Wall clock time and date at job start Tue Mar 31 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46997 * 2 1 4 4 C 1.50707 * 109.46693 * 119.99949 * 2 1 3 5 5 H 1.07992 * 119.99628 * 120.00503 * 4 2 1 6 6 C 1.37878 * 119.99838 * 299.99643 * 4 2 1 7 7 N 1.31511 * 119.99780 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00212 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47133 * 89.99765 * 8 6 4 10 10 H 1.48500 * 109.46756 * 209.99604 * 8 6 4 11 11 H 1.48503 * 109.47123 * 329.99490 * 8 6 4 12 12 N 1.46496 * 109.47376 * 239.99716 * 2 1 3 13 13 C 1.46496 * 120.00095 * 300.00548 * 12 2 1 14 14 S 1.65597 * 119.99924 * 119.99827 * 12 2 1 15 15 O 1.42109 * 106.40370 * 336.46298 * 14 12 2 16 16 O 1.42100 * 106.40599 * 203.54304 * 14 12 2 17 17 N 1.65604 * 107.21817 * 90.00300 * 14 12 2 18 18 C 1.47425 * 125.64416 * 269.94865 * 17 14 12 19 19 C 1.54918 * 104.82827 * 204.16824 * 18 17 14 20 20 C 1.55157 * 101.58155 * 322.99497 * 19 18 17 21 21 F 1.39906 * 110.71759 * 153.86224 * 20 19 18 22 22 F 1.39894 * 110.71872 * 277.13513 * 20 19 18 23 23 C 1.47015 * 125.64701 * 89.99792 * 17 14 12 24 24 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47392 * 300.00304 * 1 2 3 26 26 H 1.09000 * 109.46844 * 60.00380 * 1 2 3 27 27 H 0.96997 * 120.00499 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47080 * 269.99500 * 13 12 2 29 29 H 1.08999 * 109.47598 * 29.99847 * 13 12 2 30 30 H 1.09000 * 109.47224 * 149.99758 * 13 12 2 31 31 H 1.08999 * 110.36633 * 85.34098 * 18 17 14 32 32 H 1.08996 * 110.37033 * 323.00478 * 18 17 14 33 33 H 1.09001 * 111.00522 * 204.91555 * 19 18 17 34 34 H 1.09000 * 110.99891 * 81.06585 * 19 18 17 35 35 H 1.09000 * 109.88350 * 59.48033 * 23 17 14 36 36 H 1.08997 * 110.01690 * 298.38549 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9951 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2861 15 8 2.6904 1.4973 -2.1192 16 8 2.8229 -0.5646 -3.5258 17 7 4.5438 -0.1042 -1.8179 18 6 5.2969 0.7714 -0.9016 19 6 6.7849 0.5398 -1.2653 20 6 6.7953 -0.9790 -1.5822 21 9 7.8316 -1.2926 -2.4683 22 9 6.9037 -1.7292 -0.4064 23 6 5.4211 -1.2027 -2.2479 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9033 -0.5278 4.4376 28 1 2.4157 -2.7377 -0.9716 29 1 0.6904 -2.3002 -0.9847 30 1 1.6239 -2.2852 -2.5001 31 1 5.1109 0.4865 0.1339 32 1 5.0246 1.8142 -1.0639 33 1 7.4338 0.7670 -0.4195 34 1 7.0683 1.1236 -2.1411 35 1 5.5280 -1.1889 -3.3326 36 1 5.0059 -2.1586 -1.9287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337784645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:50 Heat of formation + Delta-G solvation = -157.530160 kcal Electronic energy + Delta-G solvation = -24149.756407 eV Core-core repulsion = 20239.266232 eV Total energy + Delta-G solvation = -3910.490175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = -0.11 seconds Orbital eigenvalues (eV) -48.92095 -47.07898 -37.81210 -36.99273 -36.48498 -35.53250 -32.58593 -30.52443 -30.08222 -28.80532 -25.87512 -25.06769 -22.94883 -21.66550 -20.92010 -18.88337 -17.86708 -17.65763 -17.23884 -16.57990 -16.43390 -15.86511 -15.65366 -14.88964 -14.65331 -14.22406 -13.95104 -13.59165 -13.49158 -13.38449 -13.19181 -12.95982 -12.75641 -12.37640 -12.21125 -12.11502 -12.00627 -11.88551 -11.68126 -11.54444 -11.51334 -11.30862 -11.13475 -10.79918 -10.55097 -10.20348 -9.66941 -9.50016 -9.02364 -8.71919 -8.20395 -6.21418 -4.23405 0.86836 3.08708 3.18342 3.31483 3.32439 3.54722 3.68542 3.80022 4.14294 4.27751 4.38458 4.68183 5.00526 5.06967 5.09273 5.32288 5.46242 5.47312 5.58466 5.65430 5.90482 6.03281 6.06348 6.09591 6.18335 6.25601 6.34156 6.47926 6.49825 6.78655 7.22267 7.26870 7.55573 8.37094 8.82286 9.38789 10.90762 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.006772 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.580445 B = 4133.685833 C = 4875.993181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.528 4.528 5 H 0.083 0.917 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.981 5.981 13 C 0.097 3.903 14 S 2.799 3.201 15 O -0.972 6.972 16 O -0.985 6.985 17 N -1.015 6.015 18 C 0.115 3.885 19 C -0.162 4.162 20 C 0.277 3.723 21 F -0.191 7.191 22 F -0.181 7.181 23 C 0.093 3.907 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.266 0.734 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 0.894 -9.771 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.074 0.926 4 C -0.567 4.567 5 H 0.101 0.899 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.705 3.295 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.823 5.823 13 C -0.049 4.049 14 S 2.809 3.191 15 O -0.956 6.956 16 O -0.969 6.969 17 N -0.853 5.853 18 C -0.010 4.010 19 C -0.202 4.202 20 C 0.239 3.761 21 F -0.172 7.172 22 F -0.162 7.162 23 C -0.035 4.035 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.266 1.367 -10.352 12.177 hybrid contribution -0.354 0.266 0.818 0.930 sum 5.912 1.633 -9.534 11.336 Atomic orbital electron populations 1.22431 0.98744 1.01406 0.99299 1.19120 0.91059 0.93291 0.83208 0.92582 1.21199 1.32874 1.14451 0.88218 0.89922 1.24897 0.95523 0.96523 0.95753 1.69872 1.44938 1.40015 0.97997 0.87040 0.80896 0.83952 0.77581 1.20291 1.22101 1.18627 1.57502 1.63859 1.21881 1.39051 1.21339 1.02290 0.81225 1.00031 1.01427 0.71319 0.73373 0.72992 1.93586 1.83186 1.31938 1.86882 1.93550 1.85496 1.76337 1.41560 1.59169 1.29414 1.35478 1.61239 1.22103 0.88231 0.95645 0.95042 1.23784 0.99085 0.92110 1.05195 1.21785 0.85881 0.91803 0.76603 1.93013 1.61049 1.94428 1.68752 1.93081 1.96561 1.78455 1.48105 1.22389 0.88340 0.92229 1.00548 0.92159 0.93165 0.94628 0.92402 0.93268 0.90352 0.91737 0.88999 0.88609 0.87439 0.87703 0.88380 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.65 37.16 0.32 -3.00 16 2 C 0.24 5.30 2.21 -69.08 -0.15 5.15 16 3 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 4 C -0.53 -13.49 8.95 -34.44 -0.31 -13.80 16 5 H 0.08 2.28 7.89 -52.49 -0.41 1.87 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 8 Si 0.88 20.64 24.37 -169.99 -4.14 16.49 16 9 H -0.28 -6.34 6.87 56.52 0.39 -5.95 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 12 N -0.98 -18.92 3.12 -115.85 -0.36 -19.28 16 13 C 0.10 1.62 9.90 59.84 0.59 2.22 16 14 S 2.80 50.72 6.35 -107.50 -0.68 50.04 16 15 O -0.97 -19.85 16.02 -57.17 -0.92 -20.77 16 16 O -0.99 -18.44 16.32 -57.17 -0.93 -19.37 16 17 N -1.01 -15.64 3.75 -111.42 -0.42 -16.06 16 18 C 0.11 1.59 7.11 -2.52 -0.02 1.57 16 19 C -0.16 -1.77 6.69 -24.58 -0.16 -1.93 16 20 C 0.28 3.53 2.56 -24.90 -0.06 3.47 16 21 F -0.19 -2.40 17.18 2.25 0.04 -2.36 16 22 F -0.18 -2.71 17.19 2.25 0.04 -2.67 16 23 C 0.09 1.23 6.63 -3.07 -0.02 1.21 16 24 H 0.06 1.17 6.66 -51.93 -0.35 0.83 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 30 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.10 1.25 7.78 -51.93 -0.40 0.85 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -30.95 307.18 -6.36 -37.31 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.48 Total: -0.06 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 0.09 Total: -3.16 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.01 Total: -60.09 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.85 Total: -40.14 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.08 Total: -5.03 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.14 Total: 16.49 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.68 Total: 50.04 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.95 -6.36 -37.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337784645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.219 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.10 seconds