Wall clock time and date at job start Tue Mar 31 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31695 * 119.72315 * 2 1 4 4 C 1.31922 * 121.88401 * 179.97438 * 3 2 1 5 5 C 1.38358 * 121.07729 * 359.97438 * 4 3 2 6 6 C 1.38349 * 119.30604 * 0.28299 * 5 4 3 7 7 C 1.39524 * 119.71307 * 179.97438 * 2 1 3 8 8 C 1.47835 * 120.56268 * 0.02562 * 7 2 1 9 9 O 1.21562 * 119.99854 * 5.97229 * 8 7 2 10 10 N 1.34774 * 120.00617 * 185.97763 * 8 7 2 11 11 S 1.65598 * 120.00210 * 180.02562 * 10 8 7 12 12 O 1.42107 * 104.27391 * 181.06585 * 11 10 8 13 13 O 1.42095 * 104.27534 * 308.92106 * 11 10 8 14 14 C 1.81396 * 104.45091 * 64.99544 * 11 10 8 15 15 C 1.52998 * 109.47003 * 179.97438 * 14 11 10 16 16 C 1.50708 * 109.47175 * 179.97438 * 15 14 11 17 17 H 1.08002 * 119.99835 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99830 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00143 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99475 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47590 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47142 * 120.00250 * 20 18 16 23 23 H 1.48503 * 109.47179 * 239.99587 * 20 18 16 24 24 H 1.09000 * 109.47095 * 96.57245 * 1 2 3 25 25 H 1.08998 * 109.47378 * 216.57512 * 1 2 3 26 26 H 1.09005 * 109.46517 * 336.57723 * 1 2 3 27 27 H 1.07996 * 119.46190 * 180.02562 * 4 3 2 28 28 H 1.08003 * 120.34304 * 180.02562 * 5 4 3 29 29 H 1.08005 * 120.85857 * 179.69508 * 6 5 4 30 30 H 0.97006 * 119.99653 * 359.97438 * 10 8 7 31 31 H 1.08998 * 109.47525 * 299.99928 * 14 11 10 32 32 H 1.08998 * 109.47034 * 60.00364 * 14 11 10 33 33 H 1.08998 * 109.47247 * 299.99876 * 15 14 11 34 34 H 1.09000 * 109.47165 * 60.00098 * 15 14 11 35 35 H 0.97004 * 119.99683 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 0.0005 5 6 4.2366 0.0362 0.0016 6 6 3.5987 -1.1915 -0.0038 7 6 2.1985 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.2549 -2.5043 -0.1095 10 7 2.1393 -3.6564 0.1226 11 16 1.3182 -5.0945 0.1220 12 8 2.3313 -6.0765 0.2916 13 8 0.2996 -4.9168 1.0966 14 6 0.5977 -5.2036 -1.5392 15 6 -0.1953 -6.5059 -1.6666 16 6 -0.7944 -6.5963 -3.0465 17 1 -0.6260 -5.8043 -3.7612 18 6 -1.5575 -7.6900 -3.3964 19 7 -1.7621 -8.6546 -2.5262 20 14 -2.2995 -7.8023 -5.1070 21 1 -1.9229 -6.5980 -5.8901 22 1 -1.7873 -9.0175 -5.7899 23 1 -3.7786 -7.8806 -5.0009 24 1 -0.3633 -0.1176 -1.0209 25 1 -0.3634 -0.8253 0.6123 26 1 -0.3632 0.9431 0.4085 27 1 3.9735 2.1531 0.0009 28 1 5.3152 0.0907 0.0024 29 1 4.1660 -2.1105 -0.0080 30 1 3.1054 -3.6496 0.2101 31 1 -0.0670 -4.3555 -1.7035 32 1 1.3948 -5.1899 -2.2825 33 1 0.4697 -7.3538 -1.5026 34 1 -0.9923 -6.5201 -0.9232 35 1 -2.2993 -9.4239 -2.7723 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181268541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:42 Heat of formation + Delta-G solvation = -76.911746 kcal Electronic energy + Delta-G solvation = -21664.774473 eV Core-core repulsion = 18176.176610 eV Total energy + Delta-G solvation = -3488.597863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.19283 -39.40468 -36.76572 -35.68741 -34.94837 -33.93143 -33.12667 -32.65897 -31.20961 -28.08476 -25.67850 -25.18353 -22.79250 -21.94404 -21.64239 -19.48604 -18.54322 -17.69982 -16.90494 -16.62794 -16.29604 -15.95547 -15.61950 -15.27210 -15.05363 -14.56055 -14.25642 -14.00953 -13.53491 -13.47159 -12.90138 -12.60154 -12.55472 -12.40996 -12.05045 -11.84170 -11.77005 -11.67334 -11.10983 -11.03288 -10.94816 -10.48388 -10.39546 -10.37445 -10.29489 -9.83395 -9.72060 -9.39308 -9.19658 -8.51712 -6.13783 -4.19242 0.18549 0.43713 0.77725 2.25617 2.62699 3.25568 3.32871 3.36502 3.38715 3.79206 3.97228 4.10018 4.24093 4.34936 4.36429 4.48591 4.59275 4.79901 4.97218 5.17594 5.21788 5.35334 5.53157 5.56510 5.64120 5.68391 5.80758 5.99180 6.28923 6.41612 6.52589 7.25919 7.32253 7.33119 7.52107 7.79515 8.14695 8.83969 9.45568 10.97344 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.021314 B = 0.003875 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.354038 B = 7223.685032 C = 7824.077976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.199 3.801 3 N -0.491 5.491 4 C 0.134 3.866 5 C -0.190 4.190 6 C -0.033 4.033 7 C -0.199 4.199 8 C 0.585 3.415 9 O -0.476 6.476 10 N -1.056 6.056 11 S 2.565 3.435 12 O -0.952 6.952 13 O -0.935 6.935 14 C -0.574 4.574 15 C 0.029 3.971 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.281 1.281 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.074 0.926 27 H 0.163 0.837 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.425 0.575 31 H 0.133 0.867 32 H 0.122 0.878 33 H 0.034 0.966 34 H 0.037 0.963 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.385 18.039 4.663 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.061 3.939 3 N -0.200 5.200 4 C -0.024 4.024 5 C -0.210 4.210 6 C -0.059 4.059 7 C -0.206 4.206 8 C 0.372 3.628 9 O -0.348 6.348 10 N -0.817 5.817 11 S 2.665 3.335 12 O -0.943 6.943 13 O -0.925 6.925 14 C -0.709 4.709 15 C -0.010 4.010 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 H 0.108 0.892 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.180 0.820 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.261 0.739 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.900 18.080 5.406 22.310 hybrid contribution 0.846 -0.659 -1.440 1.796 sum 12.747 17.421 3.966 21.947 Atomic orbital electron populations 1.21177 0.87111 1.04467 1.04826 1.21653 0.97885 0.86375 0.87983 1.67730 1.09968 1.28491 1.13822 1.23090 0.89465 0.98928 0.90871 1.22101 1.02007 0.92877 1.04033 1.21818 0.92928 0.99335 0.91805 1.20692 0.94614 0.94500 1.10757 1.17912 0.86938 0.83645 0.74314 1.90953 1.12441 1.86612 1.44828 1.55419 1.22000 1.24128 1.80107 1.06791 0.74713 0.72008 0.79966 1.93596 1.57945 1.55846 1.86921 1.93601 1.58306 1.83359 1.57243 1.30337 1.11948 1.11606 1.16982 1.19008 0.94871 0.86919 1.00229 1.21011 1.32056 1.05682 0.97085 0.91894 1.25062 0.96109 0.95510 0.97781 1.69961 1.38996 1.09169 1.34677 0.86392 0.79000 0.78085 0.83682 1.19620 1.20800 1.20737 0.89165 0.87553 0.90751 0.81998 0.83804 0.84006 0.73919 0.84920 0.86001 0.94735 0.94495 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.88 36.00 0.32 -1.05 16 2 C 0.20 2.31 6.82 -82.17 -0.56 1.75 16 3 N -0.49 -5.25 10.26 -9.15 -0.09 -5.34 16 4 C 0.13 1.01 11.17 -17.47 -0.20 0.81 16 5 C -0.19 -1.20 10.10 -39.50 -0.40 -1.60 16 6 C -0.03 -0.25 9.63 -38.87 -0.37 -0.63 16 7 C -0.20 -2.19 5.89 -104.82 -0.62 -2.81 16 8 C 0.58 7.91 7.45 -12.33 -0.09 7.82 16 9 O -0.48 -7.85 11.47 -11.83 -0.14 -7.98 16 10 N -1.06 -13.26 5.56 30.53 0.17 -13.09 16 11 S 2.56 45.49 5.11 -107.50 -0.55 44.94 16 12 O -0.95 -18.38 18.08 -57.54 -1.04 -19.42 16 13 O -0.93 -19.97 17.04 -64.79 -1.10 -21.08 16 14 C -0.57 -11.14 5.82 37.16 0.22 -10.92 16 15 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.11 1.38 5.84 -51.93 -0.30 1.07 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 29 H 0.14 0.67 6.57 -52.48 -0.34 0.32 16 30 H 0.43 3.55 6.94 -34.47 -0.24 3.32 16 31 H 0.13 2.51 7.19 -51.93 -0.37 2.14 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -36.68 316.38 -8.28 -44.97 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.76 Total: 0.83 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.25 Total: -19.15 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.81 Total: -44.09 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.28 Total: -48.48 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 45.49 SS G_CDS: -0.55 Total: 44.94 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.68 -8.28 -44.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181268541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.944 kcal (2) G-P(sol) polarization free energy of solvation -36.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds