Wall clock time and date at job start Tue Mar 31 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38621 * 119.82279 * 2 1 4 4 C 1.37978 * 120.43218 * 180.02562 * 3 2 1 5 5 C 1.38934 * 120.07072 * 0.02562 * 4 3 2 6 6 N 1.38884 * 120.17523 * 179.97438 * 5 4 3 7 7 S 1.65601 * 120.00219 * 35.69560 * 6 5 4 8 8 C 1.81402 * 104.45101 * 59.46768 * 7 6 5 9 9 O 1.42098 * 104.27995 * 175.53856 * 7 6 5 10 10 O 1.42102 * 104.27491 * 303.39826 * 7 6 5 11 11 C 1.40414 * 119.64295 * 359.97438 * 5 4 3 12 12 C 1.47329 * 120.21085 * 180.02562 * 11 5 4 13 13 O 1.21641 * 120.00048 * 359.72009 * 12 11 5 14 14 N 1.34772 * 120.00023 * 180.02562 * 12 11 5 15 15 C 1.36903 * 120.00164 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00091 * 0.02562 * 15 14 12 17 17 C 1.39020 * 120.00353 * 180.02562 * 15 14 12 18 18 N 1.31381 * 119.99738 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46963 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47165 * 119.99502 * 19 17 15 22 22 H 1.48489 * 109.47174 * 240.00068 * 19 17 15 23 23 C 1.37734 * 119.81604 * 180.29797 * 2 1 3 24 24 H 1.08992 * 109.47063 * 90.00142 * 1 2 3 25 25 H 1.08995 * 109.47020 * 210.00183 * 1 2 3 26 26 H 1.09000 * 109.46847 * 330.00076 * 1 2 3 27 27 H 1.08001 * 119.78265 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.96271 * 180.02562 * 4 3 2 29 29 H 0.96998 * 119.99810 * 215.69068 * 6 5 4 30 30 H 1.08995 * 109.47298 * 59.99719 * 8 7 6 31 31 H 1.09000 * 109.47297 * 180.02562 * 8 7 6 32 32 H 1.08999 * 109.46903 * 300.00004 * 8 7 6 33 33 H 0.97003 * 119.99732 * 359.97438 * 14 12 11 34 34 H 0.97002 * 120.00513 * 180.02562 * 18 17 15 35 35 H 1.08000 * 120.04624 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2026 0.0000 4 6 3.5761 1.2173 -0.0005 5 6 4.2850 0.0224 -0.0016 6 7 5.6738 0.0347 -0.0027 7 16 6.4922 1.2062 0.8340 8 6 5.9489 0.9986 2.5522 9 8 7.8596 0.8448 0.6963 10 8 5.9998 2.4273 0.2994 11 6 3.5898 -1.1975 -0.0016 12 6 4.3290 -2.4720 -0.0022 13 8 5.5454 -2.4696 -0.0078 14 7 3.6574 -3.6405 -0.0027 15 6 4.3442 -4.8248 -0.0038 16 1 5.4242 -4.8227 -0.0038 17 6 3.6515 -6.0301 -0.0048 18 7 2.3377 -6.0326 -0.0043 19 14 4.5886 -7.6460 -0.0055 20 1 6.0481 -7.3718 -0.0054 21 1 4.2310 -8.4262 1.2064 22 1 4.2319 -8.4245 -1.2186 23 6 2.1919 -1.1950 -0.0062 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6500 2.1342 0.0004 28 1 4.1056 2.1587 -0.0001 29 1 6.1644 -0.6431 -0.4935 30 1 6.2071 -0.0028 2.8965 31 1 6.4435 1.7384 3.1816 32 1 4.8692 1.1358 2.6109 33 1 2.6874 -3.6423 -0.0023 34 1 1.8543 -6.8736 -0.0047 35 1 1.6496 -2.1290 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299636171.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:10 Heat of formation + Delta-G solvation = -81.284303 kcal Electronic energy + Delta-G solvation = -22157.626109 eV Core-core repulsion = 18668.838637 eV Total energy + Delta-G solvation = -3488.787472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82246 -37.67510 -37.01216 -35.94439 -35.39934 -33.98379 -31.79370 -30.86559 -30.51857 -29.44989 -25.90135 -25.36949 -23.25417 -21.56608 -19.56389 -19.34530 -18.22573 -17.46478 -17.29523 -16.39089 -16.17703 -15.35671 -15.07248 -14.73860 -14.24415 -13.98624 -13.84616 -13.66578 -13.29928 -13.27824 -13.17513 -12.81334 -12.46032 -12.26684 -12.07328 -11.95855 -11.76386 -11.72176 -11.46413 -11.24668 -11.06400 -10.78826 -10.47651 -10.40868 -10.24731 -9.75146 -8.68527 -8.55706 -8.20937 -7.83268 -6.67015 -3.99835 0.26352 1.29315 1.57580 2.72975 3.05544 3.16208 3.23226 3.53980 3.79373 4.00225 4.23433 4.33153 4.72910 4.75723 4.98184 5.04723 5.14441 5.16404 5.21855 5.38398 5.54810 5.68962 5.73409 5.88595 5.93616 6.02543 6.19238 6.33937 6.46729 6.74554 6.82550 7.13233 7.32863 7.44713 7.86088 8.38147 8.94640 9.29544 9.83820 10.49465 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.005345 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.093661 B = 5237.184527 C = 6824.192129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.090 4.090 4 C -0.185 4.185 5 C 0.188 3.812 6 N -1.032 6.032 7 S 2.608 3.392 8 C -0.669 4.669 9 O -0.955 6.955 10 O -0.960 6.960 11 C -0.116 4.116 12 C 0.465 3.535 13 O -0.598 6.598 14 N -0.537 5.537 15 C -0.295 4.295 16 H 0.110 0.890 17 C 0.025 3.975 18 N -0.887 5.887 19 Si 0.935 3.065 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.081 4.081 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.160 0.840 29 H 0.441 0.559 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.395 0.605 34 H 0.276 0.724 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 12.308 3.392 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.109 4.109 4 C -0.206 4.206 5 C 0.088 3.912 6 N -0.788 5.788 7 S 2.702 3.298 8 C -0.819 4.819 9 O -0.945 6.945 10 O -0.950 6.950 11 C -0.124 4.124 12 C 0.254 3.746 13 O -0.487 6.487 14 N -0.170 5.170 15 C -0.425 4.425 16 H 0.128 0.872 17 C -0.179 4.179 18 N -0.526 5.526 19 Si 0.761 3.239 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.101 4.101 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.178 0.822 29 H 0.287 0.713 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.230 0.770 34 H 0.086 0.914 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.878 12.806 3.110 13.311 hybrid contribution -0.513 -1.615 0.321 1.725 sum -2.392 11.190 3.431 11.946 Atomic orbital electron populations 1.20748 0.91155 1.02595 1.02209 1.19794 0.96112 0.92890 1.02331 1.20864 0.93245 0.97382 0.99420 1.21856 0.95385 0.97768 1.05596 1.17308 0.82339 0.92763 0.98793 1.53274 1.12354 1.49809 1.63330 1.04990 0.73750 0.73714 0.77358 1.30449 1.13439 1.12293 1.25752 1.93615 1.32052 1.83021 1.85809 1.93527 1.80748 1.44618 1.76104 1.20251 0.93487 0.93740 1.04918 1.17517 0.87382 0.83051 0.86599 1.90438 1.13206 1.86427 1.58603 1.41901 1.09572 1.04731 1.60806 1.19920 0.93835 0.82053 1.46678 0.87179 1.25409 0.95718 1.00209 0.96592 1.69597 1.06238 1.28763 1.48004 0.85710 0.79826 0.80408 0.77946 1.18920 1.20480 1.20458 1.21209 0.92673 0.98163 0.98095 0.91370 0.91438 0.91827 0.85693 0.82245 0.71281 0.84710 0.85415 0.85184 0.77036 0.91358 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.00 36.01 0.36 -0.79 16 2 C -0.11 -1.49 5.87 -104.66 -0.61 -2.10 16 3 C -0.09 -1.15 9.68 -39.54 -0.38 -1.54 16 4 C -0.18 -2.69 9.24 -39.42 -0.36 -3.05 16 5 C 0.19 3.20 6.11 -83.59 -0.51 2.69 16 6 N -1.03 -17.40 4.96 32.56 0.16 -17.24 16 7 S 2.61 37.04 5.86 -107.50 -0.63 36.41 16 8 C -0.67 -7.17 10.69 101.05 1.08 -6.09 16 9 O -0.95 -16.68 18.08 -57.54 -1.04 -17.72 16 10 O -0.96 -14.66 15.08 -57.54 -0.87 -15.53 16 11 C -0.12 -2.19 5.89 -104.80 -0.62 -2.81 16 12 C 0.47 10.75 7.71 -12.56 -0.10 10.66 16 13 O -0.60 -15.06 13.49 5.24 0.07 -14.99 16 14 N -0.54 -13.06 5.23 -11.98 -0.06 -13.12 16 15 C -0.30 -7.79 9.68 -15.00 -0.15 -7.94 16 16 H 0.11 3.03 7.15 -52.49 -0.38 2.66 16 17 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 18 N -0.89 -22.65 13.05 55.50 0.72 -21.92 16 19 Si 0.93 19.89 29.55 -169.99 -5.02 14.87 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 C -0.08 -1.32 9.18 -39.18 -0.36 -1.68 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.16 2.22 5.20 -52.49 -0.27 1.95 16 29 H 0.44 8.25 6.54 -34.47 -0.23 8.03 16 30 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.13 1.01 8.14 -51.92 -0.42 0.58 16 32 H 0.13 1.28 8.14 -51.92 -0.42 0.85 16 33 H 0.39 9.10 5.92 -40.82 -0.24 8.86 16 34 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.13 2.09 6.40 -52.49 -0.34 1.76 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -32.11 312.47 -7.24 -39.35 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -3.54 Total: 17.31 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.75 Total: -12.13 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.82 Total: -52.28 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.84 Total: -48.24 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 37.04 SS G_CDS: -0.63 Total: 36.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.11 -7.24 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299636171.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.933 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds