Wall clock time and date at job start Tue Mar 31 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 S 1.65603 * 119.99984 * 2 1 4 4 O 1.42093 * 106.40332 * 311.46683 * 3 2 1 5 5 O 1.42099 * 106.40185 * 178.54016 * 3 2 1 6 6 C 1.76202 * 107.21358 * 65.00567 * 3 2 1 7 7 C 1.38404 * 119.92615 * 89.99833 * 6 3 2 8 8 C 1.38350 * 120.30352 * 180.27394 * 7 6 3 9 9 C 1.37962 * 120.15064 * 359.49019 * 8 7 6 10 10 C 1.50705 * 120.07241 * 180.25372 * 9 8 7 11 11 C 1.39618 * 119.84848 * 0.50950 * 9 8 7 12 12 C 1.47727 * 120.15208 * 179.72442 * 11 9 8 13 13 O 1.21584 * 120.00238 * 353.76927 * 12 11 9 14 14 N 1.34779 * 119.99891 * 173.77102 * 12 11 9 15 15 C 1.36871 * 119.99805 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00289 * 359.97438 * 15 14 12 17 17 C 1.39046 * 119.99985 * 180.02562 * 15 14 12 18 18 N 1.31365 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47392 * 89.99324 * 19 17 15 21 21 H 1.48503 * 109.47063 * 209.99873 * 19 17 15 22 22 H 1.48506 * 109.46494 * 329.99133 * 19 17 15 23 23 C 1.37918 * 119.92310 * 270.01694 * 6 3 2 24 24 H 1.08997 * 109.47576 * 59.99560 * 1 2 3 25 25 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47264 * 299.99299 * 1 2 3 27 27 H 0.97003 * 120.00534 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.84388 * 0.02562 * 7 6 3 29 29 H 1.07999 * 119.92173 * 179.75153 * 8 7 6 30 30 H 1.08999 * 109.46773 * 263.66284 * 10 9 8 31 31 H 1.08997 * 109.47762 * 23.66839 * 10 9 8 32 32 H 1.09006 * 109.46952 * 143.67194 * 10 9 8 33 33 H 0.97004 * 120.00148 * 359.97438 * 14 12 11 34 34 H 0.97006 * 119.99830 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.07394 * 359.96370 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2330 -1.0214 5 8 3.6737 1.1003 0.0347 6 6 1.9378 2.2413 1.5255 7 6 2.7401 2.0140 2.6301 8 6 2.4651 2.6393 3.8332 9 6 1.3939 3.5026 3.9365 10 6 1.0993 4.1871 5.2464 11 6 0.5803 3.7365 2.8262 12 6 -0.5720 4.6549 2.9310 13 8 -0.8820 5.1207 4.0104 14 7 -1.2797 4.9765 1.8300 15 6 -2.3470 5.8278 1.9269 16 1 -2.6224 6.2416 2.8858 17 6 -3.0774 6.1592 0.7912 18 7 -2.7428 5.6556 -0.3751 19 14 -4.5346 7.3206 0.9236 20 1 -4.0724 8.7187 0.7314 21 1 -5.5342 6.9816 -0.1209 22 1 -5.1555 7.1845 2.2657 23 6 0.8607 3.0979 1.6161 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 3.5824 1.3424 2.5535 29 1 3.0928 2.4543 4.6923 30 1 0.3376 3.6251 5.7867 31 1 2.0092 4.2339 5.8447 32 1 0.7379 5.1976 5.0551 33 1 -1.0321 4.6052 0.9687 34 1 -3.2521 5.8871 -1.1675 35 1 0.2356 3.2746 0.7533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195454083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:12 Heat of formation + Delta-G solvation = -84.908196 kcal Electronic energy + Delta-G solvation = -22081.625673 eV Core-core repulsion = 18592.681058 eV Total energy + Delta-G solvation = -3488.944615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.67278 -37.50132 -37.16079 -35.78084 -35.03637 -34.36444 -32.57514 -31.68180 -30.60930 -27.19293 -26.03674 -25.20501 -23.24870 -21.71633 -20.26192 -19.21620 -18.35346 -17.64985 -17.31543 -16.31274 -15.96082 -15.32299 -15.00017 -14.74972 -14.47577 -14.18305 -13.97241 -13.77339 -13.68382 -12.88794 -12.85489 -12.75848 -12.05661 -12.01625 -11.95471 -11.85980 -11.85470 -11.63979 -11.55150 -11.41615 -11.19078 -10.69051 -10.47853 -10.35435 -9.69850 -9.68525 -8.93081 -8.74783 -8.38102 -8.14660 -6.61975 -3.95832 0.44295 0.95014 1.27206 2.97652 3.10778 3.18128 3.23256 3.40080 3.78967 4.02233 4.27938 4.40483 4.73117 4.91062 4.97436 5.02766 5.19601 5.21458 5.41996 5.44534 5.65554 5.75577 5.78060 5.81948 5.86340 6.12407 6.16217 6.24956 6.31180 6.54818 6.82705 6.86374 7.05378 7.36569 7.87211 8.41023 8.97635 9.31911 9.86326 10.53920 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.005372 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.097203 B = 5211.002207 C = 6604.424420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.121 6.121 3 S 2.698 3.302 4 O -0.950 6.950 5 O -0.966 6.966 6 C -0.688 4.688 7 C -0.020 4.020 8 C -0.151 4.151 9 C 0.014 3.986 10 C -0.123 4.123 11 C -0.117 4.117 12 C 0.460 3.540 13 O -0.590 6.590 14 N -0.539 5.539 15 C -0.297 4.297 16 H 0.110 0.890 17 C 0.025 3.975 18 N -0.882 5.882 19 Si 0.936 3.064 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.006 4.006 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.416 0.584 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.394 0.606 34 H 0.278 0.722 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.633 -11.750 2.057 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.881 5.881 3 S 2.787 3.213 4 O -0.940 6.940 5 O -0.956 6.956 6 C -0.776 4.776 7 C -0.040 4.040 8 C -0.170 4.170 9 C 0.012 3.988 10 C -0.179 4.179 11 C -0.121 4.121 12 C 0.249 3.751 13 O -0.478 6.478 14 N -0.172 5.172 15 C -0.427 4.427 16 H 0.128 0.872 17 C -0.180 4.180 18 N -0.520 5.520 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.026 4.026 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.249 0.751 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.681 -10.915 1.858 13.475 hybrid contribution -0.669 -0.031 0.110 0.679 sum 7.012 -10.946 1.967 13.147 Atomic orbital electron populations 1.21541 0.78118 1.04112 1.02777 1.55317 1.16348 1.24204 1.92202 1.01764 0.72750 0.72704 0.74064 1.93625 1.78429 1.68067 1.53894 1.93564 1.30992 1.83629 1.87433 1.30597 1.08063 1.17337 1.21566 1.20838 0.95925 0.95955 0.91273 1.21089 0.98802 0.99144 0.97994 1.20365 0.91290 0.91618 0.95498 1.21164 1.00620 1.04007 0.92099 1.20352 0.98323 0.99977 0.93492 1.17549 0.85356 0.86746 0.85476 1.90538 1.71105 1.59122 1.27048 1.41957 1.26306 1.40191 1.08746 1.19841 1.04778 1.21558 0.96509 0.87248 1.25440 0.99641 0.98341 0.94537 1.69602 1.40474 1.42818 0.99137 0.85761 0.79875 0.79740 0.78398 1.20089 1.20640 1.19155 1.21159 0.93100 0.90888 0.97501 0.90910 0.90019 0.91820 0.75060 0.84616 0.85107 0.90457 0.93025 0.87468 0.77077 0.91162 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.14 59.84 0.67 1.45 16 2 N -1.12 -11.26 6.19 -16.64 -0.10 -11.36 16 3 S 2.70 37.46 5.74 -107.50 -0.62 36.84 16 4 O -0.95 -16.63 17.00 -57.17 -0.97 -17.60 16 5 O -0.97 -14.74 17.27 -57.17 -0.99 -15.73 16 6 C -0.69 -10.44 5.94 -39.64 -0.24 -10.67 16 7 C -0.02 -0.27 9.52 -39.48 -0.38 -0.65 16 8 C -0.15 -2.12 9.66 -39.64 -0.38 -2.50 16 9 C 0.01 0.24 5.92 -104.21 -0.62 -0.37 16 10 C -0.12 -1.99 8.73 36.01 0.31 -1.68 16 11 C -0.12 -2.31 5.87 -104.97 -0.62 -2.92 16 12 C 0.46 10.97 7.65 -12.38 -0.09 10.87 16 13 O -0.59 -15.23 12.92 5.29 0.07 -15.16 16 14 N -0.54 -13.57 5.23 -11.87 -0.06 -13.64 16 15 C -0.30 -8.00 9.68 -15.00 -0.15 -8.14 16 16 H 0.11 3.04 7.15 -52.48 -0.38 2.66 16 17 C 0.02 0.64 5.50 -17.45 -0.10 0.55 16 18 N -0.88 -23.22 13.05 55.50 0.72 -22.50 16 19 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.01 -0.10 9.00 -39.17 -0.35 -0.45 16 24 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.42 3.01 8.96 -34.47 -0.31 2.70 16 28 H 0.14 1.50 7.60 -52.49 -0.40 1.10 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 32 H 0.11 2.06 5.86 -51.93 -0.30 1.76 16 33 H 0.39 9.60 5.97 -40.82 -0.24 9.35 16 34 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.14 2.57 6.01 -52.49 -0.32 2.25 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -33.22 315.35 -7.77 -40.99 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -3.61 Total: 12.83 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -1.93 Total: -14.53 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.56 Total: -47.49 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -1.89 Total: -48.49 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 37.46 SS G_CDS: -0.62 Total: 36.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.22 -7.77 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195454083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.921 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds