Wall clock time and date at job start Tue Mar 31 2020 03:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 S 1.65603 * 119.99984 * 2 1 4 4 O 1.42093 * 106.40332 * 311.46683 * 3 2 1 5 5 O 1.42099 * 106.40185 * 178.54016 * 3 2 1 6 6 C 1.76202 * 107.21358 * 65.00567 * 3 2 1 7 7 C 1.38404 * 119.92615 * 89.99833 * 6 3 2 8 8 C 1.38350 * 120.30352 * 180.27394 * 7 6 3 9 9 C 1.37962 * 120.15064 * 359.49019 * 8 7 6 10 10 C 1.50705 * 120.07241 * 180.25372 * 9 8 7 11 11 C 1.39618 * 119.84848 * 0.50950 * 9 8 7 12 12 C 1.47727 * 120.15208 * 179.72442 * 11 9 8 13 13 O 1.21584 * 120.00238 * 353.76927 * 12 11 9 14 14 N 1.34779 * 119.99891 * 173.77102 * 12 11 9 15 15 C 1.36871 * 119.99805 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00289 * 359.97438 * 15 14 12 17 17 C 1.39046 * 119.99985 * 180.02562 * 15 14 12 18 18 N 1.31365 * 119.99821 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47392 * 89.99324 * 19 17 15 21 21 H 1.48503 * 109.47063 * 209.99873 * 19 17 15 22 22 H 1.48506 * 109.46494 * 329.99133 * 19 17 15 23 23 C 1.37918 * 119.92310 * 270.01694 * 6 3 2 24 24 H 1.08997 * 109.47576 * 59.99560 * 1 2 3 25 25 H 1.09004 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47264 * 299.99299 * 1 2 3 27 27 H 0.97003 * 120.00534 * 180.02562 * 2 1 3 28 28 H 1.08000 * 119.84388 * 0.02562 * 7 6 3 29 29 H 1.07999 * 119.92173 * 179.75153 * 8 7 6 30 30 H 1.08999 * 109.46773 * 263.66284 * 10 9 8 31 31 H 1.08997 * 109.47762 * 23.66839 * 10 9 8 32 32 H 1.09006 * 109.46952 * 143.67194 * 10 9 8 33 33 H 0.97004 * 120.00148 * 359.97438 * 14 12 11 34 34 H 0.97006 * 119.99830 * 180.02562 * 18 17 15 35 35 H 1.07998 * 120.07394 * 359.96370 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2330 -1.0214 5 8 3.6737 1.1003 0.0347 6 6 1.9378 2.2413 1.5255 7 6 2.7401 2.0140 2.6301 8 6 2.4651 2.6393 3.8332 9 6 1.3939 3.5026 3.9365 10 6 1.0993 4.1871 5.2464 11 6 0.5803 3.7365 2.8262 12 6 -0.5720 4.6549 2.9310 13 8 -0.8820 5.1207 4.0104 14 7 -1.2797 4.9765 1.8300 15 6 -2.3470 5.8278 1.9269 16 1 -2.6224 6.2416 2.8858 17 6 -3.0774 6.1592 0.7912 18 7 -2.7428 5.6556 -0.3751 19 14 -4.5346 7.3206 0.9236 20 1 -4.0724 8.7187 0.7314 21 1 -5.5342 6.9816 -0.1209 22 1 -5.1555 7.1845 2.2657 23 6 0.8607 3.0979 1.6161 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.9500 -0.8400 -0.0004 28 1 3.5824 1.3424 2.5535 29 1 3.0928 2.4543 4.6923 30 1 0.3376 3.6251 5.7867 31 1 2.0092 4.2339 5.8447 32 1 0.7379 5.1976 5.0551 33 1 -1.0321 4.6052 0.9687 34 1 -3.2521 5.8871 -1.1675 35 1 0.2356 3.2746 0.7533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195454083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:11 Heat of formation + Delta-G solvation = -111.237453 kcal Electronic energy + Delta-G solvation = -22082.767396 eV Core-core repulsion = 18592.681058 eV Total energy + Delta-G solvation = -3490.086338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19691 -39.16890 -38.38500 -37.01320 -36.26296 -35.91439 -34.03475 -33.41053 -32.10825 -28.54673 -27.04792 -26.87464 -24.71594 -23.02489 -21.77282 -20.59052 -20.02490 -18.94000 -18.65435 -17.66653 -17.23833 -16.60864 -16.58908 -16.33218 -15.85708 -15.76104 -15.46440 -15.10303 -14.65832 -14.50034 -14.31632 -13.81503 -13.62092 -13.30589 -13.27363 -13.21355 -13.15096 -13.04850 -12.92259 -12.77333 -12.54986 -12.43759 -12.11806 -11.88559 -11.59169 -10.59656 -10.27060 -10.24235 -10.11860 -10.03554 -8.55999 -6.02262 -0.68891 -0.33296 -0.06504 1.38021 1.40625 1.54337 1.81465 2.08636 2.24569 2.53252 2.74621 2.99180 3.23318 3.29668 3.68093 3.80781 3.88027 4.18981 4.22796 4.37147 4.49098 4.62519 4.62892 4.80469 4.82235 4.84173 4.93116 4.99876 5.02523 5.24310 5.32616 5.53283 5.75404 5.92590 6.14473 6.46160 6.99918 7.39109 7.94209 8.60894 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.005372 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.097203 B = 5211.002207 C = 6604.424420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.103 6.103 3 S 2.720 3.280 4 O -0.990 6.990 5 O -0.974 6.974 6 C -0.690 4.690 7 C -0.003 4.003 8 C -0.137 4.137 9 C 0.006 3.994 10 C -0.119 4.119 11 C -0.151 4.151 12 C 0.463 3.537 13 O -0.615 6.615 14 N -0.556 5.556 15 C -0.336 4.336 16 H 0.089 0.911 17 C -0.011 4.011 18 N -0.911 5.911 19 Si 1.001 2.999 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.010 4.010 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.433 0.567 28 H 0.176 0.824 29 H 0.178 0.822 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.394 0.606 34 H 0.283 0.717 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -13.832 2.803 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.867 5.867 3 S 2.808 3.192 4 O -0.980 6.980 5 O -0.964 6.964 6 C -0.777 4.777 7 C -0.023 4.023 8 C -0.156 4.156 9 C 0.005 3.995 10 C -0.175 4.175 11 C -0.156 4.156 12 C 0.253 3.747 13 O -0.504 6.504 14 N -0.190 5.190 15 C -0.465 4.465 16 H 0.107 0.893 17 C -0.213 4.213 18 N -0.550 5.550 19 Si 0.824 3.176 20 H -0.196 1.196 21 H -0.193 1.193 22 H -0.192 1.192 23 C -0.030 4.030 24 H 0.079 0.921 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.270 0.730 28 H 0.193 0.807 29 H 0.195 0.805 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.492 -13.020 2.613 16.324 hybrid contribution -1.023 0.433 -0.030 1.111 sum 8.469 -12.587 2.583 15.390 Atomic orbital electron populations 1.21720 0.77525 1.06267 1.01916 1.54910 1.16519 1.23632 1.91591 1.01002 0.72281 0.72816 0.73085 1.93585 1.79153 1.69855 1.55420 1.93544 1.31721 1.83826 1.87352 1.30819 1.07190 1.16696 1.22967 1.21420 0.95688 0.94898 0.90256 1.21538 0.97450 0.96972 0.99608 1.20626 0.91824 0.92336 0.94737 1.21078 1.02404 1.01574 0.92424 1.20126 0.98338 1.01323 0.95763 1.18320 0.85688 0.86111 0.84630 1.90512 1.72056 1.59945 1.27894 1.41985 1.26845 1.41048 1.09144 1.19811 1.06729 1.23649 0.96333 0.89270 1.26251 1.01774 0.99424 0.93828 1.69676 1.41692 1.44018 0.99639 0.84810 0.76701 0.77662 0.78441 1.19553 1.19290 1.19224 1.21030 0.94046 0.91558 0.96391 0.92134 0.86353 0.92531 0.72971 0.80693 0.80494 0.90746 0.88857 0.91205 0.77063 0.90748 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 11.14 127.77 1.42 2.69 16 2 N -1.10 -19.44 6.19 -206.55 -1.28 -20.72 16 3 S 2.72 70.90 5.74 -56.49 -0.32 70.57 16 4 O -0.99 -34.70 17.00 -128.00 -2.18 -36.88 16 5 O -0.97 -26.88 17.27 -128.00 -2.21 -29.09 16 6 C -0.69 -19.65 5.94 22.23 0.13 -19.52 16 7 C 0.00 -0.07 9.52 22.34 0.21 0.14 16 8 C -0.14 -3.24 9.66 22.23 0.21 -3.03 16 9 C 0.01 0.21 5.92 -19.60 -0.12 0.09 16 10 C -0.12 -3.72 8.73 71.24 0.62 -3.10 16 11 C -0.15 -6.08 5.87 -20.09 -0.12 -6.20 16 12 C 0.46 23.26 7.65 86.75 0.66 23.92 16 13 O -0.61 -33.46 12.92 -3.98 -0.05 -33.52 16 14 N -0.56 -29.80 5.23 -309.73 -1.62 -31.42 16 15 C -0.34 -19.13 9.68 84.10 0.81 -18.32 16 16 H 0.09 5.29 7.15 -2.91 -0.02 5.27 16 17 C -0.01 -0.61 5.50 84.96 0.47 -0.14 16 18 N -0.91 -49.68 13.05 21.68 0.28 -49.40 16 19 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C -0.01 -0.34 9.00 22.54 0.20 -0.14 16 24 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 25 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.43 4.78 8.96 -96.74 -0.87 3.92 16 28 H 0.18 2.78 7.60 -2.91 -0.02 2.76 16 29 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 32 H 0.07 2.75 5.86 -2.38 -0.01 2.74 16 33 H 0.39 20.58 5.97 -92.71 -0.55 20.03 16 34 H 0.28 14.32 8.31 -92.70 -0.77 13.55 16 35 H 0.13 4.90 6.01 -2.91 -0.02 4.88 16 Total: -1.00 -75.87 315.35 -1.10 -76.97 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.26 Total: 32.73 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.52 Total: -23.60 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -2.61 Total: -101.54 kcal Atomic # 8 Polarization: -95.05 SS G_CDS: -4.44 Total: -99.48 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 70.90 SS G_CDS: -0.32 Total: 70.57 kcal Total: -75.87 -1.10 -76.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195454083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.269 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds