Wall clock time and date at job start Tue Mar 31 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97064 * 2 1 4 4 C 1.38241 * 120.10925 * 180.29805 * 3 2 1 5 5 C 1.50706 * 119.97263 * 179.72995 * 4 3 2 6 6 C 1.38164 * 120.05471 * 359.45327 * 4 3 2 7 7 C 1.50703 * 120.02877 * 180.25444 * 6 4 3 8 8 C 1.38705 * 119.94475 * 0.27376 * 6 4 3 9 9 O 1.35901 * 120.05787 * 179.97438 * 8 6 4 10 10 S 1.52204 * 114.00304 * 89.99808 * 9 8 6 11 11 O 1.42095 * 104.28056 * 191.07464 * 10 9 8 12 12 O 1.42106 * 104.27314 * 318.93191 * 10 9 8 13 13 C 1.81395 * 104.44679 * 75.00092 * 10 9 8 14 14 C 1.53005 * 109.47176 * 180.02562 * 13 10 9 15 15 C 1.50698 * 109.47329 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99893 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00010 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00066 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47521 * 89.99754 * 19 17 15 21 21 H 1.48504 * 109.47176 * 210.00096 * 19 17 15 22 22 H 1.48504 * 109.47163 * 329.99556 * 19 17 15 23 23 C 1.38119 * 119.97265 * 179.75006 * 2 1 3 24 24 H 1.08993 * 109.46902 * 270.25154 * 1 2 3 25 25 H 1.09004 * 109.47034 * 30.25062 * 1 2 3 26 26 H 1.09000 * 109.47284 * 150.24847 * 1 2 3 27 27 H 1.08000 * 119.94870 * 0.04745 * 3 2 1 28 28 H 1.09001 * 109.46953 * 269.72239 * 5 4 3 29 29 H 1.09000 * 109.47318 * 29.71837 * 5 4 3 30 30 H 1.09000 * 109.47161 * 149.72467 * 5 4 3 31 31 H 1.09004 * 109.47325 * 89.99930 * 7 6 4 32 32 H 1.08999 * 109.47400 * 210.00317 * 7 6 4 33 33 H 1.09005 * 109.47291 * 329.99847 * 7 6 4 34 34 H 1.09001 * 109.47612 * 300.00067 * 13 10 9 35 35 H 1.08997 * 109.47209 * 60.00394 * 13 10 9 36 36 H 1.09004 * 109.46626 * 299.99749 * 14 13 10 37 37 H 1.08997 * 109.47108 * 59.99869 * 14 13 10 38 38 H 0.96995 * 119.99930 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.02750 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0062 5 6 4.3300 2.5086 -0.0124 6 6 4.2752 0.0071 -0.0010 7 6 5.7822 0.0115 -0.0020 8 6 3.5846 -1.1958 0.0047 9 8 4.2658 -2.3717 0.0092 10 16 4.5772 -2.9014 1.4017 11 8 5.4961 -3.9615 1.1761 12 8 4.9566 -1.7473 2.1389 13 6 2.9935 -3.5492 2.0041 14 6 3.1773 -4.1165 3.4132 15 6 1.8619 -4.6553 3.9134 16 1 0.9825 -4.5984 3.2889 17 6 1.7809 -5.2209 5.1682 18 7 0.6327 -5.6906 5.6049 19 14 3.3017 -5.3186 6.2485 20 1 3.3983 -4.0919 7.0796 21 1 3.2058 -6.5086 7.1317 22 1 4.5101 -5.4334 5.3930 23 6 2.1971 -1.1965 0.0052 24 1 -0.3633 0.0045 1.0276 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5100 27 1 1.6566 2.1325 0.0008 28 1 4.5104 2.8191 -1.0415 29 1 3.7388 3.2689 0.4981 30 1 5.2830 2.3834 0.5017 31 1 6.1462 0.0174 1.0254 32 1 6.1478 -0.8798 -0.5119 33 1 6.1426 0.9001 -0.5203 34 1 2.2581 -2.7452 2.0297 35 1 2.6463 -4.3381 1.3369 36 1 3.9129 -4.9206 3.3879 37 1 3.5244 -3.3274 4.0801 38 1 0.5759 -6.0888 6.4876 39 1 1.6571 -2.1318 0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111325003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:08 Heat of formation + Delta-G solvation = -121.259723 kcal Electronic energy + Delta-G solvation = -22697.562433 eV Core-core repulsion = 19310.581840 eV Total energy + Delta-G solvation = -3386.980592 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32508 -39.62632 -38.38882 -37.31422 -36.00545 -35.35875 -33.56602 -32.55247 -30.34151 -28.31277 -27.87044 -25.97753 -24.42064 -23.21672 -21.63527 -20.95395 -19.70237 -18.95493 -18.52064 -18.33347 -16.90535 -16.79443 -16.51026 -16.34421 -15.41247 -15.26351 -14.87149 -14.62323 -14.50911 -14.22238 -14.02977 -13.93614 -13.83716 -13.76913 -13.63824 -13.39692 -13.23680 -13.13454 -13.04463 -12.84927 -12.68814 -12.44204 -12.33477 -12.20001 -12.01835 -11.85172 -11.72795 -11.29191 -10.85806 -9.79923 -9.49280 -8.38023 -6.44125 -1.07226 0.09178 0.17717 1.07448 1.30957 1.33100 1.43068 2.28340 2.43811 2.46295 2.88095 2.95727 3.55215 3.65758 3.68295 3.81587 3.90678 4.00493 4.05461 4.22850 4.47874 4.53310 4.62302 4.66466 4.68535 4.72800 4.85019 4.87639 4.92134 4.98349 5.00453 5.12102 5.13282 5.21778 5.35198 5.43055 5.45703 5.48962 5.89088 6.14546 6.60963 7.20158 8.77417 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.017592 B = 0.005101 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.270637 B = 5487.292901 C = 6276.571238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.075 4.075 3 C -0.097 4.097 4 C -0.075 4.075 5 C -0.116 4.116 6 C -0.081 4.081 7 C -0.135 4.135 8 C 0.037 3.963 9 O -0.662 6.662 10 S 2.597 3.403 11 O -0.969 6.969 12 O -0.966 6.966 13 C -0.610 4.610 14 C -0.012 4.012 15 C -0.528 4.528 16 H 0.051 0.949 17 C 0.017 3.983 18 N -0.938 5.938 19 Si 0.922 3.078 20 H -0.258 1.258 21 H -0.273 1.273 22 H -0.251 1.251 23 C -0.148 4.148 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.033 0.967 37 H 0.036 0.964 38 H 0.271 0.729 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 18.471 -13.888 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.075 4.075 3 C -0.115 4.115 4 C -0.075 4.075 5 C -0.172 4.172 6 C -0.084 4.084 7 C -0.191 4.191 8 C -0.004 4.004 9 O -0.622 6.622 10 S 2.697 3.303 11 O -0.967 6.967 12 O -0.965 6.965 13 C -0.739 4.739 14 C -0.051 4.051 15 C -0.567 4.567 16 H 0.069 0.931 17 C -0.182 4.182 18 N -0.577 5.577 19 Si 0.745 3.255 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.175 1.175 23 C -0.168 4.168 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.185 0.815 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.778 18.421 -13.959 23.601 hybrid contribution -0.199 -1.326 0.843 1.584 sum 4.579 17.095 -13.115 22.028 Atomic orbital electron populations 1.20916 0.88191 1.04581 1.03592 1.20098 0.97985 0.91548 0.97868 1.21549 0.93221 0.98996 0.97765 1.20091 0.94298 0.94892 0.98244 1.20952 1.00406 0.91816 1.04041 1.20138 0.97721 0.91518 0.98997 1.21070 0.90056 1.04190 1.03769 1.18255 0.90575 0.80793 1.10761 1.85665 1.76434 1.43674 1.56382 1.05401 0.77568 0.74323 0.73058 1.93541 1.61212 1.58544 1.83444 1.93554 1.82236 1.47926 1.72783 1.30532 1.21539 1.13216 1.08619 1.19345 0.98469 0.96877 0.90378 1.21115 0.94726 1.39398 1.01445 0.93093 1.25825 0.99009 0.94195 0.99147 1.69996 1.26748 1.41012 1.19957 0.86062 0.80648 0.79168 0.79627 1.18283 1.19765 1.17454 1.21510 0.91285 1.01330 1.02685 0.90348 0.88590 0.90855 0.81480 0.88912 0.89163 0.90788 0.89910 0.92559 0.87337 0.83948 0.83880 0.94881 0.94588 0.92032 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.07 -1.55 5.88 -19.88 -0.12 -1.67 16 3 C -0.10 -1.71 9.35 22.28 0.21 -1.51 16 4 C -0.08 -1.51 5.88 -19.88 -0.12 -1.62 16 5 C -0.12 -1.44 9.19 71.24 0.65 -0.78 16 6 C -0.08 -2.16 5.30 -19.77 -0.10 -2.27 16 7 C -0.13 -3.28 8.15 71.24 0.58 -2.70 16 8 C 0.04 1.13 4.78 22.50 0.11 1.23 16 9 O -0.66 -22.04 9.12 -61.53 -0.56 -22.60 16 10 S 2.60 97.10 5.14 -56.49 -0.29 96.81 16 11 O -0.97 -41.67 18.09 -118.57 -2.15 -43.82 16 12 O -0.97 -37.57 14.69 -118.57 -1.74 -39.31 16 13 C -0.61 -23.51 5.40 71.98 0.39 -23.13 16 14 C -0.01 -0.57 4.05 29.85 0.12 -0.45 16 15 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 16 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 17 C 0.02 0.99 5.47 84.65 0.46 1.45 16 18 N -0.94 -57.41 13.96 21.45 0.30 -57.11 16 19 Si 0.92 43.78 27.47 68.60 1.88 45.66 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 23 C -0.15 -3.88 8.11 22.36 0.18 -3.69 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.10 0.96 8.09 -2.38 -0.02 0.94 16 26 H 0.07 1.09 8.08 -2.39 -0.02 1.07 16 27 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.07 0.95 6.70 -2.39 -0.02 0.93 16 31 H 0.08 2.22 7.21 -2.38 -0.02 2.20 16 32 H 0.06 1.46 7.53 -2.39 -0.02 1.45 16 33 H 0.11 1.81 6.70 -2.38 -0.02 1.79 16 34 H 0.14 5.00 6.60 -2.39 -0.02 4.98 16 35 H 0.14 5.06 8.14 -2.39 -0.02 5.04 16 36 H 0.03 1.58 7.20 -2.38 -0.02 1.56 16 37 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.15 3.51 7.50 -2.91 -0.02 3.49 16 Total: -1.00 -74.25 330.50 1.76 -72.49 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.99 Total: 13.81 kcal Atomic # 6 Polarization: -69.25 SS G_CDS: 3.33 Total: -65.92 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.30 Total: -57.11 kcal Atomic # 8 Polarization: -101.28 SS G_CDS: -4.45 Total: -105.73 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 97.10 SS G_CDS: -0.29 Total: 96.81 kcal Total: -74.25 1.76 -72.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.773 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds