Wall clock time and date at job start Tue Mar 31 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30836 * 125.90650 * 2 1 4 4 N 1.40083 * 108.20992 * 180.25656 * 3 2 1 5 5 C 1.46496 * 126.03761 * 179.69371 * 4 3 2 6 6 C 1.34946 * 107.92303 * 359.71882 * 4 3 2 7 7 C 1.50705 * 126.12746 * 179.97438 * 6 4 3 8 8 C 1.35314 * 107.74958 * 359.97438 * 6 4 3 9 9 S 1.76204 * 126.04427 * 179.97438 * 8 6 4 10 10 O 1.42104 * 106.40027 * 336.46124 * 9 8 6 11 11 O 1.42096 * 106.40438 * 203.54221 * 9 8 6 12 12 N 1.65598 * 107.21598 * 89.99913 * 9 8 6 13 13 C 1.36945 * 120.00097 * 270.00193 * 12 9 8 14 14 H 1.08002 * 119.99480 * 326.08715 * 13 12 9 15 15 C 1.38811 * 119.99884 * 146.08387 * 13 12 9 16 16 N 1.31620 * 120.00307 * 335.71063 * 15 13 12 17 17 Si 1.86803 * 119.99662 * 155.70552 * 15 13 12 18 18 H 1.48497 * 109.46854 * 84.99661 * 17 15 13 19 19 H 1.48497 * 109.47057 * 204.99738 * 17 15 13 20 20 H 1.48493 * 109.47136 * 324.99702 * 17 15 13 21 21 C 1.46498 * 119.99976 * 90.00036 * 12 9 8 22 22 C 1.47205 * 109.46832 * 97.16424 * 21 12 9 23 23 N 6.28643 * 66.59502 * 156.95917 * 2 1 3 24 24 H 1.09001 * 109.47412 * 270.21325 * 1 2 3 25 25 H 1.09005 * 109.46957 * 30.21111 * 1 2 3 26 26 H 1.08999 * 109.47267 * 150.20884 * 1 2 3 27 27 H 1.08995 * 109.47564 * 270.02880 * 5 4 3 28 28 H 1.09007 * 109.47110 * 30.03108 * 5 4 3 29 29 H 1.09003 * 109.46676 * 150.02516 * 5 4 3 30 30 H 1.08998 * 109.47599 * 270.03015 * 7 6 4 31 31 H 1.09004 * 109.46616 * 30.03134 * 7 6 4 32 32 H 1.09000 * 109.47028 * 150.02242 * 7 6 4 33 33 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47486 * 217.15910 * 21 12 9 35 35 H 1.08999 * 109.47196 * 337.16877 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6339 -0.0060 5 6 4.7899 1.5005 -0.0143 6 6 3.6141 -0.7155 -0.0032 7 6 4.8349 -1.5992 -0.0082 8 6 2.3271 -1.1331 0.0048 9 16 1.7806 -2.8083 0.0106 10 8 2.8412 -3.5782 -0.5386 11 8 0.4650 -2.8031 -0.5263 12 7 1.6376 -3.2717 1.5940 13 6 2.7060 -3.8311 2.2429 14 1 3.3988 -4.4580 1.7012 15 6 2.8985 -3.5922 3.5967 16 7 2.3968 -2.5093 4.1518 17 14 3.8694 -4.8078 4.6308 18 1 5.3192 -4.5072 4.5169 19 1 3.4505 -4.6949 6.0509 20 1 3.6103 -6.1874 4.1464 21 6 0.3683 -3.0832 2.3007 22 6 -0.3978 -4.3400 2.2770 23 7 -0.9902 -5.3090 2.2580 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3634 -0.8918 -0.5106 27 1 5.0772 1.7133 -1.0439 28 1 4.5593 2.4341 0.4990 29 1 5.6121 0.9989 0.4961 30 1 5.1239 -1.8140 -1.0370 31 1 5.6537 -1.0904 0.5006 32 1 4.6101 -2.5323 0.5085 33 1 2.5310 -2.3426 5.0979 34 1 0.5664 -2.7979 3.3338 35 1 -0.2072 -2.2977 1.8107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330788528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:49 Heat of formation + Delta-G solvation = 34.491899 kcal Electronic energy + Delta-G solvation = -23148.390441 eV Core-core repulsion = 19696.916153 eV Total energy + Delta-G solvation = -3451.474288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83190 -36.66296 -36.08884 -34.83197 -34.58927 -33.79348 -31.74563 -31.67629 -29.22036 -27.47028 -26.73232 -25.16784 -24.13067 -20.65197 -19.20621 -18.54208 -18.00880 -17.16116 -16.29115 -16.01040 -15.43657 -15.06381 -14.94005 -14.42023 -13.74319 -13.44655 -13.25982 -13.16349 -13.06680 -12.76923 -12.43095 -12.36097 -12.19296 -12.11115 -11.69094 -11.59567 -11.51471 -11.50136 -11.08942 -10.95267 -10.76450 -10.73500 -10.57989 -10.52595 -10.27402 -9.74769 -9.43288 -8.68972 -8.45795 -8.12829 -6.69193 -4.29462 1.63917 2.15129 2.79624 2.87892 3.03005 3.13262 3.22403 3.53703 3.66350 3.96950 4.50217 4.61336 4.72039 4.89290 4.91204 5.16933 5.20670 5.24455 5.35460 5.45523 5.49363 5.79003 5.89777 5.93090 6.08620 6.25481 6.29713 6.43581 6.61744 6.67085 6.95961 7.05592 7.28599 7.34487 8.01900 8.14056 8.41030 8.58779 9.01667 10.30249 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.008121 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.466642 B = 3447.110706 C = 4347.018324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.156 3.844 3 N -0.313 5.313 4 N -0.377 5.377 5 C 0.099 3.901 6 C 0.205 3.795 7 C -0.110 4.110 8 C -0.793 4.793 9 S 2.610 3.390 10 O -0.979 6.979 11 O -0.997 6.997 12 N -0.813 5.813 13 C -0.273 4.273 14 H 0.112 0.888 15 C 0.043 3.957 16 N -0.834 5.834 17 Si 0.916 3.084 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.208 3.792 22 C 0.222 3.778 23 N -0.466 5.466 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.276 0.724 34 H 0.147 0.853 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 7.300 -2.088 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.012 4.012 3 N -0.134 5.134 4 N -0.156 5.156 5 C -0.043 4.043 6 C 0.073 3.927 7 C -0.168 4.168 8 C -0.886 4.886 9 S 2.708 3.292 10 O -0.969 6.969 11 O -0.987 6.987 12 N -0.638 5.638 13 C -0.415 4.415 14 H 0.130 0.870 15 C -0.169 4.169 16 N -0.472 5.472 17 Si 0.741 3.259 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.188 1.188 21 C 0.077 3.923 22 C -0.098 4.098 23 N -0.146 5.146 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.129 0.871 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.746 7.016 -2.904 8.467 hybrid contribution 1.141 0.089 0.914 1.465 sum 4.887 7.106 -1.990 8.851 Atomic orbital electron populations 1.20704 0.86351 1.05208 1.03907 1.21757 0.96380 0.88939 0.94157 1.77184 0.86013 1.22580 1.27631 1.48732 1.05680 1.04378 1.56818 1.21817 0.84441 0.95070 1.02956 1.20838 0.96118 0.84036 0.91694 1.20851 0.92098 0.99789 1.04076 1.32059 0.99029 1.26623 1.30896 1.07249 0.72712 0.73145 0.76046 1.93373 1.56747 1.68622 1.78135 1.93327 1.38735 1.87342 1.79302 1.53252 1.13428 1.66334 1.30746 1.19627 1.06259 1.22861 0.92794 0.87044 1.25632 0.96924 0.95606 0.98765 1.69897 1.41737 1.21788 1.13779 0.86099 0.79705 0.81380 0.78739 1.19657 1.20432 1.18842 1.18869 0.82120 0.86330 1.04931 1.30288 0.92487 0.95428 0.91555 1.80977 1.11393 1.11605 1.10639 0.89931 0.91082 0.87063 0.91031 0.89449 0.89477 0.89517 0.91226 0.86651 0.91315 0.83604 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.14 36.00 0.37 -1.32 16 2 C 0.16 3.06 7.21 -82.41 -0.59 2.47 16 3 N -0.31 -6.03 12.57 33.67 0.42 -5.61 16 4 N -0.38 -6.51 4.01 -63.88 -0.26 -6.77 16 5 C 0.10 1.13 11.27 59.84 0.67 1.81 16 6 C 0.20 3.83 6.92 -82.26 -0.57 3.26 16 7 C -0.11 -1.74 9.15 36.01 0.33 -1.41 16 8 C -0.79 -16.28 6.17 -40.01 -0.25 -16.53 16 9 S 2.61 57.22 5.55 -107.50 -0.60 56.62 16 10 O -0.98 -22.88 14.68 -57.17 -0.84 -23.72 16 11 O -1.00 -22.54 14.28 -57.17 -0.82 -23.36 16 12 N -0.81 -17.85 2.82 -62.77 -0.18 -18.03 16 13 C -0.27 -6.18 9.01 -15.06 -0.14 -6.31 16 14 H 0.11 2.53 7.42 -52.49 -0.39 2.14 16 15 C 0.04 0.94 4.98 -17.43 -0.09 0.85 16 16 N -0.83 -18.46 11.32 55.49 0.63 -17.83 16 17 Si 0.92 17.71 29.62 -169.99 -5.03 12.68 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 C 0.21 4.18 5.48 -6.83 -0.04 4.14 16 22 C 0.22 4.73 15.70 -20.76 -0.33 4.40 16 23 N -0.47 -10.52 18.54 42.15 0.78 -9.74 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.11 1.92 5.66 -51.93 -0.29 1.62 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.09 0.81 7.05 -51.93 -0.37 0.44 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 32 H 0.12 2.08 6.71 -51.93 -0.35 1.73 16 33 H 0.28 5.79 8.31 -40.82 -0.34 5.45 16 34 H 0.15 2.96 5.37 -51.93 -0.28 2.68 16 35 H 0.10 1.75 7.53 -51.93 -0.39 1.36 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -29.96 316.59 -5.43 -35.39 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.68 Total: 4.26 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.63 Total: -8.66 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 1.40 Total: -57.97 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.66 Total: -47.08 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 57.22 SS G_CDS: -0.60 Total: 56.62 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.96 -5.43 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330788528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.877 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds