 2.0083 7.1434 22 6 2.4083 2.4802 5.9228 23 17 2.9828 4.1031 5.6998 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6876 -2.0284 30 1 2.0957 3.1409 -1.1384 31 1 3.6751 3.5154 -4.4444 32 1 2.6213 0.4185 2.5302 33 1 0.9434 1.0125 2.5298 34 1 1.4504 -0.2471 4.1668 35 1 1.1519 -1.0638 6.4949 36 1 1.6837 0.4325 8.3747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077493921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:40 Heat of formation + Delta-G solvation = -37.302879 kcal Electronic energy + Delta-G solvation = -21478.460529 eV Core-core repulsion = 17989.536529 eV Total energy + Delta-G solvation = -3488.924000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.087 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93271 -39.38898 -37.95871 -36.57589 -35.41819 -32.89266 -32.47712 -30.90034 -30.24075 -28.90479 -26.63939 -24.01769 -23.50725 -23.14937 -22.36897 -18.84717 -18.63171 -17.30016 -17.16485 -16.64599 -16.30833 -16.09340 -15.51321 -14.79153 -14.69661 -14.50228 -14.11587 -13.83250 -13.60197 -13.24064 -12.91261 -12.44462 -12.16988 -12.09970 -11.78107 -11.72886 -11.46677 -11.24650 -11.20486 -10.98521 -10.83345 -10.60549 -10.18456 -9.99473 -9.98532 -9.70526 -9.06396 -8.57553 -8.48063 -7.81825 -6.09208 -4.14333 0.65367 0.86840 1.80959 2.59716 3.16839 3.27570 3.34441 3.35194 3.39796 3.87615 4.20557 4.32628 4.41235 4.52247 4.72693 4.77580 4.88111 4.94260 5.00292 5.20436 5.25839 5.46910 5.51364 5.60637 5.64463 5.85583 5.97588 6.09560 6.34160 6.79294 7.00266 7.34921 7.42035 7.45410 7.86495 8.16025 8.22821 8.79671 8.94302 9.50985 10.98965 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.003754 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.496713 B = 7457.405338 C = 8248.677468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.511 6.511 15 C 0.036 3.964 16 O -0.267 6.267 17 C 0.105 3.895 18 C -0.160 4.160 19 C -0.127 4.127 20 C 0.070 3.930 21 N -0.442 5.442 22 C 0.143 3.857 23 Cl -0.010 7.010 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -10.602 17.550 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.130 3.870 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.386 6.386 15 C -0.043 4.043 16 O -0.177 6.177 17 C 0.055 3.945 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.088 4.088 21 N -0.153 5.153 22 C -0.022 4.022 23 Cl 0.018 6.982 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.535 -8.970 17.947 21.101 hybrid contribution 0.699 -0.944 -1.138 1.635 sum -5.836 -9.914 16.808 20.368 Atomic orbital electron populations 1.22249 0.96547 1.01633 1.02542 1.21490 0.93684 0.84073 1.02914 1.48204 1.63951 1.13328 1.07129 1.19333 0.96486 0.93733 0.77451 1.21415 0.96850 1.32239 1.06371 0.92398 1.24930 0.97922 0.94791 0.96364 1.69928 1.35766 1.33228 1.14295 0.86486 0.84572 0.77707 0.78621 1.20622 1.21019 1.19850 1.19579 0.79971 0.87198 0.84094 1.90748 1.43965 1.17373 1.86520 1.22883 1.01843 0.93515 0.86029 1.86340 1.81073 1.39878 1.10362 1.19705 0.96308 0.92560 0.85974 1.21774 1.02933 0.94477 0.99441 1.22073 0.98864 1.01498 0.92233 1.22567 0.97928 0.88192 1.00075 1.67113 1.11556 1.15635 1.21012 1.20989 1.03306 0.90200 0.87732 1.98438 1.86434 1.16951 1.96341 0.91914 0.93188 0.91670 0.89368 0.92018 0.94637 0.93683 0.92630 0.89232 0.89301 0.83236 0.83693 0.81629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.10 1.45 5.93 -4.05 -0.02 1.42 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.24 16 5 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.51 10.28 7.75 -10.98 -0.09 10.20 16 14 O -0.51 -13.10 16.08 -14.35 -0.23 -13.33 16 15 C 0.04 0.51 3.79 36.01 0.14 0.65 16 16 O -0.27 -4.34 9.14 -39.46 -0.36 -4.70 16 17 C 0.11 1.42 6.70 -39.05 -0.26 1.15 16 18 C -0.16 -1.53 9.14 -39.15 -0.36 -1.88 16 19 C -0.13 -0.96 10.10 -39.46 -0.40 -1.36 16 20 C 0.07 0.62 11.18 -17.54 -0.20 0.43 16 21 N -0.44 -5.61 10.34 -10.24 -0.11 -5.71 16 22 C 0.14 2.04 7.29 -17.28 -0.13 1.92 16 23 Cl -0.01 -0.15 28.66 -51.86 -1.49 -1.64 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.54 7.22 -51.92 -0.37 0.17 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.31 8.07 -51.92 -0.42 0.89 16 28 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 29 H 0.04 0.90 8.07 -51.92 -0.42 0.48 16 30 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.09 1.03 6.95 -51.93 -0.36 0.67 16 33 H 0.09 0.97 6.75 -51.93 -0.35 0.62 16 34 H 0.15 1.04 6.45 -52.49 -0.34 0.70 16 35 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 328.83 15.07 4.96 4.96 Total: -1.00 -34.70 328.83 -7.54 -42.24 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -4.22 Total: -4.57 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -1.38 Total: 3.80 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.20 Total: -43.36 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.59 Total: -18.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.49 Total: -1.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.70 -7.54 -42.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077493921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.937 kcal (2) G-P(sol) polarization free energy of solvation -34.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds