Wall clock time and date at job start Tue Mar 31 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46500 * 109.47559 * 2 1 4 4 C 1.46498 * 119.99704 * 274.99934 * 3 2 1 5 5 C 1.50705 * 109.47132 * 274.99780 * 4 3 2 6 6 H 1.07998 * 120.00108 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99919 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00073 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47362 * 90.00192 * 9 7 5 11 11 H 1.48500 * 109.47065 * 210.00256 * 9 7 5 12 12 H 1.48500 * 109.47327 * 330.00286 * 9 7 5 13 13 S 1.65590 * 120.00174 * 94.99419 * 3 2 1 14 14 O 1.42102 * 106.40564 * 336.46617 * 13 3 2 15 15 O 1.42099 * 106.40264 * 203.54195 * 13 3 2 16 16 N 1.65600 * 107.21954 * 90.00508 * 13 3 2 17 17 C 1.47290 * 125.79191 * 270.00102 * 16 13 3 18 18 C 1.54325 * 107.30599 * 178.92104 * 17 16 13 19 19 C 1.55154 * 102.94303 * 337.81911 * 18 17 16 20 20 F 1.39908 * 111.00307 * 277.42902 * 19 18 17 21 21 F 1.39901 * 111.00710 * 153.57639 * 19 18 17 22 22 C 1.47425 * 125.65067 * 89.99700 * 16 13 3 23 23 H 1.08997 * 109.47561 * 300.00653 * 1 2 3 24 24 H 1.09005 * 109.46934 * 60.00359 * 1 2 3 25 25 H 1.09007 * 109.47358 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47314 * 239.99182 * 2 1 3 27 27 H 1.09005 * 109.46934 * 119.99641 * 2 1 3 28 28 H 1.09008 * 109.47397 * 34.99763 * 4 3 2 29 29 H 1.09001 * 109.47185 * 154.99700 * 4 3 2 30 30 H 0.96998 * 120.00284 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.85762 * 59.49720 * 17 16 13 32 32 H 1.08995 * 110.00297 * 298.42667 * 17 16 13 33 33 H 1.09002 * 110.72180 * 219.45147 * 18 17 16 34 34 H 1.08997 * 110.72163 * 96.18354 * 18 17 16 35 35 H 1.09002 * 110.36696 * 85.26398 * 22 16 13 36 36 H 1.08995 * 110.36608 * 323.05234 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4949 1.7886 -1.8823 6 1 4.1724 1.1115 -1.3835 7 6 3.8531 2.3611 -3.0844 8 7 5.0196 2.0823 -3.6238 9 14 2.6814 3.5328 -3.9468 10 1 2.9451 4.9213 -3.4909 11 1 2.8866 3.4465 -5.4150 12 1 1.2810 3.1621 -3.6201 13 16 2.4121 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3057 3.5186 1.1997 16 7 4.0143 1.8137 1.7137 17 6 4.5519 0.6614 2.4572 18 6 6.0903 0.7826 2.4420 19 6 6.3554 1.6884 1.2105 20 9 6.3501 0.9410 0.0278 21 9 7.5578 2.3893 1.3530 22 6 5.1423 2.6502 1.2649 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5140 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.3617 1.8096 -1.9454 29 1 2.0922 3.1802 -1.0757 30 1 5.2715 2.4847 -4.4697 31 1 4.2483 -0.2664 1.9723 32 1 4.1889 0.6785 3.4848 33 1 6.5529 -0.1953 2.3082 34 1 6.4488 1.2582 3.3548 35 1 5.3266 3.4532 1.9786 36 1 4.9396 3.0615 0.2761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336895155.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:00 Heat of formation + Delta-G solvation = -167.741795 kcal Electronic energy + Delta-G solvation = -24441.235494 eV Core-core repulsion = 20530.302509 eV Total energy + Delta-G solvation = -3910.932985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.48305 -46.64737 -37.65460 -36.88007 -36.21999 -35.42342 -32.64332 -30.44585 -30.24327 -28.58904 -27.16725 -22.94527 -22.78896 -21.53358 -21.39944 -18.78011 -17.60842 -17.48220 -16.97634 -16.81553 -16.13694 -15.64086 -15.51298 -14.72410 -14.47066 -14.12366 -13.75363 -13.53708 -13.45279 -13.12102 -12.94501 -12.70296 -12.64366 -12.53047 -12.11027 -11.98497 -11.83545 -11.71659 -11.57120 -11.48226 -11.46474 -11.18632 -11.00862 -10.59852 -10.51685 -10.40035 -10.18366 -9.55863 -8.92322 -8.64079 -8.17555 -6.13206 -4.15062 0.99020 3.18056 3.26340 3.33312 3.36010 3.83910 3.88273 3.98828 4.27537 4.35425 4.64962 4.81658 5.14762 5.17669 5.25938 5.28079 5.50094 5.52241 5.63861 5.67201 5.75766 5.81143 5.97573 5.98092 6.14694 6.20384 6.35949 6.49271 6.58037 6.82791 7.08722 7.34832 7.53918 8.42214 8.93632 9.46239 10.98230 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.012497 B = 0.009421 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.943888 B = 2971.413759 C = 4359.874672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.983 5.983 4 C 0.213 3.787 5 C -0.547 4.547 6 H 0.088 0.912 7 C 0.079 3.921 8 N -0.886 5.886 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.801 3.199 14 O -0.986 6.986 15 O -0.972 6.972 16 N -1.012 6.012 17 C 0.124 3.876 18 C -0.163 4.163 19 C 0.276 3.724 20 F -0.166 7.166 21 F -0.193 7.193 22 C 0.093 3.907 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -3.784 11.155 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 N -0.824 5.824 4 C 0.089 3.911 5 C -0.586 4.586 6 H 0.106 0.894 7 C -0.125 4.125 8 N -0.524 5.524 9 Si 0.692 3.308 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.189 1.189 13 S 2.811 3.189 14 O -0.970 6.970 15 O -0.957 6.957 16 N -0.850 5.850 17 C -0.001 4.001 18 C -0.202 4.202 19 C 0.238 3.762 20 F -0.147 7.147 21 F -0.174 7.174 22 C -0.034 4.034 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.205 -3.222 11.500 12.004 hybrid contribution 0.000 0.349 -1.111 1.165 sum -1.204 -2.873 10.389 10.846 Atomic orbital electron populations 1.22214 0.96774 1.01655 1.02297 1.21037 0.93610 0.82468 1.02633 1.57583 1.78068 1.23232 1.23494 1.19626 0.98507 0.91966 0.80960 1.21517 1.00883 1.29552 1.06604 0.89438 1.24843 0.94843 0.95963 0.96852 1.69906 1.20312 1.43451 1.18698 0.87028 0.82249 0.82328 0.79244 1.19793 1.21071 1.18900 1.01405 0.71417 0.73336 0.72787 1.93555 1.69513 1.76475 1.57474 1.93577 1.85396 1.30674 1.86025 1.59156 1.23453 1.34273 1.68092 1.21652 0.92160 0.89233 0.97078 1.23615 0.97073 1.01889 0.97666 1.21850 0.82236 0.88114 0.84022 1.93165 1.96429 1.76644 1.48428 1.92987 1.48449 1.80046 1.95932 1.22734 0.84232 0.92317 1.04163 0.92581 0.92216 0.92046 0.89770 0.91677 0.94444 0.94104 0.92554 0.90807 0.90174 0.87944 0.87827 0.89088 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 37.15 0.38 -2.11 16 2 C 0.13 2.12 6.06 -4.05 -0.02 2.10 16 3 N -0.98 -19.23 2.82 -115.66 -0.33 -19.56 16 4 C 0.21 4.84 4.50 -5.19 -0.02 4.82 16 5 C -0.55 -14.18 9.90 -34.44 -0.34 -14.52 16 6 H 0.09 2.42 7.77 -52.49 -0.41 2.02 16 7 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.89 -25.72 13.96 55.43 0.77 -24.95 16 9 Si 0.86 20.58 27.47 -169.99 -4.67 15.91 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 13 S 2.80 53.18 6.31 -107.50 -0.68 52.50 16 14 O -0.99 -18.74 16.70 -57.17 -0.95 -19.69 16 15 O -0.97 -21.18 16.28 -57.17 -0.93 -22.11 16 16 N -1.01 -16.71 3.77 -111.22 -0.42 -17.13 16 17 C 0.12 1.59 7.01 -2.92 -0.02 1.57 16 18 C -0.16 -1.87 6.57 -24.90 -0.16 -2.03 16 19 C 0.28 4.39 2.64 -24.58 -0.06 4.32 16 20 F -0.17 -3.33 16.95 2.25 0.04 -3.29 16 21 F -0.19 -3.08 17.24 2.25 0.04 -3.04 16 22 C 0.09 1.55 6.60 -2.53 -0.02 1.53 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 27 H 0.06 0.95 7.61 -51.93 -0.40 0.55 16 28 H 0.04 0.84 7.17 -51.92 -0.37 0.47 16 29 H 0.04 0.97 6.34 -51.93 -0.33 0.64 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.12 2.32 8.11 -51.93 -0.42 1.90 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -31.74 319.79 -7.58 -39.32 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.90 Total: -0.52 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.37 Total: -2.26 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: 0.03 Total: -61.64 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.89 Total: -41.80 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.08 Total: -6.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Atomic # 16 Polarization: 53.18 SS G_CDS: -0.68 Total: 52.50 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.74 -7.58 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336895155.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.424 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds