Wall clock time and date at job start Tue Mar 31 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 N 1.46508 * 109.47100 * 119.99625 * 2 1 3 5 5 S 1.65601 * 120.00026 * 265.00249 * 4 2 1 6 6 O 1.42098 * 106.39948 * 178.54005 * 5 4 2 7 7 O 1.42107 * 106.40039 * 311.45842 * 5 4 2 8 8 C 1.76195 * 107.21904 * 65.00032 * 5 4 2 9 9 C 1.38639 * 119.74735 * 269.72973 * 8 5 4 10 10 C 1.37620 * 120.24651 * 179.72406 * 9 8 5 11 11 C 1.40712 * 119.74402 * 0.56358 * 10 9 8 12 12 C 1.41399 * 120.24663 * 179.68324 * 11 10 9 13 13 H 1.08002 * 119.99700 * 24.40257 * 12 11 10 14 14 C 1.39944 * 120.00341 * 204.40868 * 12 11 10 15 15 N 1.30825 * 119.99896 * 17.86214 * 14 12 11 16 16 Si 1.86793 * 119.99862 * 197.86792 * 14 12 11 17 17 H 1.48497 * 109.47377 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47443 * 119.99904 * 16 14 12 19 19 H 1.48508 * 109.47060 * 239.99491 * 16 14 12 20 20 C 1.40721 * 119.51227 * 359.70704 * 11 10 9 21 21 C 1.37615 * 119.74480 * 0.02562 * 20 11 10 22 22 C 1.50696 * 109.47399 * 239.99644 * 2 1 3 23 23 N 1.34778 * 120.00008 * 60.00216 * 22 2 1 24 24 O 1.21281 * 120.00434 * 240.00106 * 22 2 1 25 25 H 1.09000 * 109.46856 * 299.99811 * 1 2 3 26 26 H 1.08994 * 109.46574 * 60.00148 * 1 2 3 27 27 H 1.08995 * 109.46556 * 180.02562 * 1 2 3 28 28 H 0.96998 * 119.99358 * 85.00010 * 4 2 1 29 29 H 1.07996 * 119.87566 * 359.97438 * 9 8 5 30 30 H 1.08001 * 120.13030 * 180.27681 * 10 9 8 31 31 H 0.96999 * 119.99763 * 180.02562 * 15 14 12 32 32 H 1.08005 * 120.12460 * 179.97438 * 20 11 10 33 33 H 1.08004 * 119.87576 * 180.02562 * 21 20 11 34 34 H 0.97002 * 119.99918 * 359.97438 * 23 22 2 35 35 H 0.96999 * 120.00560 * 179.72618 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1963 5 16 2.4122 0.1773 2.5506 6 8 2.8124 -0.7696 3.5316 7 8 3.2437 1.2444 2.1156 8 6 0.9275 0.9148 3.1474 9 6 0.5584 2.1750 2.7028 10 6 -0.6020 2.7584 3.1579 11 6 -1.4087 2.0757 4.0870 12 6 -2.5997 2.6680 4.5667 13 1 -3.1049 3.4188 3.9772 14 6 -3.1238 2.2814 5.8054 15 7 -2.3667 1.6554 6.6693 16 14 -4.9044 2.6592 6.2251 17 1 -5.5411 3.3699 5.0873 18 1 -5.6313 1.3909 6.4863 19 1 -4.9562 3.5177 7.4358 20 6 -1.0213 0.7995 4.5356 21 6 0.1404 0.2331 4.0627 22 6 2.0324 -0.7105 -1.2304 23 7 1.7069 -0.2500 -2.4545 24 8 2.7297 -1.6965 -1.1191 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0276 0.0005 28 1 2.1110 -1.6561 1.1950 29 1 1.1818 2.6992 1.9936 30 1 -0.8900 3.7383 2.8069 31 1 -2.7301 1.3872 7.5278 32 1 -1.6328 0.2668 5.2489 33 1 0.4396 -0.7465 4.4053 34 1 1.1489 0.5384 -2.5436 35 1 2.0335 -0.7050 -3.2465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081298627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:55 Heat of formation + Delta-G solvation = -108.482482 kcal Electronic energy + Delta-G solvation = -22044.542478 eV Core-core repulsion = 18554.575605 eV Total energy + Delta-G solvation = -3489.966873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75968 -37.64173 -36.53284 -35.25402 -35.13695 -34.07710 -33.84072 -30.31160 -29.63678 -29.39473 -25.86373 -24.43256 -21.53847 -21.22297 -20.55920 -19.08911 -18.08164 -17.66576 -17.37783 -16.64713 -15.99571 -15.63638 -15.35130 -14.98807 -14.51975 -14.15044 -13.72762 -13.46225 -13.24941 -12.97416 -12.56495 -12.35210 -12.22041 -11.81182 -11.68422 -11.48398 -11.44715 -11.36918 -11.31536 -11.22283 -10.90818 -10.45439 -10.07295 -9.85913 -9.81295 -9.69950 -9.52157 -9.16852 -8.00163 -7.74605 -7.17908 -4.84260 1.19129 2.20946 2.51104 2.84229 2.86325 2.89112 2.92416 3.33182 3.62790 3.69216 4.20328 4.51195 4.69530 4.99014 5.04392 5.15067 5.33111 5.48311 5.78222 5.99966 6.03083 6.11686 6.32459 6.61044 6.64494 6.67203 6.88058 6.99652 7.10743 7.28725 7.32309 7.38588 7.60214 7.72836 7.92507 8.10421 8.28288 8.47167 8.60576 9.73490 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.023576 B = 0.004294 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.353959 B = 6519.195402 C = 7119.075500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.137 3.863 3 H 0.117 0.883 4 N -1.109 6.109 5 S 2.694 3.306 6 O -0.978 6.978 7 O -0.986 6.986 8 C -0.787 4.787 9 C -0.001 4.001 10 C -0.237 4.237 11 C 0.139 3.861 12 C -0.434 4.434 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.763 5.763 16 Si 0.916 3.084 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.270 1.270 20 C -0.184 4.184 21 C -0.012 4.012 22 C 0.519 3.481 23 N -0.854 5.854 24 O -0.536 6.536 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.418 0.582 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.289 0.711 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.403 0.597 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -0.975 -11.713 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.025 3.975 3 H 0.134 0.866 4 N -0.865 5.865 5 S 2.793 3.207 6 O -0.969 6.969 7 O -0.976 6.976 8 C -0.883 4.883 9 C -0.021 4.021 10 C -0.258 4.258 11 C 0.136 3.864 12 C -0.461 4.461 13 H 0.106 0.894 14 C -0.151 4.151 15 N -0.385 5.385 16 Si 0.739 3.261 17 H -0.180 1.180 18 H -0.192 1.192 19 H -0.195 1.195 20 C -0.204 4.204 21 C -0.032 4.032 22 C 0.302 3.698 23 N -0.418 5.418 24 O -0.412 6.412 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.253 0.747 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.232 0.768 35 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.327 -1.462 -10.852 10.955 hybrid contribution -1.615 0.146 -0.050 1.623 sum -1.288 -1.316 -10.902 11.056 Atomic orbital electron populations 1.22388 0.92560 1.03810 1.04537 1.20527 0.95812 0.97186 0.83982 0.86583 1.55653 1.84114 1.20170 1.26612 1.01246 0.74904 0.72792 0.71791 1.93508 1.82540 1.62998 1.57860 1.93478 1.66177 1.55909 1.82029 1.29106 1.26872 1.09593 1.22777 1.20139 0.94704 0.91989 0.95235 1.21003 0.97388 1.00184 1.07184 1.17854 0.90361 0.90327 0.87898 1.19978 1.05989 1.18498 1.01684 0.89398 1.26147 1.00305 0.92839 0.95787 1.69830 1.36779 1.25887 1.05971 0.86113 0.80916 0.79481 0.79551 1.17983 1.19236 1.19514 1.21342 0.98159 0.96281 1.04624 1.20252 0.93317 0.97032 0.92618 1.20816 0.79262 0.84383 0.85333 1.43821 1.56031 1.34131 1.07854 1.90725 1.37436 1.26318 1.86708 0.88872 0.91375 0.91499 0.74705 0.87868 0.88194 0.89929 0.86034 0.87841 0.76778 0.76793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.41 37.16 0.35 -1.63 16 2 C 0.14 1.77 3.32 -69.08 -0.23 1.54 16 3 H 0.12 1.41 7.50 -51.93 -0.39 1.02 16 4 N -1.11 -17.34 5.26 -5.88 -0.03 -17.37 16 5 S 2.69 51.87 5.71 -107.50 -0.61 51.25 16 6 O -0.98 -21.51 17.26 -57.17 -0.99 -22.49 16 7 O -0.99 -20.66 16.59 -57.17 -0.95 -21.60 16 8 C -0.79 -16.39 5.08 -39.29 -0.20 -16.58 16 9 C 0.00 -0.01 8.57 -39.66 -0.34 -0.35 16 10 C -0.24 -5.20 9.80 -38.87 -0.38 -5.58 16 11 C 0.14 3.35 5.58 -106.82 -0.60 2.75 16 12 C -0.43 -10.20 9.05 -37.74 -0.34 -10.54 16 13 H 0.09 1.94 7.91 -52.49 -0.41 1.53 16 14 C 0.07 1.60 5.14 -17.34 -0.09 1.52 16 15 N -0.76 -17.87 10.95 55.55 0.61 -17.26 16 16 Si 0.92 16.47 29.59 -169.99 -5.03 11.44 16 17 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 18 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 20 C -0.18 -4.41 8.70 -38.87 -0.34 -4.75 16 21 C -0.01 -0.26 9.49 -39.66 -0.38 -0.64 16 22 C 0.52 6.50 7.49 -10.99 -0.08 6.41 16 23 N -0.85 -6.54 8.77 31.22 0.27 -6.27 16 24 O -0.54 -8.82 16.83 5.56 0.09 -8.72 16 25 H 0.09 1.29 6.18 -51.93 -0.32 0.97 16 26 H 0.07 0.55 7.56 -51.93 -0.39 0.15 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.42 6.26 8.21 -34.48 -0.28 5.97 16 29 H 0.10 1.86 7.59 -52.49 -0.40 1.46 16 30 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 32 H 0.12 2.99 6.16 -52.48 -0.32 2.66 16 33 H 0.10 2.18 7.60 -52.48 -0.40 1.78 16 34 H 0.40 1.91 8.25 -40.82 -0.34 1.57 16 35 H 0.40 2.54 8.93 -40.82 -0.36 2.18 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -31.97 314.30 -8.12 -40.10 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -3.60 Total: 14.04 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -2.62 Total: -27.85 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.85 Total: -40.90 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -1.84 Total: -52.82 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Atomic # 16 Polarization: 51.87 SS G_CDS: -0.61 Total: 51.25 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.97 -8.12 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081298627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.383 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds