Wall clock time and date at job start Tue Mar 31 2020 04:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97064 * 2 1 4 4 C 1.38241 * 120.10925 * 180.29805 * 3 2 1 5 5 C 1.50706 * 119.97263 * 179.72995 * 4 3 2 6 6 C 1.38164 * 120.05471 * 359.45327 * 4 3 2 7 7 C 1.50703 * 120.02877 * 180.25444 * 6 4 3 8 8 C 1.38705 * 119.94475 * 0.27376 * 6 4 3 9 9 O 1.35901 * 120.05787 * 179.97438 * 8 6 4 10 10 S 1.52204 * 114.00304 * 89.99808 * 9 8 6 11 11 O 1.42095 * 104.28056 * 191.07464 * 10 9 8 12 12 O 1.42106 * 104.27314 * 318.93191 * 10 9 8 13 13 C 1.81395 * 104.44679 * 75.00092 * 10 9 8 14 14 C 1.53005 * 109.47176 * 180.02562 * 13 10 9 15 15 C 1.50698 * 109.47329 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99893 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00010 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00066 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47521 * 89.99754 * 19 17 15 21 21 H 1.48504 * 109.47176 * 210.00096 * 19 17 15 22 22 H 1.48504 * 109.47163 * 329.99556 * 19 17 15 23 23 C 1.38119 * 119.97265 * 179.75006 * 2 1 3 24 24 H 1.08993 * 109.46902 * 270.25154 * 1 2 3 25 25 H 1.09004 * 109.47034 * 30.25062 * 1 2 3 26 26 H 1.09000 * 109.47284 * 150.24847 * 1 2 3 27 27 H 1.08000 * 119.94870 * 0.04745 * 3 2 1 28 28 H 1.09001 * 109.46953 * 269.72239 * 5 4 3 29 29 H 1.09000 * 109.47318 * 29.71837 * 5 4 3 30 30 H 1.09000 * 109.47161 * 149.72467 * 5 4 3 31 31 H 1.09004 * 109.47325 * 89.99930 * 7 6 4 32 32 H 1.08999 * 109.47400 * 210.00317 * 7 6 4 33 33 H 1.09005 * 109.47291 * 329.99847 * 7 6 4 34 34 H 1.09001 * 109.47612 * 300.00067 * 13 10 9 35 35 H 1.08997 * 109.47209 * 60.00394 * 13 10 9 36 36 H 1.09004 * 109.46626 * 299.99749 * 14 13 10 37 37 H 1.08997 * 109.47108 * 59.99869 * 14 13 10 38 38 H 0.96995 * 119.99930 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.02750 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0062 5 6 4.3300 2.5086 -0.0124 6 6 4.2752 0.0071 -0.0010 7 6 5.7822 0.0115 -0.0020 8 6 3.5846 -1.1958 0.0047 9 8 4.2658 -2.3717 0.0092 10 16 4.5772 -2.9014 1.4017 11 8 5.4961 -3.9615 1.1761 12 8 4.9566 -1.7473 2.1389 13 6 2.9935 -3.5492 2.0041 14 6 3.1773 -4.1165 3.4132 15 6 1.8619 -4.6553 3.9134 16 1 0.9825 -4.5984 3.2889 17 6 1.7809 -5.2209 5.1682 18 7 0.6327 -5.6906 5.6049 19 14 3.3017 -5.3186 6.2485 20 1 3.3983 -4.0919 7.0796 21 1 3.2058 -6.5086 7.1317 22 1 4.5101 -5.4334 5.3930 23 6 2.1971 -1.1965 0.0052 24 1 -0.3633 0.0045 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5100 27 1 1.6566 2.1325 0.0008 28 1 4.5104 2.8191 -1.0415 29 1 3.7388 3.2689 0.4981 30 1 5.2830 2.3834 0.5017 31 1 6.1462 0.0174 1.0254 32 1 6.1478 -0.8798 -0.5119 33 1 6.1426 0.9001 -0.5203 34 1 2.2581 -2.7452 2.0297 35 1 2.6463 -4.3381 1.3369 36 1 3.9129 -4.9206 3.3879 37 1 3.5244 -3.3274 4.0801 38 1 0.5759 -6.0888 6.4876 39 1 1.6571 -2.1318 0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:09 Heat of formation + Delta-G solvation = -99.484886 kcal Electronic energy + Delta-G solvation = -22696.618205 eV Core-core repulsion = 19310.581840 eV Total energy + Delta-G solvation = -3386.036365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19844 -38.59834 -36.84227 -35.76772 -34.56810 -33.97795 -31.69084 -31.49868 -29.47473 -27.45442 -26.06952 -25.06141 -23.28239 -21.39840 -20.67948 -19.72695 -18.08346 -17.46756 -17.20773 -16.77382 -15.86244 -15.54679 -15.05282 -14.45581 -14.29519 -13.81275 -13.67797 -13.48048 -13.39725 -13.06070 -13.01679 -12.91662 -12.80896 -12.50306 -12.12153 -11.95200 -11.93009 -11.83079 -11.68845 -11.58551 -11.39161 -11.27323 -11.19663 -10.98765 -10.47414 -10.16241 -9.68713 -9.39687 -8.84953 -8.67798 -8.56122 -6.18200 -4.19529 0.31769 1.08838 1.16714 2.40521 3.25325 3.32767 3.35670 3.36998 3.94865 4.27645 4.34478 4.48269 4.53804 4.71443 4.85944 4.89279 5.06222 5.13259 5.30881 5.31907 5.39471 5.43910 5.47139 5.52008 5.54866 5.56070 5.62556 5.73849 5.91689 5.97064 6.11939 6.13733 6.22505 6.31208 6.34963 6.76333 6.78775 6.90520 7.52253 8.34734 8.82434 9.41364 10.94155 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.005101 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.270637 B = 5487.292901 C = 6276.571238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.104 4.104 4 C -0.073 4.073 5 C -0.115 4.115 6 C -0.060 4.060 7 C -0.131 4.131 8 C 0.078 3.922 9 O -0.669 6.669 10 S 2.571 3.429 11 O -0.938 6.938 12 O -0.957 6.957 13 C -0.607 4.607 14 C -0.004 4.004 15 C -0.519 4.519 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.868 3.132 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.262 1.262 23 C -0.130 4.130 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 15.951 -13.348 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.071 4.071 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.172 4.172 6 C -0.063 4.063 7 C -0.188 4.188 8 C 0.037 3.963 9 O -0.628 6.628 10 S 2.671 3.329 11 O -0.936 6.936 12 O -0.955 6.955 13 C -0.737 4.737 14 C -0.043 4.043 15 C -0.558 4.558 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.694 3.306 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.150 4.150 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.390 15.914 -13.423 21.277 hybrid contribution 0.043 -0.683 0.803 1.055 sum 4.433 15.230 -12.620 20.270 Atomic orbital electron populations 1.20837 0.90020 1.03135 1.03276 1.19703 0.96600 0.91864 0.98906 1.21065 0.93302 0.97923 1.00004 1.19627 0.93585 0.94410 0.99692 1.20840 1.00536 0.93287 1.02514 1.19802 0.97057 0.91012 0.98388 1.21010 0.90338 1.03109 1.04293 1.17774 0.89713 0.81032 1.07822 1.85697 1.76143 1.42635 1.58328 1.06188 0.78583 0.75119 0.73010 1.93588 1.60216 1.57203 1.82610 1.93584 1.82250 1.47797 1.71898 1.30569 1.19902 1.12312 1.10950 1.19386 1.00633 0.96620 0.87617 1.20830 0.93804 1.39592 1.01603 0.90375 1.24969 0.96030 0.94442 0.97571 1.69876 1.24561 1.39683 1.19168 0.86939 0.84099 0.78393 0.81129 1.19636 1.20687 1.18599 1.21273 0.91715 1.00041 1.02014 0.90243 0.91189 0.91009 0.85083 0.90875 0.91064 0.90745 0.88631 0.91370 0.90591 0.85373 0.85109 0.94843 0.95218 0.92354 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.07 -0.81 5.88 -104.64 -0.62 -1.42 16 3 C -0.10 -1.09 9.35 -39.56 -0.37 -1.46 16 4 C -0.07 -0.83 5.88 -104.64 -0.62 -1.45 16 5 C -0.12 -0.93 9.19 36.01 0.33 -0.60 16 6 C -0.06 -0.84 5.30 -104.48 -0.55 -1.39 16 7 C -0.13 -1.66 8.15 36.01 0.29 -1.36 16 8 C 0.08 1.19 4.78 -39.22 -0.19 1.00 16 9 O -0.67 -11.06 9.12 -51.75 -0.47 -11.53 16 10 S 2.57 47.97 5.14 -107.50 -0.55 47.42 16 11 O -0.94 -20.01 18.09 -67.04 -1.21 -21.23 16 12 O -0.96 -18.67 14.69 -67.04 -0.98 -19.65 16 13 C -0.61 -11.66 5.40 37.16 0.20 -11.46 16 14 C 0.00 -0.09 4.05 -27.88 -0.11 -0.20 16 15 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 19 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 23 C -0.13 -1.75 8.11 -39.44 -0.32 -2.07 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 31 H 0.10 1.29 7.21 -51.93 -0.37 0.92 16 32 H 0.07 0.89 7.53 -51.93 -0.39 0.49 16 33 H 0.08 0.71 6.70 -51.93 -0.35 0.36 16 34 H 0.13 2.24 6.60 -51.92 -0.34 1.89 16 35 H 0.13 2.28 8.14 -51.93 -0.42 1.86 16 36 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 37 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.14 1.71 7.50 -52.48 -0.39 1.32 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -34.07 330.50 -9.66 -43.73 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.50 Total: -0.40 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -2.02 Total: -33.93 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.77 Total: -26.18 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.67 Total: -52.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.55 Total: 47.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.07 -9.66 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.755 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds