Wall clock time and date at job start Tue Mar 31 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37099 * 119.99950 * 2 1 4 4 H 1.08000 * 119.99993 * 142.82259 * 3 2 1 5 5 C 1.38952 * 119.99921 * 322.82305 * 3 2 1 6 6 N 1.31412 * 119.99990 * 158.40119 * 5 3 2 7 7 Si 1.86799 * 119.99937 * 338.40980 * 5 3 2 8 8 H 1.48503 * 109.47166 * 95.71920 * 7 5 3 9 9 H 1.48502 * 109.47176 * 215.71628 * 7 5 3 10 10 H 1.48495 * 109.47246 * 335.71796 * 7 5 3 11 11 C 1.34781 * 120.00320 * 179.97438 * 2 1 3 12 12 O 1.21287 * 120.00132 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99729 * 0.02562 * 11 2 1 14 14 N 1.46491 * 109.46864 * 179.97438 * 13 11 2 15 15 C 1.34782 * 120.00165 * 180.27407 * 14 13 11 16 16 O 1.21549 * 119.99585 * 359.72435 * 15 14 13 17 17 C 1.47854 * 120.00200 * 179.72384 * 15 14 13 18 18 C 1.39547 * 120.12211 * 359.72320 * 17 15 14 19 19 C 1.38204 * 119.87895 * 179.81099 * 18 17 15 20 20 F 1.35103 * 119.94201 * 180.23098 * 19 18 17 21 21 C 1.38534 * 120.12036 * 0.44684 * 19 18 17 22 22 C 1.38526 * 120.24058 * 359.78416 * 21 19 18 23 23 F 1.35103 * 119.94115 * 179.97438 * 22 21 19 24 24 C 1.38203 * 120.12729 * 0.02562 * 22 21 19 25 25 H 1.09002 * 109.47162 * 265.13247 * 1 2 3 26 26 H 1.08994 * 109.47302 * 25.13740 * 1 2 3 27 27 H 1.08999 * 109.46950 * 145.14058 * 1 2 3 28 28 H 0.97001 * 119.99976 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.46824 * 59.99680 * 13 11 2 30 30 H 1.08997 * 109.46812 * 299.99967 * 13 11 2 31 31 H 0.97003 * 120.00255 * 359.97438 * 14 13 11 32 32 H 1.08005 * 120.05906 * 0.02562 * 18 17 15 33 33 H 1.07997 * 119.88138 * 179.76477 * 21 19 18 34 34 H 1.07997 * 120.06865 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0658 1.2824 0.5652 5 6 1.6674 2.2684 -0.7272 6 7 2.0431 3.4890 -0.4175 7 14 0.4840 1.9866 -2.1447 8 1 -0.9113 2.1585 -1.6663 9 1 0.7616 2.9682 -3.2239 10 1 0.6608 0.6093 -2.6708 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 0.0005 14 7 2.3374 -3.5857 0.0005 15 6 1.8882 -4.8565 -0.0051 16 8 0.6932 -5.0786 -0.0050 17 6 2.8491 -5.9802 -0.0112 18 6 4.2216 -5.7281 -0.0171 19 6 5.1153 -6.7823 -0.0189 20 9 6.4443 -6.5396 -0.0199 21 6 4.6508 -8.0874 -0.0242 22 6 3.2894 -8.3435 -0.0233 23 9 2.8431 -9.6186 -0.0290 24 6 2.3868 -7.2969 -0.0175 25 1 -0.3633 -0.0872 1.0240 26 1 -0.3633 0.9303 -0.4365 27 1 -0.3633 -0.8433 -0.5874 28 1 1.7062 4.2437 -0.9254 29 1 0.7591 -2.5302 -0.8896 30 1 0.7584 -2.5298 0.8903 31 1 3.2911 -3.4085 0.0001 32 1 4.5848 -4.7109 -0.0168 33 1 5.3526 -8.9083 -0.0295 34 1 1.3256 -7.4976 -0.0172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125587899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:02 Heat of formation + Delta-G solvation = -134.863370 kcal Electronic energy + Delta-G solvation = -22972.662854 eV Core-core repulsion = 18927.711633 eV Total energy + Delta-G solvation = -4044.951221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.12473 -50.10593 -41.53166 -40.49077 -39.09062 -36.95655 -35.62496 -34.19125 -32.61231 -31.54149 -29.61369 -28.09560 -26.55286 -25.07171 -23.89510 -21.86033 -21.13968 -19.83936 -19.10008 -18.44457 -17.92973 -17.80353 -17.52211 -17.20253 -17.06805 -16.92156 -16.68016 -16.41218 -16.39428 -15.86655 -15.60301 -15.35086 -14.71159 -14.58814 -14.37720 -14.05209 -13.87892 -13.56095 -13.40724 -13.14480 -13.01976 -12.97987 -12.66962 -12.28244 -11.84245 -11.38003 -11.11244 -10.57026 -10.46063 -10.19605 -9.97592 -9.78768 -8.54817 -6.19361 -0.64683 -0.23028 1.20786 1.33129 1.45516 1.45902 1.74631 1.79049 2.16136 2.37529 2.61231 2.71939 2.90874 3.11794 3.33321 3.58833 3.71302 3.80609 3.84946 4.20017 4.26835 4.33840 4.39915 4.56851 4.61879 4.69435 4.80108 4.81654 4.88363 5.07442 5.46739 5.51081 5.99543 6.29330 6.44454 6.84988 6.91295 7.21139 7.70519 8.61705 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.003189 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.065562 B = 8777.546242 C = 9471.865525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.473 5.473 3 C -0.340 4.340 4 H 0.050 0.950 5 C 0.014 3.986 6 N -0.907 5.907 7 Si 0.953 3.047 8 H -0.239 1.239 9 H -0.291 1.291 10 H -0.256 1.256 11 C 0.450 3.550 12 O -0.605 6.605 13 C 0.115 3.885 14 N -0.704 5.704 15 C 0.564 3.436 16 O -0.558 6.558 17 C -0.081 4.081 18 C -0.127 4.127 19 C 0.123 3.877 20 F -0.129 7.129 21 C -0.151 4.151 22 C 0.125 3.875 23 F -0.126 7.126 24 C -0.103 4.103 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.282 0.718 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.414 0.586 32 H 0.153 0.847 33 H 0.179 0.821 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -22.609 -0.828 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.194 5.194 3 C -0.468 4.468 4 H 0.068 0.932 5 C -0.189 4.189 6 N -0.544 5.544 7 Si 0.776 3.224 8 H -0.164 1.164 9 H -0.218 1.218 10 H -0.180 1.180 11 C 0.239 3.761 12 O -0.490 6.490 13 C -0.012 4.012 14 N -0.358 5.358 15 C 0.351 3.649 16 O -0.438 6.438 17 C -0.084 4.084 18 C -0.147 4.147 19 C 0.104 3.896 20 F -0.107 7.107 21 C -0.170 4.170 22 C 0.105 3.895 23 F -0.105 7.105 24 C -0.122 4.122 25 H 0.100 0.900 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.171 0.829 33 H 0.197 0.803 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.573 -22.523 -0.835 22.593 hybrid contribution 0.564 0.698 -0.410 0.986 sum -1.009 -21.825 -1.246 21.884 Atomic orbital electron populations 1.22362 0.79792 1.03137 1.03923 1.43701 1.06232 1.04415 1.65080 1.18680 1.09701 0.87655 1.30741 0.93237 1.26182 0.99711 0.93824 0.99203 1.69861 1.45703 0.99324 1.39497 0.85782 0.79327 0.79029 0.78270 1.16375 1.21821 1.17966 1.20884 0.88069 0.86055 0.81048 1.90518 1.15679 1.87362 1.55461 1.21103 0.91604 0.82903 1.05618 1.45690 1.11853 1.04587 1.73648 1.18151 0.87913 0.82495 0.76294 1.90776 1.16733 1.84998 1.51277 1.19258 0.92274 0.93029 1.03864 1.21531 0.91885 1.00688 1.00604 1.17068 0.77735 0.92879 1.01950 1.91576 1.30398 1.95069 1.93686 1.21430 0.95410 0.97370 1.02830 1.16993 0.91437 0.78983 1.02048 1.91570 1.89719 1.35464 1.93703 1.21313 1.01979 0.90014 0.98921 0.90019 0.92276 0.88400 0.90856 0.87191 0.87041 0.74686 0.82915 0.80333 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.68 8.78 127.77 1.12 2.81 16 2 N -0.47 -21.42 2.59 -658.90 -1.70 -23.12 16 3 C -0.34 -19.15 9.37 84.04 0.79 -18.36 16 4 H 0.05 3.27 7.90 -2.91 -0.02 3.25 16 5 C 0.01 0.74 5.29 84.93 0.45 1.19 16 6 N -0.91 -52.42 13.96 21.66 0.30 -52.12 16 7 Si 0.95 39.93 24.96 68.60 1.71 41.64 16 8 H -0.24 -8.68 6.69 99.48 0.67 -8.01 16 9 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 11 C 0.45 19.08 7.70 87.66 0.67 19.76 16 12 O -0.61 -30.20 15.53 -3.05 -0.05 -30.25 16 13 C 0.11 3.52 4.77 85.64 0.41 3.93 16 14 N -0.70 -20.04 5.48 -469.72 -2.57 -22.62 16 15 C 0.56 15.03 7.77 86.79 0.67 15.71 16 16 O -0.56 -17.33 16.34 -3.87 -0.06 -17.39 16 17 C -0.08 -1.72 5.87 -20.10 -0.12 -1.83 16 18 C -0.13 -2.44 9.52 22.58 0.21 -2.22 16 19 C 0.12 2.11 7.29 22.33 0.16 2.27 16 20 F -0.13 -2.42 17.26 44.97 0.78 -1.64 16 21 C -0.15 -2.11 10.00 22.41 0.22 -1.88 16 22 C 0.12 2.00 7.29 22.33 0.16 2.16 16 23 F -0.13 -2.07 17.26 44.97 0.78 -1.29 16 24 C -0.10 -1.91 9.57 22.58 0.22 -1.69 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.06 2.13 3.42 -2.39 -0.01 2.12 16 27 H 0.10 2.53 6.64 -2.39 -0.02 2.51 16 28 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.11 3.02 7.41 -2.39 -0.02 3.00 16 30 H 0.11 3.02 8.11 -2.39 -0.02 3.00 16 31 H 0.41 11.79 5.47 -92.71 -0.51 11.28 16 32 H 0.15 2.88 6.40 -2.91 -0.02 2.86 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.16 2.90 7.65 -2.91 -0.02 2.88 16 Total: -1.00 -70.09 305.03 4.79 -65.29 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.63 Total: 19.66 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 4.98 Total: 21.83 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -3.97 Total: -97.86 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.11 Total: -47.64 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 1.55 Total: -2.93 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 1.71 Total: 41.64 kcal Total: -70.09 4.79 -65.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125587899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.571 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds