Wall clock time and date at job start Tue Mar 31 2020 03:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 119.99583 * 2 1 4 4 H 1.48500 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47338 * 299.99516 * 3 2 1 6 6 H 1.48497 * 109.47413 * 60.00254 * 3 2 1 7 7 C 1.38799 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00021 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99896 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99863 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47120 * 180.02562 * 10 9 7 12 12 O 1.21294 * 120.00157 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.40158 * 119.99807 * 180.02562 * 13 11 10 15 15 C 1.40410 * 125.97643 * 0.02562 * 14 13 11 16 16 C 1.35238 * 107.86643 * 179.97438 * 15 14 13 17 17 N 1.34965 * 107.86346 * 359.97438 * 16 15 14 18 18 C 1.46502 * 125.97705 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47220 * 124.98369 * 18 17 16 20 20 C 1.50697 * 109.47109 * 180.02562 * 19 18 17 21 21 N 1.34779 * 120.00012 * 180.02562 * 20 19 18 22 22 O 1.21279 * 120.00200 * 0.02562 * 20 19 18 23 23 N 1.31224 * 125.97071 * 179.97438 * 14 13 11 24 24 H 0.97001 * 120.00378 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46962 * 60.00473 * 10 9 7 26 26 H 1.09000 * 109.46856 * 300.00127 * 10 9 7 27 27 H 0.96999 * 119.99686 * 0.02562 * 13 11 10 28 28 H 1.07998 * 126.06328 * 0.02562 * 15 14 13 29 29 H 1.07999 * 126.06766 * 179.97438 * 16 15 14 30 30 H 1.09004 * 109.47046 * 244.98445 * 18 17 16 31 31 H 1.08995 * 109.47139 * 4.98480 * 18 17 16 32 32 H 1.09001 * 109.47462 * 300.00438 * 19 18 17 33 33 H 1.09005 * 109.47027 * 60.00003 * 19 18 17 34 34 H 0.97000 * 119.99795 * 359.97438 * 21 20 19 35 35 H 0.97004 * 120.00381 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9875 -5.3027 0.0018 12 8 0.7911 -5.5023 0.0019 13 7 2.8443 -6.3431 0.0009 14 6 2.3527 -7.6556 0.0008 15 6 0.9993 -8.0296 0.0009 16 6 0.9422 -9.3808 0.0001 17 7 2.2082 -9.8486 -0.0011 18 6 2.6045 -11.2591 -0.0028 19 6 3.5380 -11.5251 -1.1854 20 6 3.9451 -12.9760 -1.1875 21 7 4.7714 -13.4427 -2.1446 22 8 3.5291 -13.7238 -0.3281 23 7 3.0770 -8.7499 -0.0005 24 1 -0.4851 0.8400 -0.0004 25 1 3.1252 -3.7310 0.8908 26 1 3.1238 -3.7317 -0.8892 27 1 3.8010 -6.1834 0.0004 28 1 0.1540 -7.3574 0.0007 29 1 0.0432 -9.9792 0.0003 30 1 3.1216 -11.4923 0.9280 31 1 1.7171 -11.8856 -0.0923 32 1 3.0209 -11.2918 -2.1162 33 1 4.4254 -10.8985 -1.0960 34 1 5.1038 -12.8447 -2.8322 35 1 5.0332 -14.3768 -2.1462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117705036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:30 Heat of formation + Delta-G solvation = 7.229993 kcal Electronic energy + Delta-G solvation = -20163.016932 eV Core-core repulsion = 16710.360480 eV Total energy + Delta-G solvation = -3452.656453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34341 -39.98070 -39.14126 -35.12453 -34.21787 -33.59110 -32.45858 -30.46769 -29.75806 -28.70993 -25.54844 -24.60441 -22.07149 -21.25831 -20.62517 -19.83265 -17.92640 -17.85938 -17.64972 -16.92515 -16.41249 -16.13955 -15.64780 -15.47340 -14.82947 -14.79819 -14.22888 -14.11867 -13.67776 -13.48501 -13.09613 -12.88076 -12.77902 -12.62539 -12.17680 -11.79410 -11.08940 -11.05104 -10.79540 -10.72965 -10.68438 -10.52368 -10.23959 -9.85565 -9.46988 -9.10215 -8.81382 -8.29738 -8.16294 -6.54597 -6.24976 -3.96116 1.77951 2.08167 2.09731 2.59861 2.88061 3.13999 3.20381 3.27782 3.32406 3.36042 3.61230 4.16668 4.19178 4.35054 4.50424 4.74183 4.91392 5.01848 5.06224 5.10691 5.36416 5.48373 5.57795 5.77699 5.79418 5.86802 6.05487 6.21744 6.33686 6.74277 6.89236 7.04438 7.22350 7.57516 7.69947 7.91760 8.32487 8.39601 9.20754 10.82462 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.049697 B = 0.002231 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.280101 B =12547.538103 C =12944.712789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.075 0.925 9 S -0.054 6.054 10 C -0.151 4.151 11 C 0.540 3.460 12 O -0.490 6.490 13 N -0.642 5.642 14 C 0.310 3.690 15 C -0.263 4.263 16 C 0.061 3.939 17 N -0.377 5.377 18 C 0.158 3.842 19 C -0.157 4.157 20 C 0.524 3.476 21 N -0.855 5.855 22 O -0.545 6.545 23 N -0.333 5.333 24 H 0.268 0.732 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.413 0.587 28 H 0.175 0.825 29 H 0.176 0.824 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.404 0.596 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -23.642 -4.488 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.093 0.907 9 S 0.172 5.828 10 C -0.302 4.302 11 C 0.327 3.673 12 O -0.360 6.360 13 N -0.293 5.293 14 C 0.054 3.946 15 C -0.293 4.293 16 C -0.084 4.084 17 N -0.161 5.161 18 C 0.036 3.964 19 C -0.197 4.197 20 C 0.309 3.691 21 N -0.418 5.418 22 O -0.422 6.422 23 N -0.164 5.164 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.249 0.751 28 H 0.192 0.808 29 H 0.193 0.807 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.232 0.768 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 7.740 -24.726 -3.848 26.193 hybrid contribution 2.027 1.537 -0.436 2.581 sum 9.767 -23.189 -4.284 25.524 Atomic orbital electron populations 1.70021 1.05949 1.27440 1.46807 1.24999 0.95046 0.99080 0.94473 0.86099 0.79587 0.81793 0.77910 1.19585 1.20558 1.20561 1.22902 0.95008 0.91486 1.59027 0.90717 1.85418 1.04332 0.96291 1.96760 1.23526 1.07074 0.93984 1.05569 1.20508 0.86278 0.85790 0.74770 1.90635 1.15237 1.84740 1.45384 1.42927 1.11070 1.01319 1.73947 1.19263 0.92207 0.85279 0.97879 1.21985 0.97134 0.94288 1.15934 1.22614 0.88834 0.95234 1.01686 1.48092 1.03697 1.04906 1.59427 1.21284 1.00246 0.75872 0.98958 1.21924 1.02907 0.93616 1.01274 1.20464 0.77811 0.90069 0.80794 1.43864 1.51270 1.15203 1.31475 1.90782 1.54883 1.59290 1.37266 1.77237 1.15418 0.91539 1.32164 0.92177 0.88578 0.88592 0.75113 0.80770 0.80674 0.89125 0.87774 0.88027 0.87110 0.76760 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.05 -1.43 20.57 -107.50 -2.21 -3.64 16 10 C -0.15 -2.90 6.16 36.00 0.22 -2.68 16 11 C 0.54 9.84 7.82 -10.99 -0.09 9.76 16 12 O -0.49 -10.45 12.99 5.55 0.07 -10.38 16 13 N -0.64 -9.49 5.45 -11.13 -0.06 -9.55 16 14 C 0.31 4.74 8.11 -154.38 -1.25 3.49 16 15 C -0.26 -3.96 9.61 -39.83 -0.38 -4.34 16 16 C 0.06 0.70 11.44 -17.24 -0.20 0.50 16 17 N -0.38 -4.25 3.68 -61.38 -0.23 -4.48 16 18 C 0.16 1.29 5.79 -4.04 -0.02 1.27 16 19 C -0.16 -0.99 5.88 -27.89 -0.16 -1.15 16 20 C 0.52 3.65 8.10 -10.99 -0.09 3.56 16 21 N -0.85 -3.02 8.87 31.22 0.28 -2.74 16 22 O -0.55 -5.99 16.82 5.56 0.09 -5.90 16 23 N -0.33 -4.58 12.43 31.44 0.39 -4.19 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 26 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.41 4.81 8.82 -40.82 -0.36 4.45 16 28 H 0.18 2.96 5.92 -52.49 -0.31 2.65 16 29 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.10 0.69 8.03 -51.93 -0.42 0.28 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.40 0.40 8.83 -40.82 -0.36 0.03 16 35 H 0.40 1.13 8.93 -40.82 -0.36 0.76 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -36.88 328.17 -6.67 -43.55 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.89 Total: 3.50 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.77 Total: -2.22 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 1.12 Total: -45.90 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.17 Total: -16.28 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.88 -6.67 -43.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117705036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.781 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds