Wall clock time and date at job start Tue Mar 31 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48494 * 109.47484 * 270.00437 * 3 2 1 5 5 H 1.48495 * 109.47183 * 149.99985 * 3 2 1 6 6 H 1.48505 * 109.46888 * 30.00177 * 3 2 1 7 7 C 1.38799 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00266 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00191 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47391 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99663 * 355.18711 * 11 10 9 13 13 N 1.34773 * 120.00194 * 175.18256 * 11 10 9 14 14 C 1.46502 * 120.00014 * 186.02381 * 13 11 10 15 15 C 1.53001 * 117.49912 * 16.47561 * 14 13 11 16 16 C 1.53003 * 117.49688 * 307.81675 * 14 13 11 17 17 C 1.46493 * 120.00067 * 6.02695 * 13 11 10 18 18 H 1.09000 * 110.54435 * 180.70293 * 17 13 11 19 19 C 1.54229 * 110.60851 * 57.85071 * 17 13 11 20 20 C 1.51681 * 103.38558 * 241.52162 * 19 17 13 21 21 O 1.21224 * 125.36796 * 179.97438 * 20 19 17 22 22 N 1.33881 * 109.23810 * 359.87540 * 20 19 17 23 23 C 1.33874 * 114.47613 * 0.08230 * 22 20 19 24 24 O 1.21226 * 125.39955 * 179.97438 * 23 22 20 25 25 H 0.97001 * 120.00113 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46655 * 300.00274 * 10 9 7 27 27 H 1.09005 * 109.46918 * 59.99371 * 10 9 7 28 28 H 1.08998 * 115.55039 * 162.14649 * 14 13 11 29 29 H 1.08999 * 117.49996 * 0.02562 * 15 14 13 30 30 H 1.08997 * 117.49670 * 145.01936 * 15 14 13 31 31 H 1.09004 * 117.49589 * 214.97740 * 16 14 13 32 32 H 1.08990 * 117.50051 * 359.97438 * 16 14 13 33 33 H 1.09005 * 110.60286 * 0.02562 * 19 17 13 34 34 H 1.08995 * 110.60761 * 122.96976 * 19 17 13 35 35 H 0.97005 * 122.76135 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 3.5478 1.4401 0.7000 6 1 1.4477 2.6526 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9874 -5.3028 -0.0036 12 8 0.7946 -5.5037 0.0848 13 7 2.8402 -6.3416 -0.1024 14 6 2.3214 -7.7052 -0.2360 15 6 0.8550 -7.8665 -0.6418 16 6 1.2905 -8.1727 0.7934 17 6 4.2861 -6.1074 -0.0762 18 1 4.8278 -7.0477 -0.1788 19 6 4.6954 -5.3841 1.2230 20 6 5.2853 -4.0778 0.7267 21 8 5.7360 -3.1994 1.4301 22 7 5.2315 -4.0494 -0.6107 23 6 4.6886 -5.1392 -1.1673 24 8 4.5422 -5.3215 -2.3568 25 1 -0.4850 -0.8400 0.0004 26 1 3.1244 -3.7305 -0.8928 27 1 3.1245 -3.7321 0.8872 28 1 3.0309 -8.4438 -0.6089 29 1 0.2764 -6.9581 -0.8098 30 1 0.5999 -8.7114 -1.2814 31 1 1.3216 -9.2191 1.0974 32 1 0.9987 -7.4661 1.5702 33 1 3.8232 -5.1990 1.8500 34 1 5.4427 -5.9632 1.7654 35 1 5.5581 -3.3003 -1.1334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263745449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:55 Heat of formation + Delta-G solvation = -70.801303 kcal Electronic energy + Delta-G solvation = -22778.134333 eV Core-core repulsion = 19289.801439 eV Total energy + Delta-G solvation = -3488.332895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = -0.02 seconds Orbital eigenvalues (eV) -43.58239 -41.20785 -39.87410 -37.67852 -37.23807 -35.52925 -34.84086 -31.69493 -31.00036 -27.24798 -27.07333 -24.39251 -23.28973 -23.26074 -22.38144 -20.96427 -20.27637 -19.15937 -18.60954 -18.12131 -17.16252 -17.05403 -16.96795 -16.63236 -16.19870 -15.82368 -15.67506 -15.40585 -15.07401 -14.85194 -14.54138 -14.39498 -14.15339 -14.04957 -13.76018 -12.96834 -12.87973 -12.80744 -12.21627 -12.02587 -11.87528 -11.72752 -11.50469 -11.43685 -11.22049 -11.18216 -10.77260 -10.45415 -9.71200 -9.00938 -8.98187 -6.37396 0.13816 0.91224 1.09102 1.32544 1.44620 1.53932 1.65089 1.73323 1.78172 2.23150 2.79106 2.80889 2.93825 2.94310 3.03311 3.16145 3.30188 3.75157 3.82501 3.91909 3.97740 4.09842 4.14292 4.33930 4.56661 4.62629 4.79662 4.88780 5.07850 5.36366 5.38191 5.53182 5.54303 5.86701 6.03463 6.07524 6.59375 6.79042 6.96126 8.42561 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.006190 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.637730 B = 4522.677627 C = 5615.377068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.013 4.013 3 Si 1.133 2.867 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.613 4.613 8 H 0.066 0.934 9 S -0.172 6.172 10 C -0.129 4.129 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.564 5.564 14 C 0.078 3.922 15 C -0.216 4.216 16 C -0.171 4.171 17 C 0.123 3.877 18 H 0.212 0.788 19 C -0.165 4.165 20 C 0.527 3.473 21 O -0.509 6.509 22 N -0.684 5.684 23 C 0.516 3.484 24 O -0.496 6.496 25 H 0.262 0.738 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.191 0.809 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.140 -19.468 1.648 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.217 4.217 3 Si 0.951 3.049 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.761 4.761 8 H 0.084 0.916 9 S 0.055 5.945 10 C -0.281 4.281 11 C 0.317 3.683 12 O -0.396 6.396 13 N -0.296 5.296 14 C -0.024 4.024 15 C -0.253 4.253 16 C -0.209 4.209 17 C 0.016 3.984 18 H 0.229 0.771 19 C -0.204 4.204 20 C 0.316 3.684 21 O -0.381 6.381 22 N -0.350 5.350 23 C 0.303 3.697 24 O -0.366 6.366 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.123 0.877 28 H 0.204 0.796 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.136 0.864 34 H 0.208 0.792 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 12.265 -17.946 1.521 21.790 hybrid contribution 1.236 -0.269 -0.504 1.362 sum 13.501 -18.215 1.017 22.695 Atomic orbital electron populations 1.70900 1.07793 1.30026 1.45529 1.27725 0.96317 1.06100 0.91563 0.82755 0.73987 0.69847 0.78331 1.19068 1.19297 1.19846 1.23947 0.96029 0.92873 1.63231 0.91599 1.84932 1.11680 1.00589 1.97283 1.23928 1.03314 0.95618 1.05205 1.19983 0.86461 0.85974 0.75906 1.90618 1.16580 1.84794 1.47652 1.47143 1.04257 1.06061 1.72166 1.22299 0.92942 0.82147 1.05009 1.23725 0.97734 1.04356 0.99518 1.23287 1.02516 1.02866 0.92219 1.22215 0.82168 1.02834 0.91192 0.77088 1.23373 1.05927 0.92724 0.98417 1.21324 0.76083 0.89695 0.81304 1.90848 1.44390 1.42763 1.60135 1.45025 1.57251 1.21874 1.10848 1.21552 0.74925 0.83139 0.90124 1.90834 1.51328 1.77480 1.16998 0.92736 0.88861 0.87729 0.79637 0.89223 0.86610 0.84847 0.91268 0.86439 0.79168 0.74096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.87 13.67 21.65 0.30 -57.58 16 2 C -0.01 -0.77 5.49 84.86 0.47 -0.31 16 3 Si 1.13 50.88 29.92 68.60 2.05 52.93 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.61 -36.08 9.50 67.95 0.65 -35.43 16 8 H 0.07 3.75 7.80 -2.91 -0.02 3.72 16 9 S -0.17 -9.48 19.61 -56.49 -1.11 -10.58 16 10 C -0.13 -5.22 3.85 71.23 0.27 -4.95 16 11 C 0.53 18.60 6.70 87.66 0.59 19.18 16 12 O -0.52 -21.96 11.62 -3.03 -0.04 -22.00 16 13 N -0.56 -12.60 2.85 -774.79 -2.21 -14.81 16 14 C 0.08 1.33 6.59 44.99 0.30 1.63 16 15 C -0.22 -5.06 9.63 30.62 0.29 -4.76 16 16 C -0.17 -3.20 9.88 30.62 0.30 -2.89 16 17 C 0.12 1.75 3.60 44.86 0.16 1.91 16 18 H 0.21 0.43 7.90 -2.39 -0.02 0.41 16 19 C -0.16 -2.27 5.97 30.58 0.18 -2.09 16 20 C 0.53 12.35 6.36 88.11 0.56 12.91 16 21 O -0.51 -16.27 18.02 -2.86 -0.05 -16.32 16 22 N -0.68 -15.80 4.29 -427.41 -1.83 -17.63 16 23 C 0.52 11.63 5.59 88.00 0.49 12.12 16 24 O -0.50 -14.65 18.02 -2.86 -0.05 -14.70 16 25 H 0.26 17.26 7.13 -92.71 -0.66 16.60 16 26 H 0.09 3.71 5.01 -2.39 -0.01 3.70 16 27 H 0.10 3.94 4.49 -2.39 -0.01 3.93 16 28 H 0.19 1.28 8.03 -2.39 -0.02 1.26 16 29 H 0.09 3.08 5.23 -4.90 -0.03 3.05 16 30 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.76 7.59 -2.39 -0.02 1.74 16 33 H 0.12 2.09 6.50 -2.38 -0.02 2.08 16 34 H 0.19 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.42 9.70 8.96 -92.70 -0.83 8.87 16 Total: -1.00 -87.79 305.52 1.75 -86.04 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.43 Total: 17.31 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 4.26 Total: -2.67 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.74 Total: -90.02 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.14 Total: -53.02 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.05 Total: 52.93 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.11 Total: -10.58 kcal Total: -87.79 1.75 -86.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263745449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.238 kcal (2) G-P(sol) polarization free energy of solvation -87.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.02 seconds