Wall clock time and date at job start Tue Mar 31 2020 03:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30836 * 125.90650 * 2 1 4 4 N 1.40083 * 108.20992 * 180.25656 * 3 2 1 5 5 C 1.46496 * 126.03761 * 179.69371 * 4 3 2 6 6 C 1.34946 * 107.92303 * 359.71882 * 4 3 2 7 7 C 1.50705 * 126.12746 * 179.97438 * 6 4 3 8 8 C 1.35314 * 107.74958 * 359.97438 * 6 4 3 9 9 S 1.76204 * 126.04427 * 179.97438 * 8 6 4 10 10 O 1.42104 * 106.40027 * 336.46124 * 9 8 6 11 11 O 1.42096 * 106.40438 * 203.54221 * 9 8 6 12 12 N 1.65598 * 107.21598 * 89.99913 * 9 8 6 13 13 C 1.36945 * 120.00097 * 270.00193 * 12 9 8 14 14 H 1.08002 * 119.99480 * 326.08715 * 13 12 9 15 15 C 1.38811 * 119.99884 * 146.08387 * 13 12 9 16 16 N 1.31620 * 120.00307 * 335.71063 * 15 13 12 17 17 Si 1.86803 * 119.99662 * 155.70552 * 15 13 12 18 18 H 1.48497 * 109.46854 * 84.99661 * 17 15 13 19 19 H 1.48497 * 109.47057 * 204.99738 * 17 15 13 20 20 H 1.48493 * 109.47136 * 324.99702 * 17 15 13 21 21 C 1.46498 * 119.99976 * 90.00036 * 12 9 8 22 22 C 1.47205 * 109.46832 * 97.16424 * 21 12 9 23 23 N 6.28643 * 66.59502 * 156.95917 * 2 1 3 24 24 H 1.09001 * 109.47412 * 270.21325 * 1 2 3 25 25 H 1.09005 * 109.46957 * 30.21111 * 1 2 3 26 26 H 1.08999 * 109.47267 * 150.20884 * 1 2 3 27 27 H 1.08995 * 109.47564 * 270.02880 * 5 4 3 28 28 H 1.09007 * 109.47110 * 30.03108 * 5 4 3 29 29 H 1.09003 * 109.46676 * 150.02516 * 5 4 3 30 30 H 1.08998 * 109.47599 * 270.03015 * 7 6 4 31 31 H 1.09004 * 109.46616 * 30.03134 * 7 6 4 32 32 H 1.09000 * 109.47028 * 150.02242 * 7 6 4 33 33 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 34 34 H 1.08995 * 109.47486 * 217.15910 * 21 12 9 35 35 H 1.08999 * 109.47196 * 337.16877 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0597 0.0000 4 7 3.6088 0.6339 -0.0060 5 6 4.7899 1.5005 -0.0143 6 6 3.6141 -0.7155 -0.0032 7 6 4.8349 -1.5992 -0.0082 8 6 2.3271 -1.1331 0.0048 9 16 1.7806 -2.8083 0.0106 10 8 2.8412 -3.5782 -0.5386 11 8 0.4650 -2.8031 -0.5263 12 7 1.6376 -3.2717 1.5940 13 6 2.7060 -3.8311 2.2429 14 1 3.3988 -4.4580 1.7012 15 6 2.8985 -3.5922 3.5967 16 7 2.3968 -2.5093 4.1518 17 14 3.8694 -4.8078 4.6308 18 1 5.3192 -4.5072 4.5169 19 1 3.4505 -4.6949 6.0509 20 1 3.6103 -6.1874 4.1464 21 6 0.3683 -3.0832 2.3007 22 6 -0.3978 -4.3400 2.2770 23 7 -0.9902 -5.3090 2.2580 24 1 -0.3634 0.0038 1.0276 25 1 -0.3633 0.8881 -0.5171 26 1 -0.3634 -0.8918 -0.5106 27 1 5.0772 1.7133 -1.0439 28 1 4.5593 2.4341 0.4990 29 1 5.6121 0.9989 0.4961 30 1 5.1239 -1.8140 -1.0370 31 1 5.6537 -1.0904 0.5006 32 1 4.6101 -2.5323 0.5085 33 1 2.5310 -2.3426 5.0979 34 1 0.5664 -2.7979 3.3338 35 1 -0.2072 -2.2977 1.8107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330788528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:48 Heat of formation + Delta-G solvation = 14.482305 kcal Electronic energy + Delta-G solvation = -23149.258122 eV Core-core repulsion = 19696.916153 eV Total energy + Delta-G solvation = -3452.341969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.089 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20775 -38.35257 -37.83847 -36.55573 -36.36859 -35.07672 -33.42791 -32.99651 -30.41447 -29.12710 -28.08800 -26.35528 -25.82039 -22.08905 -20.57275 -20.18849 -19.71251 -18.74319 -17.87023 -17.59910 -16.80225 -16.58164 -16.44805 -16.05126 -15.34729 -14.86787 -14.78084 -14.41590 -14.29059 -14.12799 -13.97797 -13.85385 -13.59179 -13.32949 -13.23097 -13.16138 -12.97005 -12.83219 -12.78968 -12.62567 -12.42087 -12.33222 -12.15574 -12.08160 -11.92490 -11.29764 -11.08277 -10.03371 -9.93641 -9.76099 -8.35278 -6.01741 -0.02178 0.74847 1.37986 1.49182 1.57698 1.60096 1.67746 1.84603 1.95365 2.37117 2.85372 2.94303 3.21681 3.47263 3.54546 3.61094 3.92354 4.09850 4.27846 4.34920 4.37605 4.52410 4.60933 4.71562 4.82431 4.87827 4.99526 5.05832 5.16943 5.27979 5.31695 5.62315 5.67472 6.07583 6.44310 6.61114 6.70293 6.89389 7.32580 8.65121 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.014471 B = 0.008121 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.466642 B = 3447.110706 C = 4347.018324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.144 3.856 3 N -0.329 5.329 4 N -0.372 5.372 5 C 0.084 3.916 6 C 0.200 3.800 7 C -0.112 4.112 8 C -0.823 4.823 9 S 2.625 3.375 10 O -0.999 6.999 11 O -1.010 7.010 12 N -0.822 5.822 13 C -0.296 4.296 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.849 5.849 17 Si 0.961 3.039 18 H -0.262 1.262 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.207 3.793 22 C 0.231 3.769 23 N -0.491 5.491 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.281 0.719 34 H 0.149 0.851 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.865 8.646 -1.850 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.025 4.025 3 N -0.150 5.150 4 N -0.151 5.151 5 C -0.055 4.055 6 C 0.066 3.934 7 C -0.170 4.170 8 C -0.920 4.920 9 S 2.726 3.274 10 O -0.989 6.989 11 O -1.000 7.000 12 N -0.647 5.647 13 C -0.437 4.437 14 H 0.120 0.880 15 C -0.188 4.188 16 N -0.487 5.487 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.077 3.923 22 C -0.088 4.088 23 N -0.171 5.171 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.955 8.359 -2.646 10.071 hybrid contribution 0.822 -0.214 0.756 1.137 sum 5.777 8.145 -1.890 10.163 Atomic orbital electron populations 1.20797 0.84877 1.05656 1.05075 1.22175 0.97652 0.88626 0.94038 1.77114 0.87108 1.22752 1.28054 1.49122 1.06314 1.04509 1.55121 1.22330 0.83091 0.95016 1.05111 1.21218 0.96377 0.85101 0.90700 1.20942 0.92179 0.98622 1.05213 1.31792 1.00574 1.25762 1.33822 1.06194 0.72144 0.73439 0.75600 1.93342 1.57329 1.69718 1.78557 1.93312 1.39285 1.87837 1.79518 1.53163 1.13826 1.67208 1.30536 1.19621 1.06745 1.23942 0.93414 0.88045 1.26048 0.97465 0.96366 0.98915 1.69916 1.42317 1.22282 1.14159 0.85424 0.79342 0.79176 0.77595 1.18653 1.20089 1.20116 1.19070 0.81754 0.86293 1.05217 1.30589 0.91973 0.95406 0.90788 1.80971 1.12294 1.12312 1.11537 0.88368 0.89003 0.88192 0.88696 0.88361 0.86924 0.88005 0.87601 0.89045 0.90890 0.83465 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.34 10.14 71.23 0.72 -2.61 16 2 C 0.14 5.46 7.21 43.10 0.31 5.77 16 3 N -0.33 -12.10 12.57 -47.38 -0.60 -12.70 16 4 N -0.37 -11.97 4.01 -356.03 -1.43 -13.40 16 5 C 0.08 1.63 11.27 127.77 1.44 3.07 16 6 C 0.20 7.16 6.92 41.41 0.29 7.44 16 7 C -0.11 -3.33 9.15 71.24 0.65 -2.68 16 8 C -0.82 -33.22 6.17 21.99 0.14 -33.08 16 9 S 2.63 115.24 5.55 -56.49 -0.31 114.93 16 10 O -1.00 -47.15 14.68 -128.00 -1.88 -49.03 16 11 O -1.01 -45.68 14.28 -128.00 -1.83 -47.50 16 12 N -0.82 -36.11 2.82 -352.51 -0.99 -37.11 16 13 C -0.30 -13.44 9.01 84.03 0.76 -12.69 16 14 H 0.10 4.71 7.42 -2.91 -0.02 4.69 16 15 C 0.02 0.97 4.98 84.86 0.42 1.40 16 16 N -0.85 -36.87 11.32 21.65 0.25 -36.62 16 17 Si 0.96 35.67 29.62 68.60 2.03 37.70 16 18 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.28 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 21 C 0.21 8.23 5.48 84.58 0.46 8.70 16 22 C 0.23 9.84 15.70 89.44 1.40 11.24 16 23 N -0.49 -22.13 18.54 20.01 0.37 -21.76 16 24 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 25 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.10 3.38 5.66 -2.39 -0.01 3.37 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.11 1.61 7.05 -2.39 -0.02 1.60 16 30 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.11 2.30 7.08 -2.38 -0.02 2.28 16 32 H 0.09 3.24 6.71 -2.39 -0.02 3.22 16 33 H 0.28 11.46 8.31 -92.71 -0.77 10.69 16 34 H 0.15 5.91 5.37 -2.39 -0.01 5.90 16 35 H 0.12 4.26 7.53 -2.39 -0.02 4.24 16 Total: -1.00 -63.26 316.59 3.34 -59.92 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.14 Total: 19.02 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 6.59 Total: -13.44 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -2.40 Total: -121.59 kcal Atomic # 8 Polarization: -92.82 SS G_CDS: -3.71 Total: -96.53 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: 115.24 SS G_CDS: -0.31 Total: 114.93 kcal Total: -63.26 3.34 -59.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330788528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.399 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds