Wall clock time and date at job start Tue Mar 31 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46997 * 2 1 4 4 C 1.50707 * 109.46693 * 119.99949 * 2 1 3 5 5 H 1.07992 * 119.99628 * 120.00503 * 4 2 1 6 6 C 1.37878 * 119.99838 * 299.99643 * 4 2 1 7 7 N 1.31511 * 119.99780 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00212 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47133 * 89.99765 * 8 6 4 10 10 H 1.48500 * 109.46756 * 209.99604 * 8 6 4 11 11 H 1.48503 * 109.47123 * 329.99490 * 8 6 4 12 12 N 1.46496 * 109.47376 * 239.99716 * 2 1 3 13 13 C 1.46496 * 120.00095 * 300.00548 * 12 2 1 14 14 S 1.65597 * 119.99924 * 119.99827 * 12 2 1 15 15 O 1.42109 * 106.40370 * 336.46298 * 14 12 2 16 16 O 1.42100 * 106.40599 * 203.54304 * 14 12 2 17 17 N 1.65604 * 107.21817 * 90.00300 * 14 12 2 18 18 C 1.47425 * 125.64416 * 269.94865 * 17 14 12 19 19 C 1.54918 * 104.82827 * 204.16824 * 18 17 14 20 20 C 1.55157 * 101.58155 * 322.99497 * 19 18 17 21 21 F 1.39906 * 110.71759 * 153.86224 * 20 19 18 22 22 F 1.39894 * 110.71872 * 277.13513 * 20 19 18 23 23 C 1.47015 * 125.64701 * 89.99792 * 17 14 12 24 24 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47392 * 300.00304 * 1 2 3 26 26 H 1.09000 * 109.46844 * 60.00380 * 1 2 3 27 27 H 0.96997 * 120.00499 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47080 * 269.99500 * 13 12 2 29 29 H 1.08999 * 109.47598 * 29.99847 * 13 12 2 30 30 H 1.09000 * 109.47224 * 149.99758 * 13 12 2 31 31 H 1.08999 * 110.36633 * 85.34098 * 18 17 14 32 32 H 1.08996 * 110.37033 * 323.00478 * 18 17 14 33 33 H 1.09001 * 111.00522 * 204.91555 * 19 18 17 34 34 H 1.09000 * 110.99891 * 81.06585 * 19 18 17 35 35 H 1.09000 * 109.88350 * 59.48033 * 23 17 14 36 36 H 1.08997 * 110.01690 * 298.38549 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1379 -0.8590 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9759 1.9951 3.9068 11 1 0.8472 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2861 15 8 2.6904 1.4973 -2.1192 16 8 2.8229 -0.5646 -3.5258 17 7 4.5438 -0.1042 -1.8179 18 6 5.2969 0.7714 -0.9016 19 6 6.7849 0.5398 -1.2653 20 6 6.7953 -0.9790 -1.5822 21 9 7.8316 -1.2926 -2.4683 22 9 6.9037 -1.7292 -0.4064 23 6 5.4211 -1.2027 -2.2479 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.9033 -0.5278 4.4376 28 1 2.4157 -2.7377 -0.9716 29 1 0.6904 -2.3002 -0.9847 30 1 1.6239 -2.2852 -2.5001 31 1 5.1109 0.4865 0.1339 32 1 5.0246 1.8142 -1.0639 33 1 7.4338 0.7670 -0.4195 34 1 7.0683 1.1236 -2.1411 35 1 5.5280 -1.1889 -3.3326 36 1 5.0059 -2.1586 -1.9287 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337784645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:50 Heat of formation + Delta-G solvation = -180.197923 kcal Electronic energy + Delta-G solvation = -24150.739355 eV Core-core repulsion = 20239.266232 eV Total energy + Delta-G solvation = -3911.473123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.97253 -48.14165 -38.92530 -38.50512 -38.11198 -37.03770 -34.53022 -31.82749 -31.56949 -29.89369 -27.39210 -26.93707 -24.08675 -22.69594 -22.63194 -20.20214 -19.22701 -18.85579 -18.79701 -18.35317 -17.62628 -17.24968 -16.92292 -16.49076 -15.86828 -15.47581 -15.23264 -15.10523 -14.82566 -14.63302 -14.45141 -14.29857 -14.17953 -13.94889 -13.85377 -13.59957 -13.37181 -13.11877 -13.03542 -13.02545 -12.90426 -12.79511 -12.56965 -12.19985 -12.02703 -11.81681 -11.47085 -11.34796 -10.75395 -10.25777 -9.80071 -8.28375 -6.32801 -0.54648 1.31837 1.40126 1.47498 1.72705 2.31806 2.38434 2.50196 2.69977 3.03084 3.06073 3.33401 3.41413 3.96975 4.01468 4.08350 4.29304 4.42793 4.48808 4.58584 4.63155 4.64288 4.68396 4.74343 4.80604 4.88983 4.98232 5.03438 5.10109 5.18195 5.48669 5.55186 5.82506 6.33994 6.72973 7.32517 8.87012 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.006772 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.580445 B = 4133.685833 C = 4875.993181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.048 0.952 4 C -0.516 4.516 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.937 5.937 8 Si 0.926 3.074 9 H -0.263 1.263 10 H -0.297 1.297 11 H -0.250 1.250 12 N -0.990 5.990 13 C 0.093 3.907 14 S 2.814 3.186 15 O -0.994 6.994 16 O -0.990 6.990 17 N -1.017 6.017 18 C 0.106 3.894 19 C -0.149 4.149 20 C 0.275 3.725 21 F -0.187 7.187 22 F -0.197 7.197 23 C 0.084 3.916 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.266 0.734 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 1.723 -11.209 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.066 0.934 4 C -0.555 4.555 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.577 5.577 8 Si 0.753 3.247 9 H -0.189 1.189 10 H -0.225 1.225 11 H -0.174 1.174 12 N -0.830 5.830 13 C -0.052 4.052 14 S 2.824 3.176 15 O -0.979 6.979 16 O -0.974 6.974 17 N -0.857 5.857 18 C -0.018 4.018 19 C -0.188 4.188 20 C 0.238 3.762 21 F -0.168 7.168 22 F -0.179 7.179 23 C -0.043 4.043 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.260 2.184 -11.819 13.552 hybrid contribution -0.258 -0.081 1.201 1.231 sum 6.002 2.103 -10.618 12.377 Atomic orbital electron populations 1.22395 0.97224 1.02376 1.00038 1.18894 0.92257 0.92565 0.82879 0.93432 1.21339 1.31420 1.13134 0.89630 0.93026 1.25586 0.96955 0.99203 0.95543 1.70000 1.47088 1.42036 0.98550 0.86209 0.79923 0.80937 0.77597 1.18924 1.22485 1.17425 1.57512 1.64742 1.22777 1.38018 1.21487 1.02340 0.79980 1.01422 1.00848 0.71481 0.72624 0.72628 1.93550 1.83876 1.33318 1.87156 1.93538 1.85882 1.76300 1.41707 1.58939 1.28921 1.36423 1.61392 1.22224 0.90200 0.95754 0.93662 1.23820 0.97012 0.90818 1.07118 1.21871 0.85601 0.92704 0.76048 1.93021 1.60770 1.94499 1.68536 1.93053 1.96618 1.79067 1.49117 1.22595 0.88383 0.91504 1.01787 0.91225 0.93868 0.92353 0.92466 0.93449 0.90123 0.89626 0.91264 0.87798 0.85618 0.85015 0.86443 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.38 8.65 71.98 0.62 -5.76 16 2 C 0.24 10.46 2.21 44.25 0.10 10.56 16 3 H 0.05 2.18 5.97 -2.39 -0.01 2.16 16 4 C -0.52 -26.54 8.95 25.60 0.23 -26.31 16 5 H 0.05 2.92 7.89 -2.91 -0.02 2.90 16 6 C 0.03 1.42 5.45 84.66 0.46 1.88 16 7 N -0.94 -54.75 13.96 21.45 0.30 -54.45 16 8 Si 0.93 42.02 24.37 68.60 1.67 43.69 16 9 H -0.26 -11.34 6.87 99.48 0.68 -10.66 16 10 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.25 -10.80 6.53 99.48 0.65 -10.15 16 12 N -0.99 -37.12 3.12 -520.45 -1.62 -38.74 16 13 C 0.09 3.00 9.90 127.77 1.26 4.27 16 14 S 2.81 98.10 6.35 -56.49 -0.36 97.74 16 15 O -0.99 -39.30 16.02 -128.00 -2.05 -41.35 16 16 O -0.99 -35.10 16.32 -128.00 -2.09 -37.19 16 17 N -1.02 -30.10 3.75 -506.43 -1.90 -32.00 16 18 C 0.11 2.84 7.11 86.86 0.62 3.45 16 19 C -0.15 -2.89 6.69 31.99 0.21 -2.68 16 20 C 0.28 6.56 2.56 31.78 0.08 6.64 16 21 F -0.19 -4.28 17.18 44.97 0.77 -3.50 16 22 F -0.20 -5.79 17.19 44.97 0.77 -5.01 16 23 C 0.08 2.11 6.63 86.73 0.57 2.68 16 24 H 0.07 2.58 6.66 -2.39 -0.02 2.56 16 25 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 2.54 6.43 -2.39 -0.02 2.53 16 30 H 0.09 2.39 7.02 -2.39 -0.02 2.37 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.10 2.59 7.78 -2.39 -0.02 2.57 16 33 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.12 2.49 8.10 -2.39 -0.02 2.47 16 36 H 0.09 2.28 8.11 -2.39 -0.02 2.26 16 Total: -1.00 -65.39 307.18 0.68 -64.71 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.02 Total: 11.39 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 4.16 Total: -5.27 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -3.23 Total: -125.20 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -4.14 Total: -78.55 kcal Atomic # 9 Polarization: -10.06 SS G_CDS: 1.55 Total: -8.52 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.69 kcal Atomic # 16 Polarization: 98.10 SS G_CDS: -0.36 Total: 97.74 kcal Total: -65.39 0.68 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337784645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.488 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds