Wall clock time and date at job start Tue Mar 31 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47357 * 239.99964 * 3 2 1 5 5 H 1.48498 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47336 * 120.00237 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 163.06160 * 7 2 1 9 9 C 1.41111 * 119.99546 * 343.06447 * 7 2 1 10 10 C 1.40885 * 120.10536 * 334.52369 * 9 7 2 11 11 C 1.36315 * 119.89334 * 180.30167 * 10 9 7 12 12 C 1.40016 * 120.10695 * 359.47978 * 11 10 9 13 13 C 1.47634 * 119.89772 * 180.25948 * 12 11 10 14 14 O 1.21592 * 120.00292 * 180.25009 * 13 12 11 15 15 N 1.34776 * 119.99869 * 0.24248 * 13 12 11 16 16 C 1.46502 * 119.99692 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46802 * 180.02562 * 16 15 13 18 18 S 1.81405 * 109.46847 * 180.02562 * 17 16 15 19 19 N 1.65602 * 104.44749 * 179.97438 * 18 17 16 20 20 O 1.42101 * 110.54046 * 291.62319 * 18 17 16 21 21 O 1.42097 * 110.54433 * 68.37471 * 18 17 16 22 22 C 1.40013 * 120.20367 * 0.50191 * 12 11 10 23 23 C 1.36313 * 120.11052 * 359.77407 * 22 12 11 24 24 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.05566 * 0.03454 * 10 9 7 26 26 H 1.08000 * 119.94417 * 179.70468 * 11 10 9 27 27 H 0.97001 * 120.00198 * 0.02562 * 15 13 12 28 28 H 1.09000 * 109.47191 * 299.99973 * 16 15 13 29 29 H 1.09002 * 109.47516 * 60.00456 * 16 15 13 30 30 H 1.09000 * 109.47033 * 299.99834 * 17 16 15 31 31 H 1.08994 * 109.47452 * 60.00133 * 17 16 15 32 32 H 0.97002 * 119.99958 * 0.02562 * 19 18 17 33 33 H 0.96996 * 120.00072 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.94505 * 179.75439 * 22 12 11 35 35 H 1.08007 * 120.05439 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2730 9 6 1.3478 -2.4101 0.3549 10 6 0.2175 -2.3706 1.1950 11 6 -0.4128 -3.5288 1.5406 12 6 0.0548 -4.7554 1.0534 13 6 -0.6348 -6.0064 1.4260 14 8 -0.2276 -7.0730 1.0077 15 7 -1.7157 -5.9662 2.2301 16 6 -2.3997 -7.2078 2.6003 17 6 -3.5852 -6.8845 3.5120 18 16 -4.4317 -8.4219 3.9710 19 7 -5.6775 -7.9323 4.9461 20 8 -5.0749 -8.9937 2.8403 21 8 -3.6097 -9.2088 4.8220 22 6 1.1775 -4.7995 0.2179 23 6 1.8178 -3.6471 -0.1286 24 1 -0.4850 0.8401 0.0004 25 1 -0.1464 -1.4247 1.5680 26 1 -1.2765 -3.5000 2.1884 27 1 -2.0408 -5.1154 2.5636 28 1 -2.7593 -7.7068 1.7004 29 1 -1.7048 -7.8627 3.1259 30 1 -3.2260 -6.3853 4.4119 31 1 -4.2801 -6.2298 2.9861 32 1 -5.8005 -6.9897 5.1393 33 1 -6.2845 -8.5880 5.3235 34 1 1.5370 -5.7482 -0.1523 35 1 2.6840 -3.6822 -0.7728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340461175.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:31 Heat of formation + Delta-G solvation = -99.454306 kcal Electronic energy + Delta-G solvation = -20765.985534 eV Core-core repulsion = 17276.410152 eV Total energy + Delta-G solvation = -3489.575382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.23436 -37.28084 -37.25177 -36.20842 -35.14500 -33.93372 -33.55480 -31.38973 -29.82789 -29.49927 -26.11381 -23.82362 -21.87271 -20.96997 -19.99902 -19.63926 -17.90131 -17.75831 -17.57915 -16.81632 -16.48660 -15.97526 -15.47626 -15.23001 -15.05330 -14.13716 -13.95772 -13.72124 -13.29448 -12.84585 -12.59043 -12.43852 -12.36888 -12.23384 -12.14371 -12.06689 -11.94218 -11.43533 -11.34757 -11.26439 -11.04233 -10.80857 -10.70196 -10.12435 -9.62134 -9.42372 -9.09380 -8.82019 -7.79464 -7.60920 -7.09254 -4.67078 -0.14059 2.14825 2.51650 2.88271 2.90290 2.94044 2.97012 3.23812 3.68835 3.72725 3.77596 3.95666 4.09699 4.48723 4.62055 4.96278 5.41358 5.43400 5.51781 5.60307 5.93235 5.97923 6.25628 6.64139 6.68832 6.72089 6.76684 6.96229 7.06117 7.36679 7.56555 7.69865 7.79146 8.00348 8.08745 8.33030 8.56553 8.68254 8.93333 9.82743 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.030773 B = 0.002720 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.663410 B =10290.580487 C =10953.399875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.177 4.177 11 C -0.063 4.063 12 C -0.286 4.286 13 C 0.571 3.429 14 O -0.570 6.570 15 N -0.738 5.738 16 C 0.136 3.864 17 C -0.641 4.641 18 S 2.626 3.374 19 N -1.252 6.252 20 O -0.958 6.958 21 O -0.958 6.958 22 C -0.020 4.020 23 C -0.238 4.238 24 H 0.287 0.713 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.401 0.599 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.413 0.587 33 H 0.420 0.580 34 H 0.102 0.898 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 -4.044 9.343 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.196 4.196 11 C -0.083 4.083 12 C -0.290 4.290 13 C 0.366 3.634 14 O -0.452 6.452 15 N -0.393 5.393 16 C 0.010 3.990 17 C -0.770 4.770 18 S 2.716 3.284 19 N -0.926 5.926 20 O -0.947 6.947 21 O -0.947 6.947 22 C -0.039 4.039 23 C -0.258 4.258 24 H 0.099 0.901 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.237 0.763 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.239 0.761 33 H 0.250 0.750 34 H 0.120 0.880 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.087 -5.630 8.658 14.436 hybrid contribution -0.297 2.176 0.472 2.246 sum -10.383 -3.454 9.130 14.252 Atomic orbital electron populations 1.69728 1.07913 1.30194 1.31717 1.26106 0.94844 1.01917 0.91866 0.86239 0.80186 0.79336 0.80390 1.18614 1.20037 1.18461 1.19841 0.98140 0.91076 1.37849 0.89670 1.17793 0.90384 0.92195 0.87030 1.20971 0.99880 0.96823 1.01964 1.20454 0.97382 0.92610 0.97805 1.18835 1.04580 0.90835 1.14771 1.18657 0.78458 0.89849 0.76399 1.90659 1.66523 1.32076 1.55934 1.45813 1.31870 1.08224 1.53383 1.20729 0.91152 0.89643 0.97444 1.30727 1.11549 1.23594 1.11087 1.04437 0.74312 0.75364 0.74335 1.53135 1.50353 1.18216 1.70857 1.93634 1.73592 1.74500 1.52960 1.93631 1.69339 1.65626 1.66115 1.20370 0.92782 0.97205 0.93592 1.20737 1.04579 0.92689 1.07749 0.90144 0.86172 0.89386 0.76344 0.90238 0.90237 0.83897 0.83864 0.76135 0.75010 0.87987 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.98 10.95 55.56 0.61 -17.37 16 2 C 0.07 1.68 5.15 -17.31 -0.09 1.59 16 3 Si 0.92 16.82 29.59 -169.99 -5.03 11.79 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.44 -10.72 9.05 -37.75 -0.34 -11.06 16 8 H 0.09 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.13 3.21 5.57 -106.80 -0.59 2.62 16 10 C -0.18 -4.19 8.63 -39.27 -0.34 -4.53 16 11 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 12 C -0.29 -6.35 5.89 -104.73 -0.62 -6.96 16 13 C 0.57 11.83 7.76 -12.43 -0.10 11.74 16 14 O -0.57 -13.40 16.32 5.29 0.09 -13.32 16 15 N -0.74 -11.47 5.50 -61.31 -0.34 -11.81 16 16 C 0.14 1.75 5.68 -4.04 -0.02 1.73 16 17 C -0.64 -4.70 6.21 37.16 0.23 -4.47 16 18 S 2.63 22.32 5.97 -107.50 -0.64 21.68 16 19 N -1.25 -5.76 9.43 60.35 0.57 -5.19 16 20 O -0.96 -12.03 18.10 -57.54 -1.04 -13.07 16 21 O -0.96 -11.96 18.10 -57.54 -1.04 -13.00 16 22 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 23 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 24 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 25 H 0.12 2.87 6.18 -52.48 -0.32 2.54 16 26 H 0.09 1.53 6.37 -52.49 -0.33 1.19 16 27 H 0.40 5.22 6.47 -40.82 -0.26 4.95 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.14 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 0.68 8.83 -34.47 -0.30 0.37 16 33 H 0.42 1.60 8.96 -34.47 -0.31 1.29 16 34 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 35 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -34.99 319.23 -8.62 -43.62 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -3.60 Total: 9.80 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -3.00 Total: -17.94 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.84 Total: -34.36 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -2.00 Total: -39.39 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Atomic # 16 Polarization: 22.32 SS G_CDS: -0.64 Total: 21.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.99 -8.62 -43.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340461175.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.838 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds