Wall clock time and date at job start Tue Mar 31 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48494 * 109.47484 * 270.00437 * 3 2 1 5 5 H 1.48495 * 109.47183 * 149.99985 * 3 2 1 6 6 H 1.48505 * 109.46888 * 30.00177 * 3 2 1 7 7 C 1.38799 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00266 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00191 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47391 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99663 * 355.18711 * 11 10 9 13 13 N 1.34773 * 120.00194 * 175.18256 * 11 10 9 14 14 C 1.46502 * 120.00014 * 186.02381 * 13 11 10 15 15 C 1.53001 * 117.49912 * 16.47561 * 14 13 11 16 16 C 1.53003 * 117.49688 * 307.81675 * 14 13 11 17 17 C 1.46493 * 120.00067 * 6.02695 * 13 11 10 18 18 H 1.09000 * 110.54435 * 180.70293 * 17 13 11 19 19 C 1.54229 * 110.60851 * 57.85071 * 17 13 11 20 20 C 1.51681 * 103.38558 * 241.52162 * 19 17 13 21 21 O 1.21224 * 125.36796 * 179.97438 * 20 19 17 22 22 N 1.33881 * 109.23810 * 359.87540 * 20 19 17 23 23 C 1.33874 * 114.47613 * 0.08230 * 22 20 19 24 24 O 1.21226 * 125.39955 * 179.97438 * 23 22 20 25 25 H 0.97001 * 120.00113 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46655 * 300.00274 * 10 9 7 27 27 H 1.09005 * 109.46918 * 59.99371 * 10 9 7 28 28 H 1.08998 * 115.55039 * 162.14649 * 14 13 11 29 29 H 1.08999 * 117.49996 * 0.02562 * 15 14 13 30 30 H 1.08997 * 117.49670 * 145.01936 * 15 14 13 31 31 H 1.09004 * 117.49589 * 214.97740 * 16 14 13 32 32 H 1.08990 * 117.50051 * 359.97438 * 16 14 13 33 33 H 1.09005 * 110.60286 * 0.02562 * 19 17 13 34 34 H 1.08995 * 110.60761 * 122.96976 * 19 17 13 35 35 H 0.97005 * 122.76135 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 3.5478 1.4401 0.7000 6 1 1.4477 2.6526 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9874 -5.3028 -0.0036 12 8 0.7946 -5.5037 0.0848 13 7 2.8402 -6.3416 -0.1024 14 6 2.3214 -7.7052 -0.2360 15 6 0.8550 -7.8665 -0.6418 16 6 1.2905 -8.1727 0.7934 17 6 4.2861 -6.1074 -0.0762 18 1 4.8278 -7.0477 -0.1788 19 6 4.6954 -5.3841 1.2230 20 6 5.2853 -4.0778 0.7267 21 8 5.7360 -3.1994 1.4301 22 7 5.2315 -4.0494 -0.6107 23 6 4.6886 -5.1392 -1.1673 24 8 4.5422 -5.3215 -2.3568 25 1 -0.4850 -0.8400 0.0004 26 1 3.1244 -3.7305 -0.8928 27 1 3.1245 -3.7321 0.8872 28 1 3.0309 -8.4438 -0.6089 29 1 0.2764 -6.9581 -0.8098 30 1 0.5999 -8.7114 -1.2814 31 1 1.3216 -9.2191 1.0974 32 1 0.9987 -7.4661 1.5702 33 1 3.8232 -5.1990 1.8500 34 1 5.4427 -5.9632 1.7654 35 1 5.5581 -3.3003 -1.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263745449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:56 Heat of formation + Delta-G solvation = -41.924251 kcal Electronic energy + Delta-G solvation = -22776.882130 eV Core-core repulsion = 19289.801439 eV Total energy + Delta-G solvation = -3487.080692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.55686 -40.00662 -38.77040 -36.51228 -36.18629 -34.50181 -32.59872 -30.66351 -29.54807 -26.15945 -24.95321 -23.25956 -22.39036 -22.34143 -21.42580 -19.55820 -18.41194 -18.11322 -17.43431 -16.98954 -16.00566 -15.90685 -15.75929 -15.12392 -14.81488 -14.68407 -14.23813 -14.03870 -13.88727 -13.44613 -13.41770 -13.16744 -12.56390 -12.47940 -12.09335 -11.99977 -11.77130 -11.19841 -10.93965 -10.89643 -10.52755 -10.47195 -10.26686 -10.20963 -9.66722 -9.43331 -9.06955 -8.65053 -8.33469 -6.78276 -6.68466 -4.08451 1.16389 2.14752 2.38984 2.59623 2.74627 3.08748 3.33429 3.37745 3.54151 3.67750 3.75622 3.84808 4.02623 4.15104 4.35178 4.56944 4.75783 4.87091 5.00089 5.04428 5.15155 5.18903 5.29865 5.42211 5.43471 5.63003 5.69673 5.80997 5.98042 6.26264 6.35339 6.58368 6.97969 7.05497 7.60077 7.85973 8.10727 8.43701 9.19490 10.75285 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.006190 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.637730 B = 4522.677627 C = 5615.377068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.038 3.962 3 Si 1.084 2.916 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.607 4.607 8 H 0.065 0.935 9 S -0.101 6.101 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.486 6.486 13 N -0.576 5.576 14 C 0.069 3.931 15 C -0.189 4.189 16 C -0.183 4.183 17 C 0.119 3.881 18 H 0.147 0.853 19 C -0.177 4.177 20 C 0.531 3.469 21 O -0.466 6.466 22 N -0.681 5.681 23 C 0.519 3.481 24 O -0.462 6.462 25 H 0.277 0.723 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.452 -16.951 1.206 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.172 4.172 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.755 4.755 8 H 0.084 0.916 9 S 0.125 5.875 10 C -0.303 4.303 11 C 0.321 3.679 12 O -0.359 6.359 13 N -0.311 5.311 14 C -0.035 4.035 15 C -0.226 4.226 16 C -0.222 4.222 17 C 0.010 3.990 18 H 0.165 0.835 19 C -0.217 4.217 20 C 0.318 3.682 21 O -0.335 6.335 22 N -0.348 5.348 23 C 0.304 3.696 24 O -0.331 6.331 25 H 0.090 0.910 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 9.554 -15.371 1.083 18.131 hybrid contribution 2.033 -0.952 -0.332 2.269 sum 11.587 -16.323 0.751 20.032 Atomic orbital electron populations 1.70790 1.06681 1.30898 1.43206 1.26046 0.96274 1.02122 0.92790 0.83324 0.74617 0.73920 0.77133 1.20977 1.21090 1.20371 1.23685 0.95971 0.91918 1.63944 0.91626 1.84802 1.06963 0.98694 1.97022 1.24017 1.06403 0.95335 1.04522 1.20340 0.86378 0.85863 0.75280 1.90579 1.15022 1.84434 1.45887 1.47181 1.03314 1.06326 1.74243 1.21740 0.92811 0.83100 1.05826 1.23854 0.96202 1.05304 0.97252 1.23299 1.03223 1.01635 0.94007 1.21710 0.84012 1.00658 0.92602 0.83522 1.23251 1.05201 0.94571 0.98708 1.20626 0.77048 0.88937 0.81610 1.90866 1.42364 1.40953 1.59346 1.44867 1.57661 1.21726 1.10559 1.20982 0.75793 0.82877 0.89952 1.90841 1.50071 1.76821 1.15332 0.91030 0.89088 0.88951 0.85069 0.84486 0.89031 0.88537 0.88234 0.85279 0.84809 0.73778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.28 13.67 55.49 0.76 -26.52 16 2 C 0.04 1.12 5.49 -17.43 -0.10 1.02 16 3 Si 1.08 25.26 29.92 -169.99 -5.09 20.17 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.61 -17.43 9.50 30.94 0.29 -17.13 16 8 H 0.07 1.83 7.80 -52.49 -0.41 1.43 16 9 S -0.10 -2.67 19.61 -107.50 -2.11 -4.78 16 10 C -0.15 -3.04 3.85 36.00 0.14 -2.90 16 11 C 0.53 9.43 6.70 -10.99 -0.07 9.36 16 12 O -0.49 -9.91 11.62 5.56 0.06 -9.84 16 13 N -0.58 -7.31 2.85 -158.82 -0.45 -7.76 16 14 C 0.07 0.73 6.59 -67.93 -0.45 0.29 16 15 C -0.19 -2.36 9.63 -26.69 -0.26 -2.62 16 16 C -0.18 -1.99 9.88 -26.69 -0.26 -2.25 16 17 C 0.12 1.12 3.60 -68.14 -0.25 0.88 16 18 H 0.15 0.74 7.90 -51.93 -0.41 0.33 16 19 C -0.18 -1.58 5.97 -26.76 -0.16 -1.74 16 20 C 0.53 6.71 6.36 -10.90 -0.07 6.64 16 21 O -0.47 -7.62 18.02 5.61 0.10 -7.52 16 22 N -0.68 -8.30 4.29 -11.27 -0.05 -8.35 16 23 C 0.52 6.46 5.59 -11.08 -0.06 6.40 16 24 O -0.46 -7.20 18.02 5.60 0.10 -7.10 16 25 H 0.28 8.73 7.13 -40.82 -0.29 8.44 16 26 H 0.09 1.79 5.01 -51.92 -0.26 1.53 16 27 H 0.09 1.74 4.49 -51.91 -0.23 1.51 16 28 H 0.13 0.95 8.03 -51.93 -0.42 0.53 16 29 H 0.14 2.27 5.23 -52.09 -0.27 2.00 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.31 7.59 -51.93 -0.39 0.92 16 33 H 0.13 1.34 6.50 -51.93 -0.34 1.01 16 34 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.42 4.91 8.96 -40.82 -0.37 4.54 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -36.89 305.52 -6.76 -43.65 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.45 Total: 5.49 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.24 Total: -2.05 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.26 Total: -42.63 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.27 Total: -24.46 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.09 Total: 20.17 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.11 Total: -4.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.89 -6.76 -43.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263745449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.729 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds