Wall clock time and date at job start Tue Mar 31 2020 04:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36490 * 126.06493 * 179.72506 * 9 7 2 11 11 C 1.35694 * 107.50772 * 180.02562 * 10 9 7 12 12 N 1.40535 * 126.08870 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00241 * 179.97438 * 12 11 10 14 14 O 1.21621 * 120.00022 * 0.02562 * 13 12 11 15 15 C 1.47556 * 120.00235 * 180.02562 * 13 12 11 16 16 C 1.36486 * 125.92348 * 180.02562 * 15 13 12 17 17 N 1.36203 * 107.01355 * 179.97438 * 16 15 13 18 18 C 1.36668 * 132.44522 * 180.02562 * 17 16 15 19 19 C 1.35479 * 119.10367 * 180.02562 * 18 17 16 20 20 C 1.40290 * 119.35481 * 359.96223 * 19 18 17 21 21 N 1.31146 * 120.41788 * 0.02562 * 20 19 18 22 22 C 1.34289 * 120.94268 * 359.97438 * 21 20 19 23 23 N 1.32215 * 131.65604 * 180.34574 * 22 21 20 24 24 C 1.40667 * 107.82982 * 359.97438 * 11 10 9 25 25 N 1.30909 * 108.38386 * 359.72223 * 24 11 10 26 26 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 27 27 H 1.08005 * 126.25251 * 359.97274 * 10 9 7 28 28 H 0.97006 * 119.99721 * 359.97438 * 12 11 10 29 29 H 1.08000 * 126.49620 * 359.97438 * 16 15 13 30 30 H 1.08005 * 120.44478 * 359.96705 * 18 17 16 31 31 H 1.08000 * 120.31733 * 179.97438 * 19 18 17 32 32 H 1.08009 * 119.79404 * 180.02562 * 20 19 18 33 33 H 1.07995 * 125.80700 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6404 -0.0134 11 6 0.8578 -4.5385 -0.0187 12 7 0.9889 -5.9377 -0.0257 13 6 -0.1103 -6.7176 -0.0300 14 8 -1.2157 -6.2104 -0.0282 15 6 0.0274 -8.1867 -0.0368 16 6 -0.9984 -9.0870 -0.0421 17 7 -0.4387 -10.3287 -0.0480 18 6 -0.9791 -11.5840 -0.0552 19 6 -0.1524 -12.6573 -0.0594 20 6 1.2360 -12.4561 -0.0571 21 7 1.7308 -11.2416 -0.0504 22 6 0.9247 -10.1675 -0.0462 23 7 1.1873 -8.8717 -0.0454 24 6 -0.3514 -3.8197 -0.0147 25 7 -0.0715 -2.5410 -0.0013 26 1 -0.4850 0.8400 0.0004 27 1 2.9302 -3.8708 -0.0150 28 1 1.8706 -6.3422 -0.0275 29 1 -2.0539 -8.8583 -0.0417 30 1 -2.0507 -11.7185 -0.0566 31 1 -0.5583 -13.6581 -0.0647 32 1 1.9016 -13.3067 -0.0609 33 1 -1.3420 -4.2497 -0.0169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139372140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:23 Heat of formation + Delta-G solvation = 168.119182 kcal Electronic energy + Delta-G solvation = -21970.775844 eV Core-core repulsion = 18421.944870 eV Total energy + Delta-G solvation = -3548.830974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.27565 -39.86744 -38.88207 -37.85326 -34.93913 -34.16541 -33.09741 -31.40366 -30.20471 -29.59178 -27.84265 -25.71060 -24.66926 -23.58362 -23.07414 -20.94834 -20.21128 -19.37991 -18.69038 -17.93838 -17.31458 -16.82527 -16.64293 -15.96814 -15.40001 -15.13178 -14.72415 -14.46871 -14.33429 -14.05022 -13.44166 -13.38197 -13.15656 -12.85094 -12.66972 -12.11133 -11.64720 -11.38526 -11.22866 -10.93513 -10.84510 -10.50193 -10.19723 -10.13276 -9.45525 -9.42171 -9.12387 -8.77585 -8.50061 -8.01594 -6.63910 -6.51989 -4.18132 0.09437 0.69449 1.91296 1.99163 2.98018 3.08248 3.13128 3.13879 3.16368 3.48315 3.58550 3.85485 3.87909 3.95753 4.13337 4.34767 4.51099 4.63248 4.78537 4.96605 5.06419 5.17458 5.20710 5.24661 5.75142 6.07090 6.15836 6.32566 6.51822 6.94306 6.99741 7.11471 7.19881 7.27358 7.56929 7.90237 8.23370 8.32854 8.65271 8.87092 9.41916 9.70883 10.44101 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.054562 B = 0.002647 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.051228 B =10576.240354 C =11079.435420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.079 4.079 11 C -0.061 4.061 12 N -0.599 5.599 13 C 0.579 3.421 14 O -0.531 6.531 15 C 0.040 3.960 16 C -0.019 4.019 17 N -0.403 5.403 18 C 0.114 3.886 19 C -0.208 4.208 20 C 0.170 3.830 21 N -0.431 5.431 22 C 0.374 3.626 23 N -0.444 5.444 24 C -0.031 4.031 25 N -0.260 5.260 26 H 0.274 0.726 27 H 0.148 0.852 28 H 0.407 0.593 29 H 0.202 0.798 30 H 0.177 0.823 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.819 -24.143 -0.120 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.454 4.454 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.230 4.230 11 C -0.167 4.167 12 N -0.239 5.239 13 C 0.363 3.637 14 O -0.409 6.409 15 C -0.094 4.094 16 C -0.154 4.154 17 N -0.080 5.080 18 C -0.017 4.017 19 C -0.231 4.231 20 C -0.019 4.019 21 N -0.143 5.143 22 C 0.025 3.975 23 N -0.168 5.168 24 C -0.206 4.206 25 N -0.091 5.091 26 H 0.085 0.915 27 H 0.165 0.835 28 H 0.242 0.758 29 H 0.219 0.781 30 H 0.195 0.805 31 H 0.183 0.817 32 H 0.200 0.800 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.625 -21.578 -0.103 21.587 hybrid contribution -0.389 -1.092 -0.021 1.159 sum -1.015 -22.669 -0.124 22.693 Atomic orbital electron populations 1.70218 1.06125 1.27950 1.35395 1.25648 0.95712 1.00270 0.95504 0.85823 0.79404 0.79939 0.78951 1.19602 1.20114 1.18788 1.19888 0.91700 0.80518 1.53285 0.86560 1.44553 1.04048 1.03307 1.39046 1.21291 0.96973 0.85255 1.19478 1.17272 0.94479 0.80929 1.23976 1.42293 1.08565 1.04424 1.68656 1.16580 0.84793 0.82700 0.79605 1.90710 1.25555 1.73000 1.51594 1.20919 0.88302 0.95091 1.05116 1.22634 1.00892 0.80421 1.11410 1.43888 1.11090 1.06377 1.46670 1.22263 1.01147 0.81545 0.96751 1.21826 0.94675 0.99869 1.06699 1.23355 0.93685 0.93807 0.91085 1.67971 1.34864 0.97073 1.14356 1.21900 0.77053 0.93032 1.05521 1.70830 1.26219 0.98633 1.21115 1.24130 0.97993 0.90740 1.07780 1.78246 0.90149 1.15017 1.25725 0.91487 0.83470 0.75800 0.78101 0.80549 0.81675 0.79978 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.84 11.81 55.50 0.66 -21.18 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.27 29.55 -169.99 -5.02 14.25 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.32 -8.70 10.25 -14.81 -0.15 -8.85 16 8 H 0.12 2.81 7.83 -52.49 -0.41 2.40 16 9 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 10 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 11 C -0.06 -1.49 6.90 -83.86 -0.58 -2.06 16 12 N -0.60 -12.21 5.46 -10.93 -0.06 -12.27 16 13 C 0.58 11.41 7.79 -12.46 -0.10 11.31 16 14 O -0.53 -11.67 14.02 5.26 0.07 -11.60 16 15 C 0.04 0.65 6.94 -83.43 -0.58 0.07 16 16 C -0.02 -0.24 11.47 -16.24 -0.19 -0.43 16 17 N -0.40 -4.43 2.93 -64.13 -0.19 -4.62 16 18 C 0.11 0.68 11.05 -16.38 -0.18 0.50 16 19 C -0.21 -0.85 10.06 -39.80 -0.40 -1.25 16 20 C 0.17 1.08 11.26 -17.07 -0.19 0.89 16 21 N -0.43 -5.11 10.48 -13.67 -0.14 -5.26 16 22 C 0.37 5.26 8.90 -322.41 -2.87 2.39 16 23 N -0.44 -7.37 11.01 -11.03 -0.12 -7.49 16 24 C -0.03 -0.83 10.85 -17.03 -0.18 -1.02 16 25 N -0.26 -7.73 10.40 30.80 0.32 -7.41 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.15 3.08 8.06 -52.48 -0.42 2.66 16 28 H 0.41 7.34 8.52 -40.82 -0.35 6.99 16 29 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.18 0.36 8.06 -52.48 -0.42 -0.06 16 31 H 0.17 -0.01 8.06 -52.49 -0.42 -0.43 16 32 H 0.18 0.40 8.06 -52.48 -0.42 -0.02 16 33 H 0.18 4.64 5.91 -52.49 -0.31 4.33 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -37.47 304.06 -7.97 -45.44 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.32 Total: 9.09 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -5.71 Total: 0.52 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.42 Total: -62.28 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -37.47 -7.97 -45.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139372140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.557 kcal (2) G-P(sol) polarization free energy of solvation -37.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds